| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4429337 | 114 (1.220) | 7 (0.080) | 7/232 | NT | 6.1% | coding (331/711 nt) | PP_3923 | phosphoglycerate mutase |
| ? | NC_002947 | = 4429341 | 110 (1.270) | coding (335/711 nt) | PP_3923 | phosphoglycerate mutase | |||||
CGCACGGCTGGCGCTGCAGGCGCTGCACGCCAACGGCTGCCCGGTGCCGGCGGTTGAGACCGACGCCGCATTCAATGAGTTCGATGCCGACGGGGTGATCCGCGCCCTGTTGCCCGACCTGCTGCCGGAAGAGCCCGATGCCCTGCATGTGCTGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4429180‑4429337‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctgcgcaGCATTGCGCAGCACATGCAGGGCATCGGGCTCTTCCGGCAGCAGGTCGGGCAACAGGGCGCGGATCACCCCGTCGGCATCGAACTCATTGAATGCGGCGTCGGTCTCAACCGCCGGCACCGGGCAGCCGTTGGCGTGCAGCGCCTGC < NC_002947/4429341‑4429195 CGCACGGCTGGCGCTGCAGGCGCTGCACGCCAACGGCTGCCCGGTGCCGGCGGTTGAGACCGACGCCGCATTCAATGAGTTCGATGCCGACGGGGTGATCCGCGCCCTGTTGCCCGACCTGCTGCCGGAAGAGCCCGATGCCCTGCATGT > 1:1436176/1‑150CGCACGGCTGGCGCTGCAGGCGCTGCACGCCAACGGCTGCCCGGTGCCGGCGGTTGAGACCGACGCCGCATTCAATGAGTTCGATGCCGACGGGGTGATCCGCGCCCTGTTACTCGACCTGCTGCCGGAAGAGCCCGATGCCCTGCATGT > 1:1946684/1‑150 CACGGCTGGCGCTGCAGGCGCTGCACGCCAACGGCTGCCCGGTGCCGGCGGTTGAGACCGACGCCGCATTCAATGAGTTCGATGCCGACGGGGTGATCCGCGCCCTGTTGCCCGACCTGCTGCCGGAAGAGCCCGATGCCCTGCATGTGC > 1:353908/1‑150 GGCTGGCGCTGCAGGCGCTGCACGCCAACGGCTGCCCGGTGCCGGCGGTTGAGACCGACGCCGCATTCAATGAGTTCGATGCCGACGGGGTGATCCGCGCCCTGTTGCCCGACCTGCTGCCGGAAGAGCCCGATTCCCTGCATGTGCTGC < 2:241811/150‑1 GGCTGGCGCTGCAGGCGCTGCACGCCAACGGCTGCCCGGTGCCGGCGGTTGAGACCGACGCCGCATTCAATGAGTTCGATGCCGACGGGGTGATCCGCGCCCTGTTGCCCGACCTGCTGCCGGAAGAGCCCGATGCCCTGCATGTGCTGC > 1:1476578/1‑150 GGCTGGCGCTGCAGGCGCTGCACGCCAACGGCTGCCCGGTGCCGGCGGTTGAGACCGACGCCGCATTCAATGAGTTCGATGCCGACGGGGTGATCCGCGCCCTGTTGCCCGACCTGCTGCCGGAAGAGCCCGATGCCCTGCATGTGCTGC > 2:1982432/1‑150 GGCTGGCGCTGCAGGCGCTGCACGCCAACGGCTGCCCGGTGCCGGCGGTTGAGACCGACGCCGCATTCAATGAGTTCGATGCCGACGGGGTGATCCGCGCCCTGTTGCCCGACCTGCTGCCGGAAGAGCCCGATGCCCTGCATGTGCTGC < 1:610119/150‑1 CTGCACGCCAACGGCTGCCCGGTGCCGGCGGTTGAGACCGACGCCGCATTCAATGAGTTCGATGCCGACGGGGTGATCCGCGCCCTGTTGCCCGACCTGCTGCCGGAAGAGCCCGATGCCCTGCATGTGCTGCGCAGCATTGCGCAGCAC < 2:428189/150‑1 TGCCCGGTGCCGGCGGTTGAGATCGACGCCGCATTCAATGAGTTCGATGCCGACGGGGTGATCCGCGCCCTGTTGCCCGACCTGCTGCCGGAAGAGCCCGATGCCCTGCATGTGCgcagca > 2:1651456/1‑115 TGCCCGGTGCCGGCGGTTGAGATCGACGCCGCATTCAATGAGTTCGATGCCGACGGGGTGATCCGCGCCCTGTTGCCCGACCTGCTGCCGGAAGAGCCCGATGCCCTGCATGTGCgcagca < 1:1651456/121‑7 TTCAATGAGTTCGATGCCGACGGGGTGATCCGCGCCCTGTTGCCCGACCTGCTGCCGGAAGAG‑CCGATGCCCTGCATGTGCTGCGCAGCATTGCGCAG < 1:603661/98‑1 TTCAATGAGTTCGATGCCGACGGGGTGATCCGCGCCCTGTTGCCCGACCTGCTGCCGGAAGAG‑CCGATGCCCTGCATGTGCTGCGCAGCATTGCGCAG > 2:603661/1‑98 TGAGTTCGATGCCGACGGGGTGATCCGCGCCCTGTTGCCCGACCTGCTGCCGGAAGAGCCCGATGCCCTGCATGTGCT < 1:2322405/78‑1 TGAGTTCGATGCCGACGGGGTGATCCGCGCCCTGTTGCCCGACCTGCTGCCGGAAGAGCCCGATGCCCTGCATGTGCT > 2:2322405/1‑78 GGAAGAGCCCGATGCCCTGCATGTGCTGCGCAGCATTGCGCA < 2:1935048/42‑1 GGAAGAGCCCGATGCCCTGCATGTGCTGCGCAGCATTGCGCA > 1:1935048/1‑42 CCTGCATGTGCTGCGCAATGCTGCGCAGCACATGCAGGGCATCGGGCTCTTCCGGCAGCAGGTCGGG > 2:2124102/1‑67 CCTGCATGTGCTCCGCAATGCTGCGCAGCACATGCAGGGCATCGGGCTCTTCCGGCAGCAGGTCGGG < 1:2124102/67‑1 CTGCGCAGCATTGCGCAGCACATGCAGGGCATCGGGCTCTTCCGGCAGCAGGTCGGGCAACAGGGCGCGGATCACCCCGTCGGCATCGAACTCATTGAATGCGGCGTCGGTCTCAACCGCCGGCACCGGGCAGCCGTTGGCGTGCAGCGC > 2:756707/1‑150 CTGCGCAGCATTGCGCAGCACATGCAGGGCATCGGGCTCTTCCGGCAGCAGGTCGGGCAACAGGGCGCGGATCACCCCGTCGGCATCGAACTCATTGAATGCGGCGTCGGTCTCAACCGCC > 1:1977965/1‑121 CTGCGCAGCATTGCGCAGCACATGCAGGGCATCGGGCTCTTCCGGCAGCAGGTCGGGCAACAGGGCGCGGATCACCCCGTCGGCATCGAACTCATTGAATGCGGCGTCGGTCTCAACCGCC < 2:1977965/121‑1 GCAGCATTGCGCAGCACATGCAGGGCATCGGGCTCTTCCGGCAGCAGGTCGGGCAACAGGGCGCGGATCACCCCGTCGGCATCGAACTCATTGAATGCGGCGTCGGTCTCAACCGCCGGCACCGGGCAGCCGTTGGCGTGCAGCGCCTag > 1:2331295/1‑148 CGCACGGCTGGCGCTGCAGGCGCTGCACGCCAACGGCTGCCCGGTGCCGGCGGTTGAGACCGACGCCGCATTCAATGAGTTCGATGCCGACGGGGTGATCCGCGCCCTGTTGCCCGACCTGCTGCCGGAAGAGCCCGATGCCCTGCATGTGCTGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4429180‑4429337‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctgcgcaGCATTGCGCAGCACATGCAGGGCATCGGGCTCTTCCGGCAGCAGGTCGGGCAACAGGGCGCGGATCACCCCGTCGGCATCGAACTCATTGAATGCGGCGTCGGTCTCAACCGCCGGCACCGGGCAGCCGTTGGCGTGCAGCGCCTGC < NC_002947/4429341‑4429195 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |