New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4886209	22 (0.240)	12 (0.170)	6/192	NT	42.9%	intergenic (+43/+80)	PP_4295/PP_4296	TetR family transcriptional regulator/hypothetical protein
	?	NC_002947	= 4886238	15 (0.210)					intergenic (+72/+51)	PP_4295/PP_4296	TetR family transcriptional regulator/hypothetical protein

ACCTATGCCGACTTCGACTGGCAGATTTCTGCGGTGACCGGTAAGGCCAAGCTGGCCGACAGTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4886035‑4886209 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccattcgcgggcaagcccgctcccacaggGACTCCACAACCTTCAGGCATGTGGTGATCCTGTGGGAGCGGGCTTGCCCGCGAATGGCCCTTCGAGATGGTTCAGGCTGCCTCAGGCTCACAACCTTTCAAGACCATACGAATGATGGTCTCGGCCGCCGCGTCATAATCACTGTC  <  NC_002947/4886238‑4886092                                                                                                                                                                                                                                                                                                                                    ACCTATGCCGACTTCGACTGGCAGATTTCTGCGGTGACCGGTAAGGCCAAGCTGGCCGACAGTGATTATGACGCGGCGTCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCAT                                                                                                                                                                              >  2:816763/1‑150 ACCTATGCCGACTTCGACTGGCAGATTTCTGCGGTGACCGGTAAGGCCAAGCTGGCCGACAGTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCAT                                                                                                                                                                              >  2:112771/1‑150  CCTATGCCGACTTCGACTGGCAGATTTCTGCGGTGACCGGTAAGGCCAAGCTGGCCGACAGTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATT                                                                                                                                                                             <  1:1502892/150‑1   CTATGCCGACTTCGACTGGCAGATTTCTGCGGTGACCGGTAAGGCCAAGCTGGCCGACAGTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTC                                                                                                                                                                            <  2:68181/150‑1       GCCGACTTCGACTGGCAGATTTCTGCGGTGACCGGTAAGGCCAAGCTGGCCGACAGTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGG                                                                                                                                                                        <  1:1444311/150‑1       GCCGACTTCGACTGGCAGATTTCTGCGGTGACCGGTAAGGCCAAGCTGGCCGACAGTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGG                                                                                                                                                                        >  1:2418389/1‑150       GCCGACTTCGACTGGCAGATTTCTGCGGTGACCGGTAAGGCCAAGCTGGCCGACAGTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGG                                                                                                                                                                        <  1:226379/150‑1                 ACTGGCAGATTTCTGCGGTGACCGGTAAGGCCAAGCTGGCCGACAGTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGC                                                                                                                                                              <  1:974540/150‑1                     GCAGATTTCTGCGGTGACCGGTAAGGCCAAGCTGGCCGACAGTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCC                                                                                                                                                          >  2:1733852/1‑150                     GCAGATTTCTGCGGTGACCGGTAAGGCCAAGCTGGCCGACAGTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGC                                                                                                                                                                  >  2:374650/1‑142                     GCAGATTTCTGCGGTGACCGGTAAGGCCAAGCTGGCCGACAGTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGC                                                                                                                                                                  <  1:374650/142‑1                      CAGATTTCTGCGGTGACCGGTAAGGCCAAGCTGGCCGACAGTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCTTGCCCGCgaatg                                                                                                                                                         <  1:2013145/150‑6                       AGATTTCTGCGGTGACCGGTAAGGCCAAGCTGGCCGACAGTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCTTGCCCGCgaatgg                                                                                                                                                        <  1:262301/150‑7                        GATTTCTGCGGTGACCGGTAAGGCCAAGCTGGCCGACAGTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACA                                                                                                                                                       <  1:2175414/150‑1                        GATTTCTGCGGTGACCGGTAAGGCCAAGCTGGCCGACAGTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACA                                                                                                                                                       <  2:1994761/150‑1                                           AAGGCCAAGCTGGCCGACAGTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGCACCGTCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGGACTCCACAACCTTCAG                                                                                                                                    <  1:426336/150‑1                                                      gtCCGACAGTGATTATGCCGCGGCGGCAGCGACCATCATTCGCATGGCCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACAACCTTCAGGCATGTGGTGA                                                                                                                         <  2:501959/148‑1                                                      GGCCGACAGTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACAACCTTCAGGCATGTGGTGA                                                                                                                         <  2:499542/150‑1                                                            CAGTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGCACTATCTCGAAGGCCCATTCGCGGGCAAGCCCGCTCCCACAGGGACTCCCCAACCTTCAGGCATGTGGTGATCCTGT                                                                                                                   <  1:2236659/150‑1                                                              GTGATTATGACGCGGCGGCCGAGATCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGTAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGGACTCCACAGCCTTCAGGCATGTGGTGATCCTGTGG                                                                                                                 <  2:1209091/150‑1                                                                    ATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGGACTCCACAACCTTCAGGCATGTGGTGATCCTGTGGGAGCGG                                                                                                           <  2:341897/150‑1                                                                                 CGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGCCCATTCGCGGGCAAGCCCGCTCCCACAGGGACTCCACAACCTTCAGGCATGTGGTGATCCTGT                                                                                                                   <  1:1397678/129‑1                                                                                 CGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGCCCATTCGCGGGCAAGCCCGCTCCCACAGGGACTCCACAACCTTCAGGCATGTGGTGATCCTGT                                                                                                                   >  2:1397678/1‑129                                                                                        ATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACA                                                                                                                                                       <  1:2131464/86‑1                                                                                        ATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACA                                                                                                                                                       >  2:2131464/1‑86                                                                                                TATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGCCCATTCGCGGGCAAGCCCGCTCCCACAGGGACTCCACAACCTTCAGGCATGTGGTGATCCTGTGGGAGC                                                                                                             >  2:852344/1‑120                                                                                                TATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGCCCATTCGCGGGCAAGCCCGCTCCCACAGGGACTCCACAACCTTCAGGCATGTGGTGATCCTGTGGGAGC                                                                                                             <  1:852344/120‑1                                                                                                           AAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGGACTCCACAACCTTCAGGCATGTGGTGATCCTGTG                                                                                                                  >  1:1877974/1‑104                                                                                                           AAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGGACTCCACAACCTTCAGGCATGTGGTGATCCTGTG                                                                                                                  <  2:1877974/104‑1                                                                                                                                      CCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAG                                                                                                                                                      >  1:22802/1‑41                                                                                                                                      CCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAG                                                                                                                                                      <  2:22802/41‑1                                                                                                                                                     ATTCGCGGGCAAGCCCGCTCCCACAGGGACTCCACAACCTTCAGGCATGTGGTGATCCTGTGGGAGCGGGCTTGCCCGCGAATGGCCCTTCGAGATGGTTCAGGCTGCCTCAGGCTCACAACCTTTCAAGACCATACGAATGATGGTCTC                          <  2:74583/150‑1                                                                                                                                                            GGCAAGCCCGCTCCCACAGGGACTCCACAACCTTCAGGCATGTGGTGATCCTGTGGGAGCGGGCTTGCCCGCGAATGGCCCTTCGAGATGGTTCAGGCTGCCTCAGGCTCACAACCTTTCAAGACCATACGAATGATGGTCTCGGCCGCC                   >  2:1930940/1‑150                                                                                                                                                             GCAAGCCCGCTCCCACAGGGACTCCACAACCTTCAGGCATGTGGTGATCCTGTGGGAGCGGGCTTGCCCGCGAATGGCCCTTCGAGATGGTTCAGGCTGCCTCAGGCTCACAACCTTTCAAGACCATACGAATGATGGTCTCGGCCGCCG                  >  2:1178112/1‑150                                                                                                                                                               AAGCCCGCTCCCACAGGGACTCCACAACCTTCAGGCATGTGGTGATCCTGTGGGAGCGGGCTTGCCCGCGAATGGCCCTTCGAGATGGTTCAGGCTGCCTCAGGCTCACAACCTTTCAAGACCATACGAATGATGGTCTCGGCC                      >  2:2401468/1‑144                                                                                                                                                               AAGCCCGCTCCCACAGGGACTCCACAACCTTCAGGCATGTGGTGATCCTGTGGGAGCGGGCTTGCCCGCGAATGGCCCTTCGAGATGGTTCAGGCTGCCTCAGGCTCACAACCTTTCAAGACCATACGAATGATGGTCTCGGCC                      <  1:2401468/144‑1                                                                                                                                                                AGCCCGCTCCCACAGGGACTCCACAACCTTCAGGCATGTGGTGATCCTGTGGGAGCGGGCTTGCCCGCGAATGGCCCTTCGAGATGGTTCAGGCTGCCTCAGGCTCACAACCTTGCAATACCATACGAATGATGGTCTCGGCCGCCGCGT               <  1:564975/150‑1                                                                                                                                                                 GCCCGCTCCCACAGGGACTCCACAACCTTCAGGCATGTGGTGATCCTGTGGGAGCGGGCTTGCCCGCGAATGGCCCTTCGAGATGGTTCAGGCTGCCTCAGGCTCACCACATCTCAAGACCATACGAATGATGGTCTCGGCCGCCGCGTC              >  2:564975/1‑150                                                                                                                                                                   CCGCTCCCACAGGGACTCCACAACCTTCAGGCATGTGGTGATCCTGTGGGAGCGGGCTTGCCCGCGAATGGCCCTTCGAGATGGTTCAGGCTGCCTCAGGCTCACAACCTTTCAAGACCATACGAATGATGGTCTCGGCCGCCGCGTCAT            >  2:2418389/1‑150                                                                                                                                                                       TCCCACAGGGACTCCACAACCTTCAGGCATGTGGTGATCCTGTGGGAGCGGGCTTGCCCGCGAATGGCCCTTCGAGATGGTTCAGGCTGCCTCAGGCTCACAACCTTTCAAGACCATACGAATGATGGTCTCGGCCGCCGCGTCATAATC        >  2:1680016/1‑150                                                                                                                                                                         CCACAGGGACTCCACAACCTTCAGGCATGTGGTGATCCTGTGGGAGCGGGCTTGCCCGCGAATGGCCCTTCGAGATGGTTCAGGCTGCCTCAGGCTCACAACCTTTCAAGACCATACGAATGATGGTCTCGGCCGCCGCGTCATAATCA       <  2:1835884/149‑1                                                                                                                                                                         CCACAGGGACTCCACAACCTTCAGGCATGTGGTGATCCTGTGGGAGCGGGCTTGCCCGCGAATGGCCCTTCGAGATGGTTCAGGCTGCCTCAGGCTCACAACCTTTCAAGACCATACGAATGATGGTCTCGGCCGCCGCGTCATAATCA       >  1:1835884/1‑149                                                                                                                                                                         CCACAGGGACTCCACAACCTTCAGGCATGTGGTGATCCTGTGGGAGCGGGCTTGCCCGCGAATGGCCCTTCGAGATGGTTCAGGCTGCCTCAGGCTCACAACCTTTCAAGACCATA                                        >  2:197908/1‑116                                                                                                                                                                         CCACAGGGACTCCACAACCTTCAGGCATGTGGTGATCCTGTGGGAGCGGGCTTGCCCGCGAATGGCCCTTCGAGATGGTTCAGGCTGCCTCAGGCTCACAACCTTTCAAGACCATA                                        <  1:197908/116‑1                                                                                                                                                                         CCACAGGGACTCCAAAACCTTCAGGCATGTGGTGATCCTGTGGGAGCGGGCTTGCCCGCGAATGGCCCTTCGAGATGGTTCAGGCTGCCTCAGGCTCACAACCTTTCAAGACCATACGAATGATGGTCTCGGCCGCCGCGTCATAATCAC      >  2:81337/1‑150                                                                                                                                                                         CCACAGGGACTCAACAACCTTCAAGAACCTGGTGATCCTGTGGGTTCGGGCGTGCCCGCGAATTGCCCTTCGAGATGGTTCAGGCTGCCTCAGGCTCACAAACATTCAAGACCATACGAATGATGGTCTCGGCCGCCGCGTCATAATCAC      >  2:1844130/1‑150                                                                                                                                                                          CACAGGGACTCCACAACCTTCAGGCATGTGGTGATCCTGTGGGAGCGGGCTTGCCCGCGAATGGCCCTTCGAGATGGTTCAGGCTGCCTCAGGCTCACAACCTTTCAAGACCATACGAATGATGGTCTCGGCCGCCGCGTCATAATCACT     <  1:1178112/150‑1                                                                                                                                                                           ACAGGGACTCCACAACCTTCAGGCATGTGGTGATCCTGTGGGAGCGGGCTTGCCCGCGAATGGCCCTTCGAGATGGTTCAGGCTGCCTCAGGCTCACAACCTTTCAAGACCATACGAATGATGGTCTCGGCCGCCGCGTCATAATCACTG    >  1:919665/1‑150                                                                                                                                                                           ACAGGGACTCCACAACCTTCAGGCATGTGGTGATCCTGTGGGAGCGGGCCTGCCCGCGAATGGCACTTCGAGATGGTTCAGGCTGCCTCAGGCTCACAACCTTTCAAGACCATACGAATGATTGTCTCGGCCGCCGCGTCATAATCACTG    >  2:439380/1‑150                                                                                                                                                                             AGGGACTCCACAACCTTCAGGCATGTGGTGATCCTGTGGGAGCGGGCTTGCCCGCGAATGGCCCTTCGAGATGGTTCAGGCTGCCTCAGGCTCACAACCTTTCAAGACCATACGAATGATGGTCTCGGCCGCCGCGTCATAATCACTGTC  >  1:1279970/1‑150                                                                                                                                                                                                                                                                                                                                    ACCTATGCCGACTTCGACTGGCAGATTTCTGCGGTGACCGGTAAGGCCAAGCTGGCCGACAGTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4886035‑4886209 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccattcgcgggcaagcccgctcccacaggGACTCCACAACCTTCAGGCATGTGGTGATCCTGTGGGAGCGGGCTTGCCCGCGAATGGCCCTTCGAGATGGTTCAGGCTGCCTCAGGCTCACAACCTTTCAAGACCATACGAATGATGGTCTCGGCCGCCGCGTCATAATCACTGTC  <  NC_002947/4886238‑4886092

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.