New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3303921 =	90 (0.960)	7 (0.080)	6/236	NT	7.9%	coding (514/1383 nt)	cysS	cysteine‑‑tRNA ligase
	?	NC_002947	3303954 =	78 (0.890)					coding (547/1383 nt)	cysS	cysteine‑‑tRNA ligase

ATGTCGAAGCTCTCGCCCAGGCAGCAGGTGGACATGACCGAGCACTCGATGTGCCAGCCCGGGCGACCCGGGCCCCATGGCGATTCCCAGCTTGGCTCGCCCGGCTTGACGCCCTTCCACAGGACGAAGTCGAGCGGGTCCTGCTTGGCTTCGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3304075‑3303921 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcgtcCTGTGGAAGGGCGTCAAGCCGGGCGAGCCAAGCTGGGAATCGCCATGGGGCCCGGGTCGCCCGGGCTGGCACATCGAGTGCTCGGTCATGTCCACCTGCTGCCTGGGCGAGAGCTTCGACATTCACGGTGGCGGCAGCGACCTGGAGTT  >  NC_002947/3303954‑3304102                                                                                                                                                                                                                                                                                                                  ATGTCGAAGCTCTCGCCCAGGCAGCAGGTGGACATGACCGAGCACTCGATGTGCCAGCCCGGGCGACCCGGGCCCCATGGCGATTCCCAGCTTGGCTCGCCCGGCTTGACGCCCTTCCACAGGACGAAGTCGAGCGGGTCCTGCTTGGCT                                                                                                                                                            <  2:605218/150‑1    TCGAAGCTCTCGCCCAGGCAGAAGGTGGACATGACCGAGCACTCGATGTGCCAGCCCGGGCGACCCGGGCCCCATGGCGATTCCCAGCTTGGCTCGCCCGGCTTGACGCCCTTCCACAGGACGAAGTCGAGCGGGTCCTGCTTGGCTTCG                                                                                                                                                         >  1:2321620/1‑150     CGAAGCACTCGCCCCGGCAGGAGGGGGACATGACCGAGCACTCGATGTGCCAGCCCGGGCGACCCGGGCCCCATGGCGATTCCCAGCTTGGCTCGCCCGGCTTGACGCCCTTCCACAGGACGAAGTCGAGCGGGTCCTGCTTGGCTTCGT                                                                                                                                                        <  2:1321156/150‑1      GAAGCTCTCGCCCAGGCAGCAGGTGGACATGACCGAGCACTCGATGTGCCAGCCCGGGCGACCCGGGCCCCATGGCGATTCCCAGCTTGGCTCGCCCGGCTTGACGCCCTTCCACAGGACGAAGTCGAGCGGGTCCTGCTTGGCTTCGTC                                                                                                                                                       <  2:1175176/150‑1                                    GACCGAGCACTCGATGTGCCAGCCCGGGCGACCCGGGCCCCATGGCGATTCCCAGCTTGGCTCGCCCGGCTTGACGCCCTTCCACAGGACGAAGCCAAGCAGGACCCGCTCGACTTCGTCCTGTGGAAGGGCGT                                                                                                                                         >  1:1531549/1‑134                                    GACCGAGCACTCGATGTGCCAGCCCGGGCGACCCGGGCCCCATGGCGATTCCCAGCTTGGCTCGCCCGGCTTGACGCCCTTCCACAGGACGAAGCCAAGCAGGACCCGCTCGACTTCGTCCTGTGGAAGGGCGT                                                                                                                                         <  2:1531549/134‑1                                                                                                                              GAAGTCGAGCGGGTCCTGCTTGGCTTCGTCCTGTGGAAGGGCGTCAAGCCGGGCGAGCCAAGCTGGGAATCGCCATGGGGCCCGGGTCGCCCGGGCTGGCACATCGAGTGCTCGGTCATGTCCACCTGCTGCCTGGGCGAGAGCTTCGAC                               >  1:1632476/1‑150                                                                                                                              GAAGTCGAGCGGGTCCTGCTTGGCTTCGTCCTGTGGAAGGGCGTCAAGCCGG                                                                                                                                 >  2:841480/1‑52                                                                                                                              GAAGTCGAGCGGGTCCTGCTTGGCTTCGTCCTGTGGAAGGGCGTCAAGCCGG                                                                                                                                 <  1:841480/52‑1                                                                                                                                AGTCGAGCGGGTCCTGCTTGGCTTCGTCCTGTGGAAGGGCGTCAAGCCGGGCGAGCCAAGCTGGGAATCGCCATGGGGCCCGGGTCGCCCGGGCTGGCACATCGAGTGCTCGGTCATGTCCACCTGCTGCCTGGGCGA                                         >  1:425442/1‑138                                                                                                                                AGTCGAGCGGGTCCTGCTTGGCTTCGTCCTGTGGAAGGGCGTCAAGCCGGGCGAGCCAAGCTGGGAATCGCCATGGGGCCCGGGTCGCCCGGGCTGGCACATCGAGTGCTCGGTCATGTCCACCTGCTGCCTGGGCGA                                         <  2:425442/138‑1                                                                                                                                                     CTTCGTCCTGTGGAAGGGCGTCAAGCCGGGCGAGCCAAGCTGGGAATCGCCATGGGGCCCGGGTCGCCCGGGCTGGCACATCGAGTGCTCGGTCATGTCCACCTGCTGCCTGGGCGAGAGCTTCGACATTCACGGTGGCGGCAGCGACCT        <  1:1353312/150‑1                                                                                                                                                      TTCGTCCTGTGGAAGGGCGTCAAGCCGGCCGAGCCAAGCTGGGAATCGCCATGGGGCCCGGGTCGCCCGGGCTGGCACATCGAGTGCTCGGTCATGTCCACCTGCTGCCTGGGCGAGAGCTTCGACATTCACGGTGGCGGCAGCGACCTG       <  1:367651/150‑1                                                                                                                                                        CGTCGTGTGGAAGGGCGTCAAGCCGGGCGAGCCAAGCTGGGAATCGCCATGGGGCCCGGGTCGCCCGGGCTGGCACATCGAGTGCTCGGTCATGTCCACCTGCTGCCTGGGCGAGAGCTTCGACATTCACGGTGGCGGCAGCGACCTGGA     <  2:701516/150‑1                                                                                                                                                        CGTCCTGTGGAAGGGCGTCAAGCCGGGCGAGCCAAGCTGGGAATCGCCATGGGGCCCGGGTCGCCCGGGCTGGCACATCGAGTGCTCGGTCATGTCCACCTGCTGCCTGGGCGAGAGCTTCGACATTCACGGTGGCGGCAGCGACCTGGA     <  1:1397979/150‑1                                                                                                                                                         GTCCTGTGGAAGGGCGTCAAGCCGGGCGAGCCAAGCTGGGAATCGCCATGGGGCCCGGGTCGCCCGGGCTGGCACATC                                                                            <  1:1689637/78‑1                                                                                                                                                         GTCCTGTGGAAGGGCGTCAAGCCGGGCGAGCCAAGCTGGGAATCGCCATGGGGCCCGGGTCGCCCGGGCTGGCACATC                                                                            >  2:1689637/1‑78                                                                                                                                                          TCCTGTGGAAGGGCGTCAAGCCGGGCGAGCCAAGCTGGGAATCGCCATGGGGCCCGGGTCGCCCGGGCTGGCACATCGAGTGCTCGGTCATGTCCACCTGCTGCCTGGGCGAGAGCTTCGACATTCACGGTGGCGGCAGCGACCTGGAGT   >  1:1444138/1‑150                                                                                                                                                           CCTGTGGAAGGGCGTCAAGCCGGGCGAGCCAAGCTGGGAATCGCCATGGGGCCCGGGTCGCCCGGGCTGGCACATCGAGTGCTCGGTCATGTCCACCTGCTGCCTGGGCGAGAGCTTCGACATTCACGGTGGCGGCAGCGACCTGGAGTT  >  1:1413217/1‑150                                                                                                                                                                                                                                                                                                                  ATGTCGAAGCTCTCGCCCAGGCAGCAGGTGGACATGACCGAGCACTCGATGTGCCAGCCCGGGCGACCCGGGCCCCATGGCGATTCCCAGCTTGGCTCGCCCGGCTTGACGCCCTTCCACAGGACGAAGTCGAGCGGGTCCTGCTTGGCTTCGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3304075‑3303921 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcgtcCTGTGGAAGGGCGTCAAGCCGGGCGAGCCAAGCTGGGAATCGCCATGGGGCCCGGGTCGCCCGGGCTGGCACATCGAGTGCTCGGTCATGTCCACCTGCTGCCTGGGCGAGAGCTTCGACATTCACGGTGGCGGCAGCGACCTGGAGTT  >  NC_002947/3303954‑3304102

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.