| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3029319 = | 88 (0.940) | 6 (0.070) | 5/246 | NT | 6.6% | coding (929/1653 nt) | pcaY | aromatic acid chemoreceptor |
| ? | NC_002947 | 3029358 = | 84 (0.910) | coding (968/1653 nt) | pcaY | aromatic acid chemoreceptor | |||||
GTCATGGCTTCGGTGCCGTCGATGTTTTCGCTGACTTGCCGGCGGCTTTGCGCGGCCAGCTGGTTGGATTCACTGGTGGTTTGCGAGGTGGTGATCGCGTTGCGCGCAACTTCCTCCACTGCCGTGGTCATTTCGGTCACGGCAGTGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3029469‑3029319‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggAAGTTGCGCGCAACGCGATCACCACCTCGCAAACCACCAGTGAATCCAACCAGCTGGCCGCGCAAAGCCGCCGGCAAGTCAGCGAAAACATCGACGGCACCGAAGCCATGA > NC_002947/3029358‑3029468 GTCATGGCTTCGGTGCCGTCGATGTTTTCGCTGACTTGCCGGCGGCTTTGCGCGGCCAGCTGGTTGGATTCACTGGTGGTTTGCGAGGTGGTGATCGCGTTGCGCGCAACTTCCTCCACTGCCGTGGTCATTTCGGTCACGGCAGTGGCG < 1:1605520/150‑1GTCATGGCTTCGGTGCCGTCGATGTTTTCGCTGACTTGCCGGCGGCTTTGCGCGGCCAGCTGGTTGGATTCACTGGTGGTTTGCGAGGTGGTGATCGCGTTGCGCGCAACTTCCTCCACTGCCGTGGTCATTTCGGTCACGGCAGTGGCG < 2:2237361/150‑1 GCAACTTCCTCCACTGCCGTGGTCATTTCGGTCACGGCAGTGGCGGAAGTTGCGCGCAACGCGATCACCACCTCGCAAACCACCAGTGAATCCAACCAGCTGGCCGCGCAAAGCCGCCGGCAAGTCAGCGAAAACATCGACGGCACCGAA > 1:2212399/1‑150 CCTCCACTGCCGTGGTCATTTCGGTCACGGCAGTGGCGGAAGTTGCGCGCAACGCGATCACCACCTCGCAAACCACCAGTGAATCCAACCAGCTGGCCGCGCAAAGCCGCCGGCAAGTCAGCGAAAACATCGACGGCACCGAAGCCATGA < 2:2212399/150‑1 TCCACTGCCGTGGTCATTTCGGTCACGGCAGTGGAGGAAGTTGCGCGCAACGCGATCACCACCTCGCAAACCACCAGTGAATCCAACCAGCTGGCCGCGCAAA < 1:993730/103‑1 TCCACTGCCGTGGTCATTTCGGTCACGGCAGTGGAGGAAGTTGCGCGCAACGCGATCACCACCTCGCAAACCACCAGTGAATCCAACCAGCTGGCCGCGCAAA > 2:993730/1‑103 ACTGCCGTGGTCATTTCGGTCACGGCAGTGGCGGAAGTTGCGCGCAACGCGATCACCACCTCGCAAACCACCAGTGAATCCAACCAGCTGGCCGCGCAAA < 1:1057708/100‑1 ACTGCCGTGGTCATTTCGGTCACGGCAGTGGCGGAAGTTGCGCGCAACGCGATCACCACCTCGCAAACCACCAGTGAATCCAACCAGCTGGCCGCGCAAA > 2:1057708/1‑100 GTCATGGCTTCGGTGCCGTCGATGTTTTCGCTGACTTGCCGGCGGCTTTGCGCGGCCAGCTGGTTGGATTCACTGGTGGTTTGCGAGGTGGTGATCGCGTTGCGCGCAACTTCCTCCACTGCCGTGGTCATTTCGGTCACGGCAGTGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3029469‑3029319‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggAAGTTGCGCGCAACGCGATCACCACCTCGCAAACCACCAGTGAATCCAACCAGCTGGCCGCGCAAAGCCGCCGGCAAGTCAGCGAAAACATCGACGGCACCGAAGCCATGA > NC_002947/3029358‑3029468 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |