New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4189306 =	98 (1.050)	9 (0.100)	9/234	NT	9.1%	coding (525/819 nt)	PP_5611	transcriptional regulator
	?	NC_002947	4189330 =	89 (1.020)					coding (549/819 nt)	PP_5611	transcriptional regulator

CTGCATCTCACCGTCAACCATGCCATAGTCGTCCTCGATCAATCGTCGTTGTGCTGCGGTAAGCTCAGGGTGAGGGATAAAGACCACGCTAACCATCCGCTCCCAAGCTTTGTCCAAACCGCTCCGATCAAGGTCGGGCCGCAG‑ATGCT‑CGGCCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4189462‑4189306 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcccgaCCTTGATCGGAGCGGTTTGGACAAAGCTTGGGAGCGGATGGTTAGCGTGGTCTTTATCCCTCACCCTGAGCTTACCGCAGCACAACGACGATTGATCGAGGACGACTATGGCATGGTTGACGGTGAGATGCAGTTGAAGTGTCGTC  >  NC_002947/4189330‑4189475                                                                                                                                                                                                                                                                                                                   CTGCATCTCACCGTCAACCATGCCATAGTCGTCCTCGATCAATCGTCGTTGTGCTGCGGTAAGCTCAGGGTGAGGGATAAAGACCACGCTAACCATCCGCTCCCAAGCTTTGTCCAAACCGCTCCGATCAAGGTCGGGCCGCAG‑ATGCT‑C                                                                                                                                                           <  1:1404198/150‑1 CTGCATCTCACCGTCAACCATGCCATAGTCGTCCTCGATCAATCGTCGTTGTGCTGCGGTAAGCTCAGGGTGAGGGATAAAGACCACGCTAACCATCCGCTCCCAAGCTTTGTCCAAACCGCTCCGATCAAGGTCGGGCCGCAG‑ATGCT‑C                                                                                                                                                           >  2:2372937/1‑150   GCATCTCACCGTCAACCATGCCATAGTCGTCCTCGATCAATCGTCGTTGTGCTGCGGTAAGCTCAGGGTGAGGGATAAAGACCACGCTAACCATCCGCTCCCAAGCTTTGTCCAAACCGCTCCGATCAAGGTCGGGCCGCAG‑ATGCT‑CGG                                                                                                                                                         <  2:2245532/150‑1        TCACCGTCAACCATGCCATAGCCGTCCTCGATCAATCGTCGTCGTGCTGCGGTAAGCTCAGGGTGAGGGATAAAGACCACGCTAACCATCCGCTCCCAAGCTTTGTCCAAACCGCTCCGATCGAGGGCGGGCCCCAG‑ATGCT‑CGCCCCGA                                                                                                                                                    >  2:444073/1‑150                                                                           GGATAAAGACCACGCTAACCATCCGCTCCCAAGCTTTGTCCAAACCGCTCCGATCAAGGTCGGGCCG‑AGCAT‑CTGCGGCCCGACCTTGATC                                                                                                                                            >  2:2169536/1‑91                                                                           GGATAAAGACCACGCTAACCATCCGCTCCCAAGCTTTGTCCAAACCGCTCCGATCAAGGTCGGGCCG‑AGCAT‑CTGCGGCCCGACCTTGATC                                                                                                                                            <  1:2169536/91‑1                                                                                                                                     GTCGGGCCGCAG‑ATGCT‑CGGCCCGACCTTGATCGGAGCGGTTTGGACAAAGCTTGGGAGCGGATGGTTAGCGTGGTCTTTATCCCTCACCCT                                                                                 <  1:426385/92‑1                                                                                                                                     GTCGGGCCGCAG‑ATGCT‑CGGCCCGACCTTGATCGGAGCGGTTTGGACAAAGCTTGGGAGCGGATGGTTAGCGTGGTCTTTATCCCTCACCCT                                                                                 >  2:426385/1‑92                                                                                                                                      TCGGGCCGCAG‑ATGCT‑CGGCCCGACCTTGATCGGAGCGGTTTGGACAAAGCTTGGGAGCGGAT                                                                                                             <  1:464650/63‑1                                                                                                                                      TCGGGCCGCAG‑ATGCT‑CGGCCCGACCTTGATCGGAGCGGTTTGGACAAAGCTTGGGAGCGGAT                                                                                                             >  2:464650/1‑63                                                                                                                                        GGGCCGCAG‑ATGCT‑CGGCCCGACCTTGATCGGAGCGGTTTGGACAAAGCTTGGGAGCGGATGGTTAGCGTGGTCTTTATCCCTCACCCTGAGCTTACCGCAGCACAACGACGATTGATCGAGGACGACTATGGCATGGTTGACGGTGAGA                    >  2:897368/1‑150                                                                                                                                               AG‑ATGCT‑CGGCCCGACCTTGATCGGAGCGGTTTGGACAAAGCTTGGGAGCGGATGGTTAGCGTGGTCTTTATCCCTCACCCCGAGCTTACCGCAGCACAACGACGATTGATCGAGGACGACTATGGCAT                                  <  1:2409053/129‑1                                                                                                                                               AG‑ATGCT‑CGGCCCGACCTTGATCGGAGCGGTTTGGACAAAGCTTGGGAGCGGATGGTTAGCGTGGTCTTTATCCCTCACCCCGAGCTTACCGCAGCACAACGACGATTGATCGAGGACGACTATGGCAT                                  >  2:2409053/1‑129                                                                                                                                                          GCCCGACCTTGATCGGAGCGGTTTGGACAAAGCTTGGGAGCGGATGGTTAGCGTGGTCTTTATCCCTCACCCTGAGCTTACCGCAGCACAACGACGATTGATCGAGGACGACTATGGCATGGTTGACGGTGAGATGCAGTTGAAGTGTCG    >  1:1231147/1‑150                                                                                                                                                          GCCCGACCTTGATCGGAGCGGTTTGGACAAAGCTTGGGAGCGGATGGTTAGCGTGGTCTTTATCCCTCACCCTGAGCTTACCGCAGCACAACGACGATTGATCGAGGACGACTATGGCATGGTTGACGGTGAGA                    >  2:2125958/1‑134                                                                                                                                                          GCCCGACCTTGATCGGAGCGGTTTGGACAAAGCTTGGGAGCGGATGGTTAGCGTGGTCTTTATCCCTCACCCTGAGCTTACCGCAGCACAACGACGATTGATCGAGGACGACTATGGCATGGTTGACGGTGAGA                    <  1:2125958/134‑1                                                                                                                                                            CCGACCTTGATCGGAGCGGTTTGGACAAAGCTTGGGAGCGGATGGTTAGCGTGGTCTTTATCCCTCACCCTGAGCTTACCGCAGCACAACGACGATTGATCGAGGACGACTATGGCATGGTTGACGGTGAGATGCAGTTGAAGTGTCGTC  >  1:616275/1‑150                                                                                                                                                            CCGACCTTGATCGGAGCGGTTTGGACAAAGCTTGGGAGCGGATGGTTAGCGTGGTCTTTATCCCTCACCCTGAGCTTACCGCAGCACAACGACGATTGATCGAGGACGACTATGGCATGGTTGACGGTGAGATGCAGTTGAAGTGTCGTC  <  2:2211663/150‑1                                                                                                                                                            CCGACCTTGATCGGAGCGGTTTGGACAAAGCTTGGGAGCGGATGGTTAGCGTGGTCTTTATCCCTCACCCTGAGCTTACCGCAGCACAACGACGATTGATCGAGGACGACTATGGCATGGTTGACGGTGAGATGCAGTTGAAGTGTCGTC  <  2:730959/150‑1                                                                                                                                                                                                                                                                                                                   CTGCATCTCACCGTCAACCATGCCATAGTCGTCCTCGATCAATCGTCGTTGTGCTGCGGTAAGCTCAGGGTGAGGGATAAAGACCACGCTAACCATCCGCTCCCAAGCTTTGTCCAAACCGCTCCGATCAAGGTCGGGCCGCAG‑ATGCT‑CGGCCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4189462‑4189306 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcccgaCCTTGATCGGAGCGGTTTGGACAAAGCTTGGGAGCGGATGGTTAGCGTGGTCTTTATCCCTCACCCTGAGCTTACCGCAGCACAACGACGATTGATCGAGGACGACTATGGCATGGTTGACGGTGAGATGCAGTTGAAGTGTCGTC  >  NC_002947/4189330‑4189475

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.