| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4114361 | 87 (0.930) | 10 (0.120) | 10/224 | NT | 10.2% | intergenic (+64/+82) | PP_3619/ycaO | hypothetical protein/ribosomal protein S12 methylthiotransferase accessory factor |
| ? | NC_002947 | = 4114406 | 99 (1.180) | intergenic (+109/+37) | PP_3619/ycaO | hypothetical protein/ribosomal protein S12 methylthiotransferase accessory factor | |||||
GCTCTCTGTTGGTACTGTGTCTGCAAGCTTTTCAATGTCCGTGCAGCGCCACCACCGGCGGAGGCTTTCGAAAGTGGGCCTGCTAAGCCCGAATAGTCACCACCTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4114202‑4114361‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcaagccagcgCCACAGGTATTGCACCGCTCTTGAGATCTGTGCCGAACCTGTGGACGCTGGCTTGCCGCGTTGCCATCCAGGCGCATAGCGTTCTCTTCCTATCCACTTCAGGTGGTGACTATTCGGGCTTAGCAGGCCCACTTTCGAAAGCCTCCGCC < NC_002947/4114406‑4114258 cCTCTCTGTTGGTACTGTGTCTGCAAGCTTTTCAATGTCCGTGTAGCGCCACCACCGGCGGAGGCTTTCGAAAGTGGGCCTGCTAAGCCCGAATAGTCACCACCTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGG < 1:1274940/149‑1 CTCTCTGTTGGTACTGTGTCTGCAAGCTTTTCAATGTCCGTGCAGCGCCACCACCGGCGGAGGCTTTCGAAAGTGGGCCTGCTAAGCCCGAATAGTCACCACCTGAAGTGGTTAGTTATAGAACGCTATGCGCCTGGATGGCAACGCGGC > 2:2019037/1‑150 TCTGTTGGTACTGTGTCTGCAAGCTTTTCAATGTCCGTGCAGCGCCACCACCGGCGGAGGCTTTCGAAAGTGGGCCTGCTAAGCCCGAATAGTCACCACCTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAG > 1:1617785/1‑150 TTGGTACTGTGTCTGCAAGCTTTTCAATGTCCGTGCAGCGCCACCACCGGCGGAGGCTTTCGAAAGTGGGCCTGCTAAGCCCGAATAGTCACCACCTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAG > 1:2192795/1‑150 GGTACTGTGTCTGCAAGCTTTTCAATGTCCGTGCAGCGCCACCACCGGCGGAGGCTTTCGAAAGTGGGCCTGCTAAGCCCGAATAGTCACCACCTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCG > 1:1089754/1‑150 TTCAATGTCCGTGCAGCGCCACCACCGGCGGAGGCTTTCGAAAGTGGGCCTGCTAAGCCCGAATAGTCACCACCTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGCCACAGGTATTGCACCGCgc > 1:585628/1‑148 CAATGTCCGTGCAGCGCCACCACCGGCGGAGGCTTTCGAAAGTGGGCCTGCTAAGCCCGAATAGTCACCACCTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGCCACAGGTATTGCACCGCTCTT > 1:1851394/1‑150 AATGTCCGTGCAGCGCCACCACCGGCGGAGGCTTTCGAAAGTGGGCCTGCTAAGCCCGAATAGTCACCACCTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAA < 2:946200/120‑1 AATGTCCGTGCAGCGCCACCACCGGCGGAGGCTTTCGAAAGTGGGCCTGCTAAGCCCGAATAGTCACCACCTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAA > 1:946200/1‑120 GTGCAGCGCCACCACCGGCGGAGGCTTTCGAAAGTGGGCCTGCTAAGCCCGAATAGTCACCACCTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGCCACAGGTATTGCACCGCTCTTGAGATCTG > 1:1169795/1‑150 GAGGCTTTCGAAAGTGGGCCTGCTAAGCCCGAATAGTCACCACCTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGCCACAGGTATTGCACCGCTCTTGAGCTCTGTGCCGAACCTGTGGACGCTG < 2:585628/150‑1 AGGCTTTCGAAAGTGGGCCTGCTAAGCCCGAATAGTCACCACCTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGCCACAGGTATTGCACCGCTCTTGAGATCTGTGCCGAACCTGTGGACGCTGG < 2:1851394/150‑1 AGTGGGCCTGCTAAGCCCGAATAGTCACCACCTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGCCACAGGTATTGCACCGCTCTTGAGATCTGTGCCGAACCTGTGGACGCTGGCTTGCCGCGTT < 2:1169795/150‑1 TGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGCCACAGGTATTGCACCGCTCTTGAGATCTGTGCCGAACCTGTGGACGCT < 1:1073363/105‑1 TGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGCCACAGGTATTGCACCGCTCTTGAGATCTGTGCCGAACCTGTGGACGCT > 2:1073363/1‑105 TATGCGCCTGGATGGCAACGCGGCAAGCCAGCGCCACAGGTATTGCACCGCTCTTGAGATCTGTGCCGAA < 1:587003/70‑1 TATGCGCCTGGATGGCAACGCGGCAAGCCAGCGCCACAGGTATTGCACCGCTCTTGAGATCTGTGCCGAA > 2:587003/1‑70 CGGCAAGCCAGCGCCACAGGTATTGCACCGCTCTTGAGATCTGTGCCGAACCTGTGGACGCTGGCTTGCCGCGTTGCCATCCAGGCGCATAGCGTTCTCTTCCTATCCACTTCAGGTGGTGACTATTCGGGCTTAGCAGGCCCACTTTCG > 2:116064/1‑150 GGCAAGCCAGCGCCACAGGTATTGCACCGCTCTTGAGATCTGTGCCGAACCTGTGGACGCTGGCTTGCCGCGTTGCCATCCAGGCGCATAGCGTTCTCTTCCTATCCACTTCAG < 2:1724252/114‑1 GGCAAGCCAGCGCCACAGGTATTGCACCGCTCTTGAGATCTGTGCCGAACCTGTGGACGCTGGCTTGCCGCGTTGCCATCCAGGCGCATAGCGTTCTCTTCCTATCCACTTCAG > 1:1724252/1‑114 aAAGCCAGCGCCACAGGTATTGCTCCGCTCTTGAGATCTTTGCCGAACCTGTGGACGCTGGCTTGCCGCGTTGCCATCCAGGCGCATAGCGTTCTCTTCCTATCCACTTCAGGTGGTGACTATTCGGGCTTAGCAGGCCCACTTTCGAAA < 1:1450674/149‑1 CAAGCCAGCGCCACAGGTATTGCACCGCTCTTGAGATCTGTGCCGAACCTGTGGACGCTGGCTTGCCGCGTTGCCATCCAGGCGCATAGCGTTCTCTTCCTATCCACTTCAGGTGGTGACTATTCGGGCTTAGCAGGCCCACTTTCGAAA < 2:2430395/150‑1 AAGCCAGCGCCACAGGTATTGCACCGCTCTTGAGATCTGTGCCGAACCTGTGGACGCTGGCTTGCCGCGTTGCCATCCAGGCGCATAGCGTTCTCTTCCTATCCACTTCAGGTGGTGACTATTCGGGCTTAGCAGGCCCACTTTCGAAAG > 1:871525/1‑150 CCAGCGCCACAGGTATTGCACCGCTCTTGAGATCTGTGCCGAACCTGTGGACGCTGGCTTGCCGCGTTGCCATCCAGGCGCATAGCGTTCTCTTCCTATCCACTTCAGGTGGTGACTATTCGGGCTTAGCAGGCCCACTTTCG < 1:735476/143‑1 CCAGCGCCACAGGTATTGCACCGCTCTTGAGATCTGTGCCGAACCTGTGGACGCTGGCTTGCCGCGTTGCCATCCAGGCGCATAGCGTTCTCTTCCTATCCACTTCAGGTGGTGACTATTCGGGCTTAGCAGGCCCACTTTCG > 2:735476/1‑143 CAGCGCCACAGGTCTTGCACCGCACTTGAGATCTGTGCCGAACCTGTGGACGCTGGCTTGCCGCGTTGCCATCCAGGCGCATAGCGTTCTCTTCCTATCCACTTCAGGCGGTGACTATTCGGGCTTAGCAGGCCCACTTTCGAAAGCCTC > 2:330644/1‑150 CAGCGCCACAGGTATTGCACCGCTCTTGAGATCTGTGCCGAACCTGTGGACGCTGGCTTGCCGCGTTGCCATCCAGGCGCATAGCGTTCTCTTCCTATCCACTTCAGGTGGT > 2:2047314/1‑112 CAGCGCCACAGGTATTGCACCGCTCTTGAGATCTGTGCCGAACCTGTGGACGCTGGCTTGCCGCGTTGCCATCCAGGCGCATAGCGTTCTCTTCCTATCCACTTCAGGTGGT < 1:2047314/112‑1 CGCCACAGGTATTGCACCGCTCTTGAGATCTGTGCCGAACCTGTGGACGCTGGCTTGCCGCGTTGCCATCCAGGCGCATAGCGTTCTCTTCCTATCCACTTCAGGTGGTGACTATTCGGGCTTAGCAGGCCCACTTTCGAAAGCCTCCGC < 1:2190566/150‑1 GCCACAGGTATTGCACCGCTCTTGAGATCTGTGCCGAACCTGTGGACGCTGGCTTGCCGCGTTGCCATCCAGGCGCATAGCGTTCTCTTCCTATCCACTTCAGGTGGTGACTATTCGGGCTTAGCAGGCCCACTTTCGAAAGCCTCCGCC > 2:1089754/1‑150 GCTCTCTGTTGGTACTGTGTCTGCAAGCTTTTCAATGTCCGTGCAGCGCCACCACCGGCGGAGGCTTTCGAAAGTGGGCCTGCTAAGCCCGAATAGTCACCACCTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4114202‑4114361‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcaagccagcgCCACAGGTATTGCACCGCTCTTGAGATCTGTGCCGAACCTGTGGACGCTGGCTTGCCGCGTTGCCATCCAGGCGCATAGCGTTCTCTTCCTATCCACTTCAGGTGGTGACTATTCGGGCTTAGCAGGCCCACTTTCGAAAGCCTCCGCC < NC_002947/4114406‑4114258 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |