| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3820929 = | 76 (0.810) | 5 (0.060) | 5/240 | NT | 6.3% | intergenic (+11/+32) | endA/ptxD | endonuclease I/phosphonate dehydrogenase |
| ? | NC_002947 | 3820967 = | 76 (0.850) | coding (957/963 nt) | ptxD | phosphonate dehydrogenase | |||||
AGCGACCCCGCATATCGGCTCGGCGACCGAGGAAACCCGCCAGGCCATGGCGCGTTGCGCGGTGGACAACCTGCTCAGCGCGCTGGCCGGTGAGCGGCCGGTAAACCTGGTCAACGGCTGACGCGCCCCCGCTCCCACAGGGGCCGCGCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3821081‑3820929‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccGTTGACCAGGTTTACCGGCCGCTCACCGGCCAGCGCGCTGAGCAGGTTGTCCACCGCGCAACGCGCCATGGCCTGGCGGGTTTCCTCGGTCGCCGAGCCGATATGCGGGGTCGCTACCACGTTATCCAGCTGCAACAGCGGCGAGTCGA > NC_002947/3820967‑3821115 AGCGACCCCGCATATCGGCTCGGCGACCGAGGAAACCCGCCAGGCCATGGCGCGTTGCGCGGTGGACAACCTGCTCAGCGCGCTGGCCGGTGAGCGGCCGGTAAACCTGGTCAACGGCTGACGCGCCCCCGCTCCCACAGGGGCCGCGCA > 1:1622148/1‑150 ACCCGCCAGGCCATGGCGCGTTGCGCGGTGGACAACCTGCTCAGCGCGCTGGCCGGTGAGCGGCCGGTAAACCTGGTCAACGGCTGACGCGCCCCCGCTCCCACAGGGGCCGCGCA < 1:401581/116‑1 ACCCGCCAGGCCATGGCGCGTTGCGCGGTGGACAACCTGCTCAGCGCGCTGGCCGGTGAGCGGCCGGTAAACCTGGTCAACGGCTGACGCGCCCCCGCTCCCACAGGGGCCGCGCA > 2:401581/1‑116 AACGGCTGACGCGCCCCCGCTCCCACAGGGGCCGCGCAGCCGTTGACCAGGTTTACCGGCCGCTCACCGGCCAGCGCGCTGAGCAGGTTGTCCACCGCGCAACGCGCCATGGCCTGGCGGGTTTCCTCGGTCGCCGAGCCGATATGCGGG > 1:822436/1‑150 TGACGCGCCCCCGCTCCCACAGGGGCCGCGCAGCCGTTGACCAGGTTTACCGGCCGCTCACCGGCCAGCGCGCTGAGCAGGTTGTCCACCGCGCAACGCGCCATGGCCTGGCGGGTTTCCTCGGTCGCCGAGCCGATATGCGGGGTCGCT > 1:1176942/1‑150 GACGCGCCCCCGCTCCCACAGGGGCCGCGCAGCCGTTGACCAGGTTTACCGGCCGCTCACCGGCCAGCGCGCTGAGCAGGTTGTCCACCGCGCAACGCGCCATGGCCTGGCGGGT > 1:1689865/1‑115 GACGCGCCCCCGCTCCCACAGGGGCCGCGCAGCCGTTGACCAGGTTTACCGGCCGCTCACCGGCCAGCGCGCTGAGCAGGTTGTCCACCGCGCAACGCGCCATGGCCTGGCGGGT < 2:1689865/115‑1 CGCCCCCGCTCCCACAGGGGCCGCGCAGCCGTTGACCAGGTTTACCGGCCGCTCACCGGCCAGCGCGCTGAGCAGGTTGTCCACCGCGCAACGCGCCATGGCCTGGCGGGTTTCCTCGGTCGCCGAGCCGATATGCGGGGTCGCTACCAC < 2:1176942/150‑1 AGCCGTTGACCAGGTTTACCGGCCGCTCACCGGCCAGCGCGCTGAGCAGGTTGTCCACCGCGCAACGCGCCATGGCCTGGCGGGTTTCCTCGGTCGCCGAGCCGATATGCGGGGTCGCTACCACGTTATCCAGCTGCAACAGCGGCGAGT < 2:2261419/150‑1 CCGTTGACCAGGTTTACCGGCCGCTCACCGGCCAGCGCGCTGAGCAGGTTGTCCACCGCGCAACGCGCCATGGCCTGGCGGGTTTCCTCGGTCGCCGAGCCGATATGCGGGGTCGCTACCACGTTATCCAGCTGCAACAGCGGCGAGTCG > 1:1521618/1‑150 CGTTGACCAGGTTTACCGGCCGCTCACCGGCCAGCGCGCTGAGCAGGTTGTCCACCGCGCAACGCGCCATGGCCTGGCGGGTTTCCTCGGTCGCCGAGCCGATATGCGGGGTCGCTACCACGTTATCCAGCTGCAACAGCGGCGAGTCGA > 2:1305477/1‑150 AGCGACCCCGCATATCGGCTCGGCGACCGAGGAAACCCGCCAGGCCATGGCGCGTTGCGCGGTGGACAACCTGCTCAGCGCGCTGGCCGGTGAGCGGCCGGTAAACCTGGTCAACGGCTGACGCGCCCCCGCTCCCACAGGGGCCGCGCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3821081‑3820929‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccGTTGACCAGGTTTACCGGCCGCTCACCGGCCAGCGCGCTGAGCAGGTTGTCCACCGCGCAACGCGCCATGGCCTGGCGGGTTTCCTCGGTCGCCGAGCCGATATGCGGGGTCGCTACCACGTTATCCAGCTGCAACAGCGGCGAGTCGA > NC_002947/3820967‑3821115 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |