New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 485249821 (0.230)8 (0.130) 7/168 NT 27.5% intergenic (‑124/+173) recR/ybaB recombination protein RecR/nucleoid‑associated broad specificity regulator
?NC_002947 = 4852557 28 (0.450)intergenic (‑183/+114) recR/ybaB recombination protein RecR/nucleoid‑associated broad specificity regulator

GACCGACACCTGGCAAGATGCGCAGGCCGTCGATCAGTTGGCGGATGAGAGGGCTGAAGCTCATGGGAAAGGCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4852311‑4852498
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtctgcttttttgtgggagcggccttgtgtcgcgaaagggGCGCGAAGCGGCCCCGGGATTTCAGCTTCGCAGCACAGAGTGCCGGGGCTGCTTCGCAGCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCTTGCAGGCTTTGGGCGAGGTGATTTGACGCCACCGCCCCCGCT  <  NC_002947/4852557‑4852415
                                                                                                                                                                                                                                                                                                                                           
GACCGACACCTGGCAAGATGCGCAGGCCGTCGATCAGTTGGCGGATGAGAGGGCTGAAGCTCATGGGAAAGGCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGT                                                                                                                                                                                       >  1:1386972/1‑150
   CGACACCTGGCAAGATGCGCAGGCCGTCGATCAGTTGGCGGATGAGAGGGCTGAAGCTCATGGGAAAGGCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCCGTTGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTG                                                                                                                                                                                    >  1:1084637/1‑150
           GGCAAGATGCGCAGGCCGTCGATCAGTTGGCGGATGAGAGGGCTGAAGCTCATGGGAAAGGCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTG                                                                                                                                                                            >  2:219682/1‑150
              AAGATGCGCAGGCCGTCGATCAGTTGGCGGATGAGAGGGCTGAAGCTCATGGGAAAGGCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGG                                                                                                                                                                         >  1:2166115/1‑150
                     GCAGGCCGTCGATCAGTTGGCGGATGAGAGGGCTGAAGCTCATGGGAAAGGCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGC                                                                                                                                                                  <  1:1054126/150‑1
                       AGGCCGTCGATCAGTTGGCGGATGAGAGGGCTGAAGCTCATGGGAAAGGCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCT                                                                                                                                                                <  1:1781577/150‑1
                        GGCCGTCGATCAGTTGGCGGATGAGAGGGCTGAAGCTCATGGGAAAGGCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTT                                                                                                                                                               <  1:219682/150‑1
                                          GGATGAGAGGGCTGAAGCTCATGGGAAAGGCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGT                                                                                                                                                           >  1:1846253/1‑136
                                          GGATGAGAGGGCTGAAGCTCATGGGAAAGGCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGT                                                                                                                                                           <  2:1846253/136‑1
                                                                GGGAAAGGCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTT                                                                                                                                                               <  1:1495170/110‑1
                                                                GGGAAAGGCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTT                                                                                                                                                               >  2:1495170/1‑110
                                                                        CCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTTTTCTCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTCTTGTGGGAGCGGCCTGGGGTCGCGAAAGGGGCGCGAAGCGGCCCCGGGATTTCAGCTTCGCAGC                                                                                                               >  1:1863417/1‑150
                                                                                         AGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCGGTATTTCAGCTTCGCAGCACAGAGTGCCGGGGCTG                                                                                              >  2:1905672/1‑150
                                                                                                  ATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCGGGATTTCAGCTTCGCAGCACAGAGTGCCGGGGCTGCTTCGCAGC                                                                                     <  2:1863417/150‑1
                                                                                                       cgGCGGGGGGGGTGGCGTCACCGCACCTCGCCCATAGCTGGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCGGGATTTCAGCTTCGCAGCACAGAGTGCCGGGGCTGCTTCGCAGCCCTTT                                                                                <  2:1098449/148‑1
                                                                                                         GCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCGGTATTTCAGCTTCGCAGCACAGAGTGCCGGGGCTGCTTCGCAGCCCTTTCG                                                                              <  1:1905672/150‑1
                                                                                                         GCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCGGGATTTCAGCTTCGCAGCACAGAGTGCCGGGGCTGCTTCGCAGCCCTTTCG                                                                              <  1:586443/150‑1
                                                                                                                                       CAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCGGGATTTCAGCTTCGCAGCACAGAGTGCCGGGGCTGCTTCGCAGCCCTTTCGC                                                                             <  1:2162514/121‑1
                                                                                                                                       CAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCGGGATTTCAGCTTCGCAGCACAGAGTGCCGGGGCTGCTTCGCAGCCCTTTCGC                                                                             >  2:2162514/1‑121
                                                                                                                                                                        GGCNTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCGGGATTTCAGCTTCGCAGCACAGAGTGCCGGGGCTGCTTCGCAGCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCTTGCAGGCTTTGGGCGAGGTGATTTGACGC               >  2:1514800/1‑150
                                                                                                                                                                           CTTGTGTCGCGAAAGGGGCGCGAAGCGGCACCGGGATTTCAGCTTCGCAGCACAGAGTGCCGGGGCTGCTTCGCAGCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCTTGCAGGCTTTGGGCGAGGTGATTTGACGCCAC            >  2:1741444/1‑150
                                                                                                                                                                            TTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCGGGATTTCAGCTTCGCAGCACAGAGTGCCGGGGCTGCTTCGCA                                                                                       >  2:1481902/1‑74
                                                                                                                                                                            TTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCGGGATTTCAGCTTCGCAGCACAGAGTGCCGGGGCTGCTTCGCA                                                                                       <  1:1481902/74‑1
                                                                                                                                                                               TGTCGCGAAAGGGGCGCGAAGCGGCCCCGGGATTTCAGCTTCGCAGCACAGAGTGCCGGGGCTGC                                                                                             >  2:1481533/1‑65
                                                                                                                                                                               TGTCGCGAAAGGGGCGCGAAGCGGCCCCGGGATTTCAGCTTCGCAGCACAGAGTGCCGGGGCTGC                                                                                             <  1:1481533/65‑1
                                                                                                                                                                                 TCGCGAAAGGGGCGCGAAGCGGCCCCGGGATTTCAGCTTCGCAGCACAGAGTGCCGGGGCTGCTTCGCAGCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCTTGCAGGCTTTGGGCGAGGTGATT                     >  1:1341232/1‑135
                                                                                                                                                                                 TCGCGAAAGGGGCGCGAAGCGGCCCCGGGATTTCAGCTTCGCAGCACAGAGTGCCGGGGCTGCTTCGCAGCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCTTGCAGGCTTTGGGCGAGGTGATT                     <  2:1341232/135‑1
                                                                                                                                                                                   GCGAAAGGGGCGCGAAGCGGCCCCGGGATTTCAGCTTCGCAGCACAGAGTGCCGGGGCTGCTTCGCAGCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCTTGCAGGCTTTGGGCGAGGTGATTTGACGCCACCGCCCCCG    >  1:36495/1‑150
                                                                                                                                                                                     GAAAGGGGCGCGAAGCGGCCCCGGGATTTCAGCTTCGTAGCACAGAGTGCCGGGGCTGCTTCGCAGCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCTTGCAGGCTTTGGGCGAGGTGATTTGACGCCACCGCCCCCGCT  >  2:1386972/1‑150
                                                                                                                                                                                     GAAAGGGGCGCGAAGCGGCCCCGGGATTTCAGCTTCGCAGCACAGAGTGCCGGGGCTGCTTCGCAGCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCTTGCAGGCTTTGGGCGAGGTGATTTGACGCCACCGCCCCCGCT  >  1:1829734/1‑150
                                                                                                                                                                                                                                                                                                                                           
GACCGACACCTGGCAAGATGCGCAGGCCGTCGATCAGTTGGCGGATGAGAGGGCTGAAGCTCATGGGAAAGGCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4852311‑4852498
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtctgcttttttgtgggagcggccttgtgtcgcgaaagggGCGCGAAGCGGCCCCGGGATTTCAGCTTCGCAGCACAGAGTGCCGGGGCTGCTTCGCAGCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCTTGCAGGCTTTGGGCGAGGTGATTTGACGCCACCGCCCCCGCT  <  NC_002947/4852557‑4852415

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.