| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2464301 = | 87 (0.930) | 5 (0.060) | 6/232 | NT | 6.5% | intergenic (+13/+27) | lolE/PP_2157 | lipoprotein releasing system permease/sensor histidine kinase |
| ? | NC_002947 | 2464329 = | 63 (0.730) | coding (1352/1353 nt) | PP_2157 | sensor histidine kinase | |||||
GCAGCGAGCATGCGGGGCTGGGCCTGGCGATTACCCGGTCGATCGTGCAGGCCCATGGCGGATGCATACGGGCGGAGTGCGAGGGTGGGTGGACCCGATTCGTGATCGAGTTCACTCAAGACCGGTAATCCTGGGGCGCTTTACGC‑CCCCAGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2464455‑2464301‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccccaggatTACCGGTCTTGAGTGAACTCGATCACGAATCGGGTCCACCCACCCTCGCACTCCGCCCGTATGCATCCGCCATGGGCCTGCACGATCGACCGGGTAATCGCCAGGCCCAGCCCCGCATGCTCGCTGCTGCCTTCCCGTCGAGCCGGG > NC_002947/2464329‑2464475 GCAGCGAGCATGCGGGGCTGGGCCTGGCGATTACCCGGTCGATCGTGCAGGCCCATGGCGGATGCATACGGGCGGAGTGCGAGGGTGGGTGGACCCGATTCGTGATCGAGTTCACTCAAGACCGGTAATCCTGGGGCGCTTTACGC‑CCCC < 1:1865294/150‑1 ATGCGGGGCTGGGCCTGGCGATTACCCGGTCGATCGTGCAGGCCCATGGCGGATGCATACGGGCGGAGTGCGAGGGTGGGTGGACCCGATTCGTGATCGAGTTCACTCAAGACCGGTAATCCTGGGG‑GCGTAAAGCGCCCCAGGATTACC < 1:1917479/150‑1 GCCTGGCGATTACCCGGTCGATCGTGCAGGCCCATGGCGGATGCATACGGGCGGAGTGCGAGGGTGGGTGGACCCGATTCGTGATCGAGTTCACTCAAGACCGGTAATCCTGGGGCGCTTTACGC‑CCCCAGGAT < 2:340912/134‑1 GCCTGGCGATTACCCGGTCGATCGTGCAGGCCCATGGCGGATGCATACGGGCGGAGTGCGAGGGTGGGTGGACCCGATTCGTGATCGAGTTCACTCAAGACCGGTAATCCTGGGGCGCTTTACGC‑CCCCAGGAT > 1:340912/1‑134 GTAATCCTGGGGCGCTTTACGC‑CCCCAGGATTACCGGTCTTGAGTGAACTCGATCACGAATCGGGTCCACCCACCCTCGCACTCCGCCCGTATGCATCCGCCATGG < 1:1477313/106‑1 GTAATCCTGGGGCGCTTTACGC‑CCCCAGGATTACCGGTCTTGAGTGAACTCGATCACGAATCGGGTCCACCCACCCTCGCACTCCGCCCGTATGCATCCGCCATGG > 2:1477313/1‑106 TGGGGCGCTTTACGC‑CCCCAGGATTACCGGTCTTGAGTGAACTCGATCACGAATCGG > 1:1513666/1‑57 TGGGGCGCTTTACGC‑CCCCAGGATTACCGGTCTTGAGTGAACTCGATCACGAATCGG < 2:1513666/57‑1 GGCGCTTTACGC‑CCCCAGGATTACCGGTCTTGAGTGAACTCGATCACGAATCGGGTCCACCCACCCTCGCACTCCGCCCGTATGCATCCGCCATGGGCCTGCACGATCGACCGGGTAATCGCCAGGCCCAGCCCCGCATGCTCGCTGCTG > 1:991551/1‑150 TACGC‑CCCCAGGATTACCGGTCTTGAGTGAACTCGATCACGAATCGGGTCCACCCACCCTCGCACTCCGCCCGTATGCATCCGCCATGGGCCTGCACGATCGACCGGGTAATCGCCAGGCCCAGCCCCGCATGCTCGCTGCTGCCTTCCC < 2:1917479/150‑1 CCCCAGGATTACCGGTCTTGAGTGAACTCGATCACGAATCGGGTCCACCCACCCTCGCACTCCGCCCGTATGCATCCGCCATGGGCCTGCACGATCGACCGGGTAATCGCCAGGCCCAGCCCCGCATGCTCGCTGCTGCCTTCCCGTCGA < 2:991551/150‑1 CCCCAGGATTACCGGTCTTGAGTGAACTCGATCACGAATCGGGTCCACCCACCCTCGCACTCCGCCCGTATGCATCCGCCATGGGCCTGCACGATCGACCGGGTAATCGCCAGGCCCAGCCCCGCATGCTCGCTGCTGCCTTCCCGTCGA < 2:303316/150‑1 CCCAGGATTACCGGTCTTGAGTGAACTCGATCACGAATCGGGTCCACCCACCCTCGCACTCCGCCCGTATGCATCCGCCATGGGCCTGCACGATCGACCGGGTAATCGCCAGGCCCAGCCCCGCATGCTCGCTGCTGCCTTCCCGTCGAG > 2:2417770/1‑150 CCAGGATTACCGGTCTTGAGTGAACTCGATCACGAATCGGGTCCACCCACCCTCGCACTCCGCCCGTATGCATCCGCCATGGGCCTGCACGATCGACCGGGTAATCGCCAGGCCCAGCCCCGCATGCTCGCTGCTGCCTTCCCGTCGAGC > 1:721373/1‑150 CCAGGATTACCGGTCTTGAGTGAACTCGATCACGAATCGGGTCCACCCACCCTCGCACTCCGCCCGTATGCATCCGCCATGGGCCTGCACGATCGACCGGGTAATCGCCAGGCCCAGCCCCGCATGCTCGCTGCTGCCTTCCCGTCGAGC > 2:2359792/1‑150 CCAGGATTACCGGTCTTGAGTGAACTCGATCACGAATCGGGTCCACCCACCCTCGCACTCCGCCCGTATGCATCCGCCATGGGCCTGCACGATCGACCGGGTAATCGCCAGGCCCAGCCCCGCATGCTCGCTGCTGCCTTCCCGTCGAGC > 2:588785/1‑150 CAGGATTACCGGTCTTGAGTGAACTCGATCACGAATCGGGTCCACCCACCCTCGCACTCCGCCCGTATGCATCCGCCATGGGCCTGCACGATCGACCGGGTAATCGCCAGGCCCAGCCCCGCATGCTCGCTGCTGCCTTCCCGTCGAGCC > 1:1826745/1‑150 GGATTACCGGTCTTGAGTGAACTCGATCACGAATCGGGTCCACCCACCCTCGCACTCCGCCCGTATGCATCCGCCATGGGCCTGCACGATCGACCGGGTAATCGCCAGGCCCAGCCCCGCATGCTCGCTGCTGCCTTCCCGTCGAGCCGG < 1:2359792/150‑1 GATTACCGGTCTTGAGTGAACTCGATCACGAATCGGGTCCACCCACCCTCGCACTCCGCCCGTATGCATCCGCCATGGGCCTGCACGATCGACCGGGTAATCGCCAGGCCCAGCCCCGCATGCTCGCTGCTGCCTTCCCGTCGAGCCGGG > 2:1355484/1‑150 GATTACCGGTCTTGAGTGAACTCGATCACGAATCGGGTCCACCCACCCTCGCACTCCGCCCGTATGCATCCGCCATGGGCCTGCACGATCGACCGGGTAATCGCCAGGCCCAGCCCCGCATGCTCGCTGCTGCCTTCCCGTCGAGCCGGG > 1:1903261/1‑150 GCAGCGAGCATGCGGGGCTGGGCCTGGCGATTACCCGGTCGATCGTGCAGGCCCATGGCGGATGCATACGGGCGGAGTGCGAGGGTGGGTGGACCCGATTCGTGATCGAGTTCACTCAAGACCGGTAATCCTGGGGCGCTTTACGC‑CCCCAGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2464455‑2464301‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccccaggatTACCGGTCTTGAGTGAACTCGATCACGAATCGGGTCCACCCACCCTCGCACTCCGCCCGTATGCATCCGCCATGGGCCTGCACGATCGACCGGGTAATCGCCAGGCCCAGCCCCGCATGCTCGCTGCTGCCTTCCCGTCGAGCCGGG > NC_002947/2464329‑2464475 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |