New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2522067	80 (0.860)	5 (0.060)	5/236	NT	6.2%	coding (3275/4446 nt)	PP_2212	leucine‑rich repeat‑containing protein
	?	NC_002947	= 2522078	76 (0.860)					coding (3286/4446 nt)	PP_2212	leucine‑rich repeat‑containing protein

ATGCGTCTACCAACAGGCATTGCCCATTTACCGAATCTTCAATCGCTTCGGTTGGCGCATAACGAGATACGCCTCGACGCCCAGGCGATCAGCGTTCTGCATGGTTTGTCCAACCTTGTGCATCTTGATCTCAGTCATAACCGGCTGGAAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2521916‑2522067 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggaagcTCATGTCCA‑GCGCTTCCAGCCGGTTATGACTGAGATCAAGATGCACAAGGTTGGACAAACCATGCAGAACGCTGATCGCCTGGGCGTCGAGGCGTATCTCGTTATGCGCCAACCGAAGCGATTGAAGATTCGGTAAATGGGCAATGCCT  <  NC_002947/2522078‑2521930                                                                                                                                                                                                                                                                                                                ATGCGTCTACCAACAGGCATTGCCCATTTACCGAATCTTCAATCGCTTCGGTTGGCGCATAACGAGATACGCCTCGACGCCCAGGCGATCAGCGTTCTGCATGGTTTGTCCAACCTTGTGCATCTTGATCTCAGTCATAACCGGCTGGAA                                                                                                                                                          >  2:1195433/1‑150               AGGCATTGCCCATTTACCGAATCTTCAATCGCTTCGGTTGGCGCATAACGAGATACGCCTCGACGCCCAGGCGATCAGCGTTCTGCATGGTTTGTCCAACCTTGTGCATCTTGATCTCAGTCATAACCGGCTGGAAGCTCATGTCCA‑GCG                                                                                                                                           >  1:2444540/1‑150                         CATTTACCGAATCTTCAATCGCTTCGGTTGGCGCATAACGAGATACGCCTCGACGCCCAGGCGATCAGCGTTCTGCATGGTTTGTCCAACCTTGTGCATCTTGATCTCAGTCATAACCGGCTGGAAGCTCATGTCCA‑GCGCTTCCAGCCG                                                                                                                                 <  1:309124/150‑1                                                                                  CAGGCGATCAGCGTTCTGCATGGTTTGTCCAACCTTGTGCATCTTGATCTCAGTCATAACCGGCTGGAAGCTCATGTCCA‑GCGCTTCCAGCCGGTTAT                                                                                                                            >  1:1496883/1‑98                                                                                  CAGGCGATCAGCGTTCTGCATGGTTTGTCCAACCTTGTGCATCTTGATCTCAGTCATAACCGGCTGGAAGCTCATGTCCA‑GCGCTTCCAGCCGGTTAT                                                                                                                            <  2:1496883/98‑1                                                                                                                            CTTGATCTCAGTCATAACCGGCTGGAAGCGC‑TGGACATGAGCTTCCAGCCGGTTATGACTGAGATCAAGATGCACAAGGTTGGACAAACCATGCAGAACGCTGATCGCCTGGGCGTCGAGGCGTATCTCGTTATGCGCCAACCGAAGCGA                              >  2:2444540/1‑150                                                                                                                                                 ggtGAAGCACATGTCCA‑GCGCTCTCACCCGGTTATGACTGAGATCAAGATGCACAAGGTTGGACAAACCATGCAGAACGCTGATCGCCGGGGCGTCGAGGCGTATCTCGTTATGCGCCAACCGAAGCGATTGAAGATTCGGTAAATGGGC         <  1:1952190/147‑1                                                                                                                                                  TGGAAGCTCATGTCCA‑GCGCTTCCAGCCGGTTATGACTGAGATCAAGATGCACAAGGTTGGACAAACCATGCAGAACGCTGATCGCCTGGGCGTCGAGGCGTATCTCGTTATGCGCCAACCGAAGCGATTGAAGA                       >  2:49660/1‑135                                                                                                                                                  TGGAAGCTCATGTCCA‑GCGCTTCCAGCCGGTTATGACTGAGATCAAGATGCACAAGGTTGGACAAACCATGCAGAACGCTGATCGCCTGGGCGTCGAGGCGTATCTCGTTATGCGCCAACCGAAGCGATTGAAGA                       <  1:49660/135‑1                                                                                                                                                   GGAAGCTCATGTCCA‑GCGCTTCCAGCCGGTTATGACTGAGATCAAGATGCACAAGGTTGGACAAACCATGCAGAACGCTGATCGCCTGGGCGTCGAGGCGTATCTCGTTATGCGCCAACCGAAGCGATTGAAGATTCGGTAAATGGGCAA       >  2:637152/1‑150                                                                                                                                                    GAAGCTCATGTCCA‑GCGCTTCCAGCCGGTTATGACTGAGATCAAGATGCACAAGGTTGGACAAACCATGCAGAACGCTGATCGCCTGGGCGTCGAGGCGTATCTCGTTATGCGCCAACCGAAGCGATTGAAGATT                     >  1:1345175/1‑135                                                                                                                                                    GAAGCTCATGTCCA‑GCGCTTCCAGCCGGTTATGACTGAGATCAAGATGCACAAGGTTGGACAAACCATGCAGAACGCTGATCGCCTGGGCGTCGAGGCGTATCTCGTTATGCGCCAACCGAAGCGATTGAAGATT                     <  2:1345175/135‑1                                                                                                                                                    GAAGCTCATGTCCA‑GCGCTTCCAGCCGGTTATGACTGAGATCAAGATGCACAAGGTTGGACAAACCATGCAGAACGCTAATCGCCTGGGCGTCGAGGCGTATCTCGTTATGCGCCAACCGAAGCGATTGAAGATTCGGTAAATGGGCAAT      >  1:270247/1‑150                                                                                                                                                     AAGCTCATGTCCA‑GCGCTTCCAGCCGGTTATGACTGAGATCAAGATGCACAAGGTTGGACAAACCATGCAGAACGCTGATCGCCTGGGCGTCGAGGCGTATCTCGTTATGCGCCAACCGAAGCGATTGAAGATTCGGTAAATGGGCAATG     >  1:580369/1‑150                                                                                                                                                        CTCATGTCCA‑GCGCTTCCAGCCGGTTATGACTGAGATCAAGATGCACAAGGTTGGACAAACCATGCAGAACGCTGATCGCCTGGGCGTCGAGGCGTATCTCGTTATGCGCCAACCGAAGCGATTGAAGATTCGGTAAATGGGCAATGCCT  >  1:965036/1‑150                                                                                                                                                        CTCATGTCCA‑GCGCTTCCAGCCGGTTATGACTGAGATCAAGATGCACAAGGTTGGACAAACCATGCAGAACGCTGATCGCCTGGGCGTCGAGGCGTATCTCGTTATGCGCCAACCGAAGCGATTGAAGATTCGGTAAATGGGCAATGCCT  <  2:1632433/150‑1                                                                                                                                                        CTCATGTCCA‑GCGCTTCCAGCCGGTTATGACTGAGATCAAGATGCACAAGGTTGGACAAACCATGCAGAACGCTGATCGCCTGGGCGTCGAGGCGTATCTCGTTATGCGCCAACCGAAGCGATTGAAGATTCGGTAAATGGGCAATGCCT  <  1:1279307/150‑1                                                                                                                                                                                                                                                                                                                ATGCGTCTACCAACAGGCATTGCCCATTTACCGAATCTTCAATCGCTTCGGTTGGCGCATAACGAGATACGCCTCGACGCCCAGGCGATCAGCGTTCTGCATGGTTTGTCCAACCTTGTGCATCTTGATCTCAGTCATAACCGGCTGGAAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2521916‑2522067 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggaagcTCATGTCCA‑GCGCTTCCAGCCGGTTATGACTGAGATCAAGATGCACAAGGTTGGACAAACCATGCAGAACGCTGATCGCCTGGGCGTCGAGGCGTATCTCGTTATGCGCCAACCGAAGCGATTGAAGATTCGGTAAATGGGCAATGCCT  <  NC_002947/2522078‑2521930

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.