| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3963022 = | 88 (0.940) | 4 (0.050) | 4/228 | NT | 5.1% | intergenic (+24/+93) | PP_3492/PP_3493 | acyl‑CoA dehydrogenase/LysR family transcriptional regulator |
| ? | NC_002947 | 3963084 = | 68 (0.800) | intergenic (+86/+31) | PP_3492/PP_3493 | acyl‑CoA dehydrogenase/LysR family transcriptional regulator | |||||
GGAGCAACTGCCGGCGCTGTTCGAGGGGCATGCCAGGGTGGTGGATGATGCGCGGTATTGGCGCTGAGGCGAGAAGTTTGCCGCGGTGACATTCCTGTGGGAGCGGGCGCGCCCGCGAACACCGGCAAAGCCGGTGCCCTCCACCGCGTCGCCCGCTCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3963181‑3963022‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcccgctcccACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGCCCCTCGAACAGCGCCGGCAGTTGCTCCTTGAGGTAGTCGATCCAGGTGCGCACCTTGGCGTCCAGGTAATGGCGTGAC > NC_002947/3963084‑3963232 GGAGCAAGTGCCGGCGCTGTTCGAGGGGGATGCCAGGGTGGTGGATGATGCGCGGTATTGGCGCTGAGGCGAGAAGTTTGCCGCGGTGACATTCCTGTGGGAGCGGGCGCGCCCGCGAACACCGGCAAAGCCGGTGCCCTCCACCGCGTC < 2:896515/150‑1 GCAACTGCCGGCGCTGTTCGAGGGGCATGCCAGGGTGGTGGATGATGCGCGGTATTGGCGCTGAGGCGAGAAGTTTGCCGCGGTGACATTCCTGTGGGAGCGGGCGCGCCCGCGAACACCGGCAAAGCCGGTGCCCTCCACCGCGTCGCC < 2:773127/150‑1 AACTGCCGGCGCTGTTCGAGGGGCATGCCAGGGTGGTGGATGATGCGCGGTATTGGCGCTGAGGCGAGAAGTTTGCCGCGGTGACATTCCTGTGGGAGCGGGCGCGCCCGCGAACACCGGCAAAGCCGGTGCCCTCCACCGCGTCGCCCG > 1:1823150/1‑150 CTGCCGGCGCTGTTCGAGGGGCATGCCAGGGTGGTGGATGATGCGCGGTATTGGCGCTGAGGCGAGAAGTTTGCCGCGGTGACATTCCTGTGGGAGCGGGCGCGCCCGCGAACACCGGCAAAGCCGGTGCCCTCCACCGCGTCGCCCGCT > 2:1472229/1‑150 TGCCGGCGCTGTTCGAGGGGCATGCCAGGGTGGTGGATGATGCGCGGTATTGGCGCTGAGGCGAGAAGTTTGCCGCGGTGACATTCCTGTGGGAGCGGGCGCGCCCGCGAACACCGGCAAAGCCGGTGCCCTACACCGCGTCGCCCGCTC < 2:2292345/150‑1 ATTCCTGTGGGAGCGGGCGCGCCCGCGAACACCGGCAAAGCCGGTGCCCTCCACCGCGTCGCCCGCTCCCCCAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGCCCCTCGAAC > 2:1258212/1‑150 GCGGGCGCGCCCGCGAACACCGGCAAAGCCGGTGCCCTCCACCGCGTCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGCCCCTCGAACAGCGCCGGCAGT > 1:1647310/1‑150 GCGCGCCCGCGAACACCGGCAAAGCCGGTGCCCTCCACCGCGTCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGC < 1:38951/121‑1 GCGCGCCCGCGAACACCGGCAAAGCCGGTGCCCTCCACCGCGTCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGC > 2:38951/1‑121 GCGTCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGCCCCTCGAACAGCGCCGGCAGTTGCTCCTTGAGGTAGTCGATCCAGGTGCGCACCTTGGCGTCCA < 2:1647310/150‑1 CCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGCCCCTCGAACAGCGCCGGCAGTTGCTCCTTGAGGTAGTCGATCCAGGTGCGCACCTTGGCGTCCAGGTAAT > 2:1672386/1‑150 CCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGCCCCTCGAACA < 1:445445/90‑1 CCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGCCCCTCGAACA > 2:445445/1‑90 CCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGCCCCTCGAACAGCGCCGGCAGTTGCTCCTTGAGGTAGTCGATCCAGGTGCGCACCTTGGCGTCCAGGTAATG > 2:2078730/1‑150 CCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGCCCCTCGAACAGCGCCGGCAGTTGCTCCTTGAGGTAGTCGATCCAGGTGCGCACCTTGGCGTCCAGGTAATG > 1:2364068/1‑150 CCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGCCCCTCGAACAGCGCCGGCAGTTGCTCCTTGAGGTAGTCGATCCAGGTGCGCACCTTGGCGTCCAGGTAATGGCGTGA > 1:322474/1‑150 CCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGCCCCTCGAACAGCGCCGGCAGTTGCTCCTTGAGGTAGTCGATCCAGGTGCGCACCTTGGCGTCCAGGTAATGGCGTGA < 1:98562/150‑1 CACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGCCCCTCGAACAGCGCCGGCAGTTGCTCCTTGAGGTAGTCGATCCAGGTGCGCACCTTGGCGTCCAGGTAATGGCGTGAC < 2:322474/150‑1 CACAGGAATGCCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGCCC > 2:1308565/1‑74 CACAGGAATGCCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGCCC < 1:1308565/74‑1 GGAGCAACTGCCGGCGCTGTTCGAGGGGCATGCCAGGGTGGTGGATGATGCGCGGTATTGGCGCTGAGGCGAGAAGTTTGCCGCGGTGACATTCCTGTGGGAGCGGGCGCGCCCGCGAACACCGGCAAAGCCGGTGCCCTCCACCGCGTCGCCCGCTCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3963181‑3963022‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcccgctcccACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGCCCCTCGAACAGCGCCGGCAGTTGCTCCTTGAGGTAGTCGATCCAGGTGCGCACCTTGGCGTCCAGGTAATGGCGTGAC > NC_002947/3963084‑3963232 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |