| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4458807 = | 78 (0.840) | 6 (0.070) | 6/240 | NT | 7.7% | intergenic (+55/‑213) | pcaJ/trkH‑I | 3‑oxoadipate CoA‑transferase subunit A/potassium transporter |
| ? | NC_002947 | 4458840 = | 69 (0.770) | intergenic (+88/‑180) | pcaJ/trkH‑I | 3‑oxoadipate CoA‑transferase subunit A/potassium transporter | |||||
AAAAAGGCGTAAAGTCGTGGCCGGCAATTTTTTACGCCGCTATCTGGCTCCCGCTCGATAGCTCATTGGGTTGACCTCTCCGAGAGTTCCATCGGCTTCGAAGCGGCTGTAAAGGTAGTCTCAAGCACCGCGTGCTCCCTGCTCGCGGCGCTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4458960‑4458807‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcttgAGACTACCTTTACAGCCGCTTCGAAGCCGATGGAACTCTCGGAGAGGTCAACCCAATGAGCTATCGAGCGGGAGCCAGATAGCGGCGTAAAAAATTGCCGGCCACGACTTTACGCCTTTTTTACTCGACATTACCGTAAAGCAGGCAA > NC_002947/4458840‑4458987 AAAAAGGCGTAAAGTCGTGGCCGGCAATTTTTTACGCCGCTATCTGGGTCCCGCTCGATAGCTCATTGGATTGACCTCTCCGAGAGTTCCATCGGCTTCGAAGCGGCTGTAAAGGTAGTCTCAAGCACCGCGTGCTCCCTGCTCGCGGCG > 2:1230832/1‑150AAAAAGGCGTAAAGTCGTGGCCGGCAATTTTTTACGCCGCTATCTGGCTCCCGCTCGATAGCTCATTGGGTTGACCTCTCCGAGAGTTCCATCGGCTTCGAAGCGGCTGTAAAGGTAGTCTCAAGCACCGCGTGCTCCCTGCTCGCGGCG > 2:899629/1‑150 TCAAGCACCGCGTGCTCCCTGCTCGCGGCGCTTGAGACTACCTTTACAGCCGCTTCGAAGCCGATGGAACTCTCGGAGAGGTCAACCCAATGAGCTATCGAGCGGGA > 1:73640/1‑107 TCAAGCACCGCGTGCTCCCTGCTCGCGGCGCTTGAGACTACCTTTACAGCCGCTTCGAAGCCGATGGAACTCTCGGAGAGGTCAACCCAATGAGCTATCGAGCGGGA < 2:73640/107‑1 ACCGCGTGCTCCCTGCTCGCGGTGCTTGAGACTACCTTTACAGCCGCTTCGAAGCCGATGGAACTCTCGGAGAGGTCAACCCAATGAGCTATCGAGCGGGAGCCAGATAGCGG < 1:936676/113‑1 ACCGCGTGCTCCCTGCTCGCGGTGCTTGAGACTACCTTTACAGCCGCTTCGAAGCCGATGGAACTCTCGGAGAGGTCAACCCAATGAGCTATCGAGCGGGAGCCAGATAGCGG > 2:936676/1‑113 GCGTGCTCCCTGCTCGCGGCGCTTGAGACTACCTTTACAGCCGCTTCGAA > 1:913519/1‑50 GCGTGCTCCCTGCTCGCGGCGCTTGAGACTACCTTTACAGCCGCTTCGAA < 2:913519/50‑1 CTTGAGACTACCTTTACAGCCGCTTCGAAGCCGATGGAACTCTCGGAGAGGTCAACCCAATGAGCTATCGAGCGGGAGCCAGATAGCGGCGTAAAAAATTGCCGGCCACGACTTTACGCCTTTTTTACTCGACATTACCGTAAAGCAGGC < 1:67026/150‑1 TGAGACTACCTTTACAGCCGCTTCGAAGCCGATGGAACTCTCGGAGAGGTCAACCCAATGAGCTATCGAGCGGGAGCCAGATAGCGGCGTAAAAAATTGCCGGCCACGACTTTACGCCTTTTTTACTCGACATTACCGTAAAGCAGGCAA < 1:1133639/150‑1 AAAAAGGCGTAAAGTCGTGGCCGGCAATTTTTTACGCCGCTATCTGGCTCCCGCTCGATAGCTCATTGGGTTGACCTCTCCGAGAGTTCCATCGGCTTCGAAGCGGCTGTAAAGGTAGTCTCAAGCACCGCGTGCTCCCTGCTCGCGGCGCTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4458960‑4458807‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcttgAGACTACCTTTACAGCCGCTTCGAAGCCGATGGAACTCTCGGAGAGGTCAACCCAATGAGCTATCGAGCGGGAGCCAGATAGCGGCGTAAAAAATTGCCGGCCACGACTTTACGCCTTTTTTACTCGACATTACCGTAAAGCAGGCAA > NC_002947/4458840‑4458987 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |