| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3310221 | 65 (0.700) | 7 (0.080) | 7/242 | NT | 9.6% | intergenic (+42/‑109) | lhgO/gabP‑III | L‑2‑hydroxyglutarate oxidase/gamma‑aminobutyrate permease |
| ? | NC_002947 | = 3310250 | 69 (0.760) | intergenic (+71/‑80) | lhgO/gabP‑III | L‑2‑hydroxyglutarate oxidase/gamma‑aminobutyrate permease | |||||
GCCATCCCGATCGGCGCCTACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCGTTTTACTCAACCC‑‑‑‑‑G‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3310069‑3310221‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccc‑‑‑‑‑gCCCTGCCCTGAATGGTGAGCAGGGCAGTACGGGTTGAGTAAAACGAAACCGCAGAAGGTGTTACCCGGCTGTCAGCTGGCAGCCCTCTGGTTGGCCGACAGGTCGGCCTTGGGGAAGCTGCCGCCCTGCAGGCCGACCTGCTCGCACAC < NC_002947/3310250‑3310102 GCCATCCCGATCGGCGCCTACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCGTTTTACTCAAC < 2:1472022/150‑1 CCATCCCGATCGGCGCCTACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCGTTTTACTCAACC > 2:466621/1‑150 GTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCGTTTTACTCAACCC‑‑‑‑‑GCCCTGCCCTGAATGGTGAGCAGGGCAGTACGG < 2:1585089/150‑1 TCGGCCTGCCGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGCCAGCCGGGTAACACCTTCTGCGGTTTCGTTTTACTCAACCC‑‑‑‑‑GCCCTGCCCTGAATGGTGAGCAGGGCAGTACGGGTTGAGTAAAA < 2:852956/150‑1 AACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCGTTTTACTCAACCC‑‑‑‑‑GCCCTGCCCTGAATGGTGAGCAGGGCAGTACGGGT > 1:1757373/1‑97 AACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCGTTTTACTCAACCC‑‑‑‑‑GCCCTGCCCTGAATGGTGAGCAGGGCAGTACGGGT < 2:1757373/97‑1 CAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCGTTTTACTCAACCCGTACTGCCCTGCCCTGAATGGTGAGCAGGGCAGTACGGGTT < 1:1878539/89‑1 CAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCGTTTTACTCAACCCGTACTGCCCTGCCCTGAATGGTGAGCAGGGCAGTACGGGTT > 2:1878539/1‑89 TGCGGTTTCGTTTTACTCAACCC‑‑‑‑‑GCCCTGCCCTGAATGGTGAGCAGGGCAGTACGGGTTGAGTAAAACGAAACCGCAGAAGGTGTTACCCGGCTGTCAGCTGGCAGCCCTCTGGTTGGCCGACAGGTCGGCCTTGGGGAAGCTGCCGCCC > 2:1755282/1‑150 GCCCTGCCCTGAATGGTGAGCAGGGCAGTACGGGTTGAGTAAAACGAAACCGCAGAAGGTGTTACCCGGCTGTCAGCTGGCAGCCCTCTGGTTGGCCGACAGGTCGGCCTTGGGGAAGCTGCCGCCCTGGAGGCCGACCTGCTCGCACAC < 1:1213378/150‑1 GCCCTGCCCTGAATGGTGAGCAGGGCAGTACGGGTTGAGTAAAACGAAACCGCAGAAGGTGTTACCCGGCTGTCAGCTGGCAGCCCTCTGGTTGGCCGACAGGTCGGCCTTGGGGAAGCTGCCGCCCTGCAGGCCGACCTGCTCGCACAC < 1:1215583/150‑1 GCCATCCCGATCGGCGCCTACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCGTTTTACTCAACCC‑‑‑‑‑G‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3310069‑3310221‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccc‑‑‑‑‑gCCCTGCCCTGAATGGTGAGCAGGGCAGTACGGGTTGAGTAAAACGAAACCGCAGAAGGTGTTACCCGGCTGTCAGCTGGCAGCCCTCTGGTTGGCCGACAGGTCGGCCTTGGGGAAGCTGCCGCCCTGCAGGCCGACCTGCTCGCACAC < NC_002947/3310250‑3310102 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |