| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4599330 | 98 (1.050) | 11 (0.120) | 13/236 | NT | 10.9% | coding (525/3627 nt) | PP_4071 | membrane protein |
| ? | NC_002947 | = 4599354 | 87 (0.990) | coding (501/3627 nt) | PP_4071 | membrane protein | |||||
CTGCCACAGTTTGGCTTGGGTTCCAGACGGTACCGAAGACTCAACGTCAGTGGAGTCACTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4599180‑4599330‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacggggCCGGCCAGCGCAGGCGCTCGCCTACCCCGTGGGGTGGTGGATCAGCAATGATGCGGTGATCATCGACCCGCCCGGTGCCTTTATCAGCCAGAACGGCCCCGCAGATTCGCTGGGCAGTGACTCCACTGACGTTGAGTCTTCGGTAC < NC_002947/4599354‑4599209 CTGCCACAGTTTGGCTTGGGTTCCAGACGGTACCGAAGACTCAACGTCAGTGGAGTCACTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGG < 1:1175063/150‑1CTGCCACAGTTTGGCTTGGGTTCCAGACGGTACCGAAGACTCAACGTCAGTGGAGTCACTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGG < 2:375349/150‑1 TGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGCCGGCCAGCGCAGGCGCTCGCCTACCCCGTGG > 2:650812/1‑94 TGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGCCGGCCAGCGCAGGCGCTCGCCTACCCCGTGG < 1:650812/94‑1 GCATCATTGCTGATCCACCACCCCACGGGGCCGGCCAGCGCAGGCGCTCGCCTACCCCGTGGGGTGGTGGATCAGCAATGATGCGGTGATCATCGACCCGCCCGGTGCCTTTATCAGCCA > 1:306997/1‑120 GCATCATTGCTGATCCACCACCCCACGGGGCCGGCCAGCGCAGGCGCTCGCCTACCCCGTGGGGTGGTGGATCAGCAATGATGCGGTGATCATCGACCCGCCCGGTGCCTTTATCAGCCA < 2:306997/120‑1 TTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGGGGTGGTGGATCAGCAATGATGCGGTGATCATCGACCCGCCCGGTGCCTTTATCAGCCAGAACGGCCCCGCAGATTCGCTGGGCAGTGACTCCAC > 2:2219249/1‑150 TGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGGGGTGGTGGATCAGCAATGATGCGGTGATCATCGACCCGCCCGGTGCCTTTATCAGCCAGAACGGCCCCGCAGATTCGCTGGGCAGTGACTCCACT > 1:774961/1‑150 TGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGGGGTGGTGGATCAGCAATGATGCGGTGATCATCGACCCGCCCGGTGCCTTTATCAGCCAGAACGGCCCCGCAGATTCGCTGGGCAGTGACTCCACTGAC < 1:2219249/150‑1 ACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGGGGTGGTGGATCAGCAATGATGCGGTGATCATCGACCCGCCCGGTGCCTTTATCAGCCAGAACGGCCCCGCAGATTCGCTGGG < 1:2449355/128‑1 ACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGGGGTGGTGGATCAGCAATGATGCGGTGATCATCGACCCGCCCGGTGCCTTTATCAGCCAGAACGGCCCCGCAGATTCGCTGGG > 2:2449355/1‑128 ACCACCCCACGGGGTAGGCGAGCGCAGGCGCTCGCCTACCCCGTGGGGTGGTGGATCAGCAATGATGCGGTGATCAT < 1:1293019/77‑1 ACCACCCCACGGGGTAGGCGAGCGCAGGCGCTCGCCTACCCCGTGGGGTGGTGGATCAGCAATGATGCGGTGATCAT > 2:1293019/1‑77 CCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGGGGTGGTGGATCAGCAATGATGCGGTGATCATCGACCCGCCCGGTGCCTTTATCAGCCAGAACGGCCCCGCAGATTCGCTGGGCAGTGACTCCACTGACGTTGAGTCTTC > 1:1435954/1‑150 CCACGGGGTAGGCGAGCGCCTGCGCTGGCCTACCCCGTGGGGTGGTGGATCAGCAATGATGCGGTGATCATCGACCCGCCCGGTGCCTTTATCAGCCAGAACGGCCCCGCAGATTCGCT > 1:86921/1‑119 CCACGGGGTAGGCGAGCGCCTGCGCTGGCCTACCCCGTGGGGTGGTGGATCAGCAATGATGCGGTGATCATCGACCCGCCCGGTGCCTTTATCAGCCAGAACGGCCCCGCAGATTCGCT < 2:86921/119‑1 ACGGGGCCGGCCAGCGCAGGCGCTCGCCTACCCCGTGGGGTGGTGGATCAGCAATGATGCGGTGATCATCGACCCGCCCGGTGCCTTTATCAGCCAGAACGGCCCCGCAGATTCGCTGGGCAGTGACTCCACTGACGTTGAGTCTTCGGT > 1:486939/1‑150 CGGGGCCGGCCAGCGCAGGCGCTCGCCTACCCCGTGGGGTGGTGGATCAGCAATGATGCGGTGATCATCGACCCGCCCGGTGCCTTTATCAGCCAGAACGGCCCCGCAGATTCGCTGGGCAGTGACTCCACTGACGTTGAGTCTTCGGTA < 2:423024/150‑1 GGGGCCGGCCAGCGCAGGCGCTCGCCTACCCCGTGGGGTGGTGGATCAGCAATGATGCGGTGATCATCGACCCGCCCGGTGCCTTTATCAGCCAGAACGGCCCCGCAGATTCGCTGGGCAGTGACTCCACTGACGTTGAGTCTTCGGTAC < 1:2108557/150‑1 GCCGGCCAGCGCAGGCGCTCGCCTACCCCGTGGGGTGGTGGATCAGCAATGATGCGGTGATCATCGACCCGCCCGGTGC < 1:700666/79‑1 GCCGGCCAGCGCAGGCGCTCGCCTACCCCGTGGGGTGGTGGATCAGCAATGATGCGGTGATCATCGACCCGCCCGGTGC > 2:700666/1‑79 CTGCCACAGTTTGGCTTGGGTTCCAGACGGTACCGAAGACTCAACGTCAGTGGAGTCACTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4599180‑4599330‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacggggCCGGCCAGCGCAGGCGCTCGCCTACCCCGTGGGGTGGTGGATCAGCAATGATGCGGTGATCATCGACCCGCCCGGTGCCTTTATCAGCCAGAACGGCCCCGCAGATTCGCTGGGCAGTGACTCCACTGACGTTGAGTCTTCGGTAC < NC_002947/4599354‑4599209 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |