| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3380890 = | 105 (1.130) | 6 (0.070) | 6/232 | NT | 6.0% | coding (519/999 nt) | tnpT‑I | cointegrate resolution protein T |
| ? | NC_002947 | 3380917 = | 90 (1.040) | coding (546/999 nt) | tnpT‑I | cointegrate resolution protein T | |||||
TCAGTTCGTCCTGCTTGATTATCAAGGTCTGCTGCAGTTGCCGCAGTTCCAGTTGCAGTTGTTGCACCTGCGACTCGTGTCGACGCTGTTCCTGCTCGCGCTGCTCCTTGCTGGCCTGACGATAGTGCTCCAAAGCATC‑ACGGGCATGTTGATGCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3381047‑3380890‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgatgctttGGAGCACTATCGTCAGGCCAGCAAGGAGCAGCGCGAGCAGGAACAGCGTCGACACGAGTCGCAGGTGCAACAACTGCAACTGGAACTGCGGCAACTGCAGCAGACCTTGATAATCAAGCAGGACGAACTGACGCAGCTGAACCGCGA > NC_002947/3380917‑3381063 TCAGTTCGTCCTGCTTGATTATCAAGGTCTGCTGCAGTTGCCGCAGTTCCAGTTGCAGTTGTTGCACCTGCGACTCGTGTCGACGCTGTTCCTGCTCGCGCTGCTCCTTGCTGGCCTGACGATAGTGCTCCAAAGCATC‑ACGGGCATGTT > 1:1427042/1‑150TCAGTTCGTCCTGCTTGATTATCAAGGTCTGCTGCAGTTGCCGCAGTTCCAGTTGCAGTTGTTGCACCTGCGACTCGTGTCGACGCTGTTCCTGCTCGCGCTGCTCCTTGCTGGCCTGACGATAGTGCTCCAAAGCATC‑ACGGGCATGTT > 2:2430932/1‑150 AGTTCGTCCTGCTTGATTATCAAGGTCTCCTGCAGTTGCCGCAGTTCCGGTTGCAGTTGTTGCACCTGCGACTCGTGTCGACGCTGTTCCTGCTCGCGCTGCTCCTTGCTGGCCTGACGATCGTGCTCCAAAGCATC‑ACGTGCATGTTta < 2:1970548/150‑3 GTTCGTCCTGCTTGATTATCAAGGTCTGCTGCAGTTGCCGCAGTTCCAGTTGCAGTTGTTGCACCTGCGACTCGTGTCGACGCTGTTCCTGCTCGCGCTGCTCCTTGCTGGCCTGACGATAGTGCTCCAAAGCATC‑ACGGGCATGTTGAT < 2:1078138/150‑1 TTCGTCCTGCTTGATTATCAAGGTCTGCTGCAGTTGCCGCAGTTCCAGTTGCAGTTGTTGCACCTGCGACTCGTGTCGACGCTGTTCCTGCTCGCGCTGCTCCTTGCTGGCCTGACGATAGTGCTCCAAAGCATC‑ACGGGCATGTTGATG < 2:2205885/150‑1 TCGTCCTGCTTGATTATCAAGGTCTGCTGCAGTTGCCGCAGTTCCAGTTGCAGTTGTTGCACCTGCGACTCGTGTCGACGCTGTTCCTGCTCGCGCTGCTCCTTGCTGGCCTGACGATAGTGCTCCAAAGCATC‑ACGGGCATGTTGATGC < 1:545789/150‑1 TCCTGCTTGATTATCAAGGTCTGCTGCAGTTGCCGCAGTTCCAGTTGCAGTTGTTGCACCTGCGACTCGTGTCGACGCTGTTCCTGCTCGCGCTGCTCCTTGCTGGCCTGACGATAGTGCTCCAAAGCATC‑ACGGGCATGTTGATGCTTT > 2:2177352/1‑150 CTGCAGTTGCCGCAGTTCCAGTTGCAGTTGTTGCACCTGCGACTCGTGTCGACGCTGTTCCTGCTCGCGCTGCTCCTTGCTGGCCTGACGATAGTGCTCCAAAGCATCAACATGCCCG‑TGATGCTTTGGAGCACTAT < 1:2029093/137‑1 CTGCAGTTGCCGCAGTTCCAGTTGCAGTTGTTGCACCTGCGACTCGTGTCGACGCTGTTCCTGCTCGCGCTGCTCCTTGCTGGCCTGACGATAGTGCTCCAAAGCATCAACATGCCCG‑TGATGCTTTGGAGCACTAT > 2:2029093/1‑137 TCGACGCTGTTCCTGCTCGCGCTGCTCCTTGCTGGCCTGACGATAGTGCTCCAAAGCATCAACATGCCCG‑TGATGCTTTGGAGCACTATC > 2:539611/1‑90 TCGACGCTGTTCCTGCTCGCGCTGCTCCTTGCTGGCCTGACGATAGTGCTCCAAAGCATCAACATGCCCG‑TGATGCTTTGGAGCACTATC < 1:539611/90‑1 TCGACGCTGTTCCTGCTCGCGCTGCTCCTTGCTGGCCTGACGATAGTGCTCCAAAGCATC‑ACGGGCATGTTGATG > 2:480816/1‑75 TCGACGCTGTTCCTGCTCGCGCTGCTCCTTGCTGGCCTGACGATAGTGCTCCAAAGCATC‑ACGGGCATGTTGATG < 1:480816/75‑1 GCTCGCGCTGCTCCTTGCTGGCCTGACGATAGTGCTCCAAAGCATC‑ACGGGCATGTTGA > 1:1244859/1‑59 GCTCGCGCTGCTCCTTGCTGGCCTGACGATAGTGCTCCAAAGCATC‑ACGGGCATGTTGA < 2:1244859/59‑1 TGCTCCTTGCTGGCCTGACGATAGTGCTCCAAAGCATC‑ACGGGCATGTTGAT < 1:1246029/52‑1 TGCTCCTTGCTGGCCTGACGATAGTGCTCCAAAGCATC‑ACGGGCATGTTGAT > 2:1246029/1‑52 TCCAAAGCATC‑ACGGGCATGTTGATGCTTTGGAGCACTATCGTCAGGCCAGCAAGGAGCAGCGCGAGCAGGAACAGCGTCGACACGAGTCGCAGGTGCAACAACTGCAACTGGAACTGCGGCAACTGCAGCAGACCTTGATAATCAAGCA > 1:2223140/1‑150 CAAAGCATC‑ACGGGCATGTTGATGCTTTGGAGCACTATCGTCAGGCCAGCAAGGAGCAGCGCGAGCAGGAACAGCGTCGACACGAGTCGCAGGTGCAACAACTGCAACTGGAACTGCGGCAACTGCAGCAGACCTTGATAATCAAGCAGG > 1:334291/1‑150 TGATGCTTTGGAGCACTATCGTCAGGCCAGCAAGGAGCAGCGCGAGCAGGAACAGCGTCGACACGAGTCGCAGGTGCAACAACTGCAACTGGAACTGCGGCAACTGCAGCAGACCTTGATAATCAAGCAGGACGAACTGACGCAGCTGAA > 1:2098467/1‑150 TTTGGAGCACTATCGTCAGGCCAGCAAGGAGCAGCGCGAGCAGGAACAGCGTCGACACGAGTCGCAGGTGCAACAACTGCAACTGGAACTGCGGCAACTGCAGCAGACCTTGATAATCAAGCAGGACGAACTGACGCAGCTGAACCGCGA > 2:1129633/1‑150 TTTGGAGCACTATCGTCAGGCCAGCAAGGAGCAGCGCGAGCAGGAACAGCGTCGACACGAGTCGCAGGTGCAACAACTGCAACTGGAACTGCGGCAACTGCAGCAGACCTTGATAATCAAGCAGGACGAACTGACGCAGCTGAACCGCGA > 2:2419070/1‑150 TCAGTTCGTCCTGCTTGATTATCAAGGTCTGCTGCAGTTGCCGCAGTTCCAGTTGCAGTTGTTGCACCTGCGACTCGTGTCGACGCTGTTCCTGCTCGCGCTGCTCCTTGCTGGCCTGACGATAGTGCTCCAAAGCATC‑ACGGGCATGTTGATGCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3381047‑3380890‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgatgctttGGAGCACTATCGTCAGGCCAGCAAGGAGCAGCGCGAGCAGGAACAGCGTCGACACGAGTCGCAGGTGCAACAACTGCAACTGGAACTGCGGCAACTGCAGCAGACCTTGATAATCAAGCAGGACGAACTGACGCAGCTGAACCGCGA > NC_002947/3380917‑3381063 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |