| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4039105 | 70 (0.750) | 5 (0.050) | 4/244 | NT | 6.7% | intergenic (+11/‑83) | PP_3559/PP_3560 | glycine betaine ABC transporter permease/LysR family transcriptional regulator |
| ? | NC_002947 | = 4039142 | 70 (0.770) | intergenic (+48/‑46) | PP_3559/PP_3560 | glycine betaine ABC transporter permease/LysR family transcriptional regulator | |||||
GCCCGTGGATTGGGTGAAGATGTGCTGGCGGGAATCCAGACCTTGAATGTTGGCCAAGGGATGGAGGCCGGGCTGGCAATTGTCGCCCTGGCCATGGTGATCGACCGGATCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4038954‑4039105‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcCCGGCCCTCTCGCAGCACAAGGCTGCTTCCAGGCCTTGCCGATACGGCTCAGCGACTGCTACGCCCATAGGCCTGGCTGATCCGGTCGATCACCATGGCCAGGGCGACAATTGCCAGCCCGGCCTCCATCCCTTGGCCAACATTCAA < NC_002947/4039142‑4038996 GCCCGTGGATTGGGTGAAGATGTGCTGGCGGGAATCCAGACCTTGAATGTTGGCCAAGGGATGGAGGCCGGGCTGGCAATTGTCGCCCTGGCCATGGTGATCGACCGGATCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCG < 2:2177459/150‑1 CCCGTGGATTGGGCGAAGATGTGCTGGCGGGAACCCAGCCCTTGAATGTTGGCCAAGGGATGGAGGCTGGGCTGGCAATTGCCGCCCTGGCCATGGTGATCGACCGGATCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGG < 2:1124449/150‑1 TTGAATGTTGGCCAAGGGATGGAGGCCGGGCTGGCAATTGTCGCCCTGGCCATGGTGATCGACCGGATCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGCAAGGCCCTCTCGCAGCACAAGGCTGCTTCCAGGCCTTGCC < 1:2129716/150‑1 CCAAGGGATGGAGGCCGGGCTGGCAATTGTCGCCCTGGCCATGGTGATCGACCGGATCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGCCCGGCCCTCTCGCAGCACAAGGCTGCTTCCAGGCCTTGC < 1:154608/138‑1 CCAAGGGATGGAGGCCGGGCTGGCAATTGTCGCCCTGGCCATGGTGATCGACCGGATCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGCCCGGCCCTCTCGCAGCACAAGGCTGCTTCCAGGCCTTGC > 2:154608/1‑138 GCAATTGTCGCCCTGGCCATGGTGATCGACCGGATCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGCCCGGCCCTCTCGCAGCACAAGGCTGCTTCCAGGCCTTGC > 1:950023/1‑116 GCAATTGTCGCCCTGGCCATGGTGATCGACCGGATCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGCCCGGCCCTCTCGCAGCACAAGGCTGCTTCCAGGCCTTGC < 2:950023/116‑1 GGCCCGGCCCTCTCGCAGCACAAGGCTGCTTCCAGGCCTTGCCGATACGGCTCAGCGACTGCTACGCCCATAGGCCTGGCTGATCCGGTCGATCACCATGGCCAGGGCGACAATTGCCAGCCCGGCCTCCATCCCTTGGCCAACATTCAA < 1:260249/150‑1 GGCCCGGCCCTCTCGCAGCACAAGGCTGCTTCCAGGCCTTGCCGATACGGCTCAGCGACTGCTACGCCCATAGGCCTGGCTGATCCGGTCGATCACCATGGCCAGGGCGACAATTGCCAGCCCGGCCTCCATCCCTTGGCCAACATTCAA < 2:1143169/150‑1 GCCCGGCCCTCTCGCAGCACAAGGCTGCTTCCAGGCCTTGCCGATACGGCTCAGCGACTGCTACGCCCATAGGCt > 1:2377693/1‑74 GCCCGGCCCTCTCGCAGCACAAGGCTGCTTCCAGGCCTTGCCGATACGGCTCAGCGACTGCTACGCCCATAGGCC < 2:2377693/75‑1 GCCCGTGGATTGGGTGAAGATGTGCTGGCGGGAATCCAGACCTTGAATGTTGGCCAAGGGATGGAGGCCGGGCTGGCAATTGTCGCCCTGGCCATGGTGATCGACCGGATCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4038954‑4039105‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcCCGGCCCTCTCGCAGCACAAGGCTGCTTCCAGGCCTTGCCGATACGGCTCAGCGACTGCTACGCCCATAGGCCTGGCTGATCCGGTCGATCACCATGGCCAGGGCGACAATTGCCAGCCCGGCCTCCATCCCTTGGCCAACATTCAA < NC_002947/4039142‑4038996 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |