New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3895858	85 (0.910)	10 (0.110)	6/242	NT	10.4%	coding (465/582 nt)	PP_3438	membrane protein
	?	NC_002947	= 3895871	90 (1.000)					coding (478/582 nt)	PP_3438	membrane protein

GATGCAGTGGCTGAACCCCAAAGCCTGGTTGGCAGCCGTTGCCGGGGTGGGTGCCTACACCGGCGGTGAACAGCACTTGCTGTGGCTGTTTACCTGGATCTACGGGCCGATCTGTTTCATCTCGGTAGCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3895726‑3895858 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcCGGCCCAGGCCCAGCAGGCTACCGAGATGAAACAGATCGGCCCGTAGATCCAGGTAAACAGCCACAGCAAGTGCTGTTCACCGCCGGTGTAGGCACCCACCCCGGCAACGGCTGCCAACCAGGCTTTGGG  <  NC_002947/3895871‑3895742                                                                                                                                                                                                                                                                         GATGCAGTGGCTGAACCCCAAAGCCTGGTTGGCAGCCGACGCCGGGGTGGGTGCCTACACCGGCGGTGAACAGCACTTGCTGTGGCTGTTTACCTGGATCTACGGGCCGATCTGTTTCATCTCGGTAGCCTGCCGGCCCAGGCCCAGCAG                                                                                                                   <  1:1706998/150‑1                                    CCGTTGCCGGGGTGGGTGCCTACACCGGCGGTGAACAGCACTTGCTGTGGCTGTTTACCTGGATCTACGGGCCGATCTGTTTCATCTCGGTAGCCTGCCGGCCCAGGCCCAGCAGG                                                                                                                  >  1:3385/1‑116                                    CCGTTGCCGGGGTGGGTGCCTACACCGGCGGTGAACAGCACTTGCTGTGGCTGTTTACCTGGATCTACGGGCCGATCTGTTTCATCTCGGTAGCCTGCCGGCCCAGGCCCAGCAGG                                                                                                                  <  2:3385/116‑1                                                                                                             GATCTGTTTCATCTCGGTAGCCTGCTGGGCCTGGGCCGGCAGGCTACCGAGATGAAACAGATCGGCCCGTAGATCCAGGTAAACAGCCACAGCAAGT                                                            >  1:1000720/1‑97                                                                                                             GATCTGTTTCATCTCGGTAGCCTGCTGGGCCTGGGCCGGCAGGCTACCGAGATGAAACAGATCGGCCCGTAGATCCAGGTAAACAGCCACAGCAAGT                                                            >  1:1446588/1‑97                                                                                                             GATCTGTTTCATCTCGGTAGCCTGCTGGGCCTGGGCCGGCAGGCTACCGAGATGAAACAGATCGGCCCGTAGATCCAGGTAAACAGCCACAGCAAGT                                                            >  1:1446687/1‑97                                                                                                             GATCTGTTTCATCTCGGTAGCCTGCTGGGCCTGGGCCGGCAGGCTACCGAGATGAAACAGATCGGCCCGTAGATCCAGGTAAACAGCCACAGCAAGT                                                            <  2:1000720/97‑1                                                                                                             GATCTGTTTCATCTCGGTAGCCTGCTGGGCCTGGGCCGGCAGGCTACCGAGATGAAACAGATCGGCCCGTAGATCCAGGTAAACAGCCACAGCAAGT                                                            <  2:1446588/97‑1                                                                                                             GATCTGTTTCATCTCGGTAGCCTGCTGGGCCTGGGCCGGCAGGCTACCGAGATGAAACAGATCGGCCCGTAGATCCAGGTAAACAGCCACAGCAAGT                                                            <  2:1446687/97‑1                                                                                                                  GTTTCATCTCGGTAGCCTGCTGGGCCTGGGCCGGCAGGCTACCGAGATGAAACAGATCGGCCCGTAGATCCAGGTAAACAGCCACAGCAAGTGCTGTTCACCGCCGGTGTAGGCACCCACCCCGGCAACGGCTGCCAACCAGGCTTTGGG  >  1:1960933/1‑150                                                                                                                                     CCGGCCCAGGCCCAGCAGGCTACCGAGATGAAACAGATCGGCCCGTAGATCCAGGTAAACAGCCACAGCAAGTGCTGTTCACCGCCGGTGTAGGCACCCACCCCGGCAACGGCT                   >  1:989417/1‑114                                                                                                                                     CCGGCCCAGGCCCAGCAGGCTACCGAGATGAAACAGATCGGCCCGTAGATCCAGGTAAACAGCCACAGCAAGTGCTGTTCACCGCCGGTGTAGGCACCCACCCCGGCAACGGCT                   <  2:989417/114‑1                                                                                                                                                                                                                                                                         GATGCAGTGGCTGAACCCCAAAGCCTGGTTGGCAGCCGTTGCCGGGGTGGGTGCCTACACCGGCGGTGAACAGCACTTGCTGTGGCTGTTTACCTGGATCTACGGGCCGATCTGTTTCATCTCGGTAGCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3895726‑3895858 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcCGGCCCAGGCCCAGCAGGCTACCGAGATGAAACAGATCGGCCCGTAGATCCAGGTAAACAGCCACAGCAAGTGCTGTTCACCGCCGGTGTAGGCACCCACCCCGGCAACGGCTGCCAACCAGGCTTTGGG  <  NC_002947/3895871‑3895742

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.