New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3650560	86 (0.920)	5 (0.060)	4/238	NT	5.5%	coding (306/609 nt)	PP_3216	cysteine dioxygenase
	?	NC_002947	= 3650570	89 (1.000)					coding (296/609 nt)	PP_3216	cysteine dioxygenase

ATTGCTCACCTGATGAATGTCGCCGATGCGCGGCGACACCGCTTCCACCTGGCCGGGCACCAGACGGATGGGGGCCCCCTCTTGCAACAAAGCGCCTCTGGCGTCACGCACGAATCCCTGAGCGTGCTCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3650428‑3650560 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggcaTGCTGCGCGGTGCCGAGCACGCTCAGGGATTCGTGCGTGACGCCAGAGGCGCTTTGTTGCAAGAGGGGGCCCCCATCCGTCTGGTGCCCGGCCAGGTGGAAGCGGTGTCGCCGCGCATCGGCGACATTCATCAGGTGAGCAATGCGTTC  <  NC_002947/3650570‑3650422                                                                                                                                                                                                                                                                                            ATTGCTCACCTGATGAATGTCGCCGATGCGCGGCGACACCGCTTCCACCTGGCCGGGCACCAGACGGATGGGGGCCCCCTCTTGCAACAAAGCGCCTCTGGCGTCACGCACGAATCCCTGAGCGTGCTCGGCATGCTGCGCGGTGCCGAG                                                                                                                                      <  2:1599803/150‑1                                                                                           AGCGCCTCTGGCGTCACGCACGAATCCCTGAGCGTGCTCGGCATGCTGCGCGGTGCCGA                                                                                                                                       >  1:1978302/1‑59                                                                                           AGCGCCTCTGGCGTCACGCACGAATCCCTGAGCGTGCTCGGCATGCTGCGCGGTGCCGA                                                                                                                                       <  2:1978302/59‑1                                                                                                     GCGTCACGCACGAATCCCTGAGCGTGCTCGGCATGCTGCGCGGTGCCGA                                                                                                                                       >  1:169012/1‑49                                                                                                     GCGTCACGCACGAATCCCTGAGCGTGCTCGGCATGCTGCGCGGTGCCGA                                                                                                                                       <  2:169012/49‑1                                                                                                                                   GCATGCTGCGCGGTGCCGAGCACGCTCAGGGATTCGTGCGTGACGCCAGAGGCGCTTTGTTGCAAGAGGGGGCCCCCATCCGTCTGGTGCCCGGCCAGGTGGAAGCGGTGTCGCCGCGCATCGGCGACATTCATCAGGTGAGCAAT        <  1:800181/146‑1                                                                                                                                   GCATGCTGCGCGGTGCCGAGCACGCTCAGGGATTCGTGCGTGACGCCAGAGGCGCTTTGTTGCAAGAGGGGGCCCCCATCCGTCTGGTGCCCGGCCAGGTGGAAGCGGTGTCGCCGCGCATCGGCGACATTCATCAGGTGAGCAAT        >  2:800181/1‑146                                                                                                                                     ATGCTGCGCGGTGCCGAGCACGCTCAGGGATTCGTGCGTGACGCCAGAGGCGCTTTGTTGCAAGAGGGGGCCCCCATCCGTCTGGTGCCCGGCCAGGTGGAAGCGGTGTCGCCGCGCATCGGCGACATTCATCAGGTGAGCAATGCGTTC  <  1:2257893/150‑1                                                                                                                                     ATGCTGCGCGGTGCCGAGCACGCTCAGGGATTCGTGCGTGACGCCAGAGGCGCTTTGTTGCAAGAGGGGGCCCCCATCCGTCTGGTGCCCGGCCAGGTGGAAGCGGTGTCGCCGCGCATCGGCGACATTCATCAGGTGAGCAATGCGTTC  <  1:994542/150‑1                                                                                                                                                                                                                                                                                            ATTGCTCACCTGATGAATGTCGCCGATGCGCGGCGACACCGCTTCCACCTGGCCGGGCACCAGACGGATGGGGGCCCCCTCTTGCAACAAAGCGCCTCTGGCGTCACGCACGAATCCCTGAGCGTGCTCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3650428‑3650560 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggcaTGCTGCGCGGTGCCGAGCACGCTCAGGGATTCGTGCGTGACGCCAGAGGCGCTTTGTTGCAAGAGGGGGCCCCCATCCGTCTGGTGCCCGGCCAGGTGGAAGCGGTGTCGCCGCGCATCGGCGACATTCATCAGGTGAGCAATGCGTTC  <  NC_002947/3650570‑3650422

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.