New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2692342 =	90 (0.960)	5 (0.060)	5/242	NT	5.5%	coding (460/534 nt)	PP_2359	putative Type 1 pili subunit CsuA/B protein
	?	NC_002947	2692371 =	86 (0.950)					coding (489/534 nt)	PP_2359	putative Type 1 pili subunit CsuA/B protein

GGTAGTCACTGCCCCCAAAGGAGCGGCCAACAACACGCTGACGCCAGTCAGGCCTCCTGCCAGCCAGCCGCGCATGGGTCAGAACGACAGCTCGACCGAGATCGTGTCGCTGTACACCCCTGCGGGCAGGCCCGGCTTGCCGACGGCCTTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2692494‑2692342 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccCGCAGGGGTGTACAGCGACACGATCTCGGTCGAGCTGTCGTTCTGACCCATGCGCGGCTGGCTGGCAGGAGGCCTGACTGGCGTCAGCGTGTTGTTGGCCGCTCCTTTGGGGGCAGTGACTACCAGTACCTTCACGGTGACGGCGC  >  NC_002947/2692371‑2692516                                                                                                                                                                                                                                                                                                             GGTAGTCACTGCCCCCAAAGGAGCGGCCAACAACACGCTGACGCCAGTCAGGCCTCCTGCCAGCCAGCCGCGCATGGGTCAGAACGACAGCTCGACCGAGATCGTGTCGCTGTACACCCCTGCGGGCAGGCCCGGCTTGCCGACGGCCTT                                                                                                                                                       <  1:2005816/150‑1   TAGTCACTGCCCCCAAAGGAGCGGCCAACAACACGCTGACGCCAGTCAGGCCTCCTGCCAGCCAGCCGCGCATGGGTCAGAACGACAGCTCGACCGAGATCGTGTCGCTGTACACCCCTGCGGGCAGGCCCGGCTTGCCGACGGCCTTGC                                                                                                                                                     <  1:340954/150‑1    AGTCACTGCCCCCAAAGGAGCGGCCAACAACACGCTGACGCCAGTCAGGCCTCCTGCCAGCCAGCCGCGCATGGGTCAGAACGACAGCTCGACCGAGATCGTGTCGCTGTACACCCCTGCGGGCAGGCCCGGCTTGCCGACGGCCTTGCC                                                                                                                                                    >  1:1259325/1‑150                                                    GCCTCCTGCCAGCCAGCCGCGCATGGGTCAGAACGACAGCTCGACCGAGATCGTGTCGCTGTACACCCCTGTGGGCAGGCCCGGCTTGCCGACGGCCTTGCC                                                                                                                                                    <  1:823003/102‑1                                                    GCCTCCTGCCAGCCAGCCGCGCATGGGTCAGAACGACAGCTCGACCGAGATCGTGTCGCTGTACACCCCTGTGGGCAGGCCCGGCTTGCCGACGGCCTTGCC                                                                                                                                                    >  2:823003/1‑102                                                                                                                    ACCCCTGCGGGCAGGCCCGGCTTGCCGACGGCCTTGCCCGCAGGGGTGTACAGCGACACGATCTCGGTCGAGCTGTCGTTCTGACCCATGCGCGGCTGGCTGGCAGGAGGCCTGACTG                                                                    <  1:481079/118‑1                                                                                                                    ACCCCTGCGGGCAGGCCCGGCTTGCCGACGGCCTTGCCCGCAGGGGTGTACAGCGACACGATCTCGGTCGAGCTGTCGTTCTGACCCATGCGCGGCTGGCTGGCAGGAGGCCTGACTG                                                                    >  2:481079/1‑118                                                                                                                      CCCTGCGGGCAGGCCCGGCTTGCCGACGGCCTTGCCCACAGGGGTGTACAGCGACACGATCTCGGTCGAGCTGTCGTTCTGACCCATGCGCGGCTGGCTGGCAGGAGGC                                                                           >  1:1776286/1‑109                                                                                                                      CCCTGCGGGCAGGCCCGGCTTGCCGACGGCCTTGCCCACAGGGGTGTACAGCGACACGATCTCGGTCGAGCTGTCGTTCTGACCCATGCGCGGCTGGCTGGCAGGAGGC                                                                           <  2:1776286/109‑1                                                                                                                                  GCCCGGCTTGCCGACGGCC‑TGCCCGCAGGGGTGTACAGCGACACGATCTCGGTCGAGCTGTCGTTCTGACCCATGCGCGGCTGGCTGGCAGGAGGCCTGACTGGCGTCAGCGTGTTGTTGGCCGCTCCTTTGGGGGCAGTGACTACCAGT                     >  2:676541/1‑150                                                                                                                                                      TGCCCGCAGGGGTGTACAGCGACACGATCTCGGTCGAGCTGTCGTTCTGACCCATGCGCGGCTGGCTGGCAGGAGGCCTGACTGGCGTCAGCGTGTTGTTGGCCGCTCCTTTGGGGGCAGTGACTACCAGTACCTTCACGGTGACGGCGC  >  2:1134654/1‑150                                                                                                                                                      TGCCCGCAGGGGTGTACAGCGACACGATCTCGGTCGAGCTGTCGTTCTGACCCATGCGCGGCTGGCTGGCAGGAGGCCTGACTGGCGTCAGCGTGTTGTTGGCCGCTCCTTTGGGGGCAGTGACTACCAGTACCTTCACGG           <  1:1122106/141‑1                                                                                                                                                      TGCCCGCAGGGGTGTACAGCGACACGATCTCGGTCGAGCTGTCGTTCTGACCCATGCGCGGCTGGCTGGCAGGAGGCCTGACTGGCGTCAGCGTGTTGTTGGCCGCTCCTTTGGGGGCAGTGACTACCAGTACCTTCACGG           >  2:1122106/1‑141                                                                                                                                                         CCGCAGGGGTGTACAGCGACACGATCTCGGTCGAGCTGTCGTTCTGACCCATGCGCGGCTGGCTGGCAGGAGGCCTGACTGGCGTCAGCGTGTTGTTGGCCGCTCCTTTG                                       <  1:577841/110‑1                                                                                                                                                         CCGCAGGGGTGTACAGCGACACGATCTCGGTCGAGCTGTCGTTCTGACCCATGCGCGGCTGGCTGGCAGGAGGCCTGACTGGCGTCAGCGTGTTGTTGGCCGCTCCTTTG                                       >  2:577841/1‑110                                                                                                                                                                                                                                                                                                             GGTAGTCACTGCCCCCAAAGGAGCGGCCAACAACACGCTGACGCCAGTCAGGCCTCCTGCCAGCCAGCCGCGCATGGGTCAGAACGACAGCTCGACCGAGATCGTGTCGCTGTACACCCCTGCGGGCAGGCCCGGCTTGCCGACGGCCTTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2692494‑2692342 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccCGCAGGGGTGTACAGCGACACGATCTCGGTCGAGCTGTCGTTCTGACCCATGCGCGGCTGGCTGGCAGGAGGCCTGACTGGCGTCAGCGTGTTGTTGGCCGCTCCTTTGGGGGCAGTGACTACCAGTACCTTCACGGTGACGGCGC  >  NC_002947/2692371‑2692516

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.