| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5093453 = | 121 (1.300) | 12 (0.130) | 11/242 | NT | 9.6% | coding (217/981 nt) | PP_4482 | AraC family transcriptional regulator |
| ? | NC_002947 | 5093527 = | 108 (1.200) | coding (143/981 nt) | PP_4482 | AraC family transcriptional regulator | |||||
CCGAGGAAGTGTTGCTGGTGGCGCAGCGTGTGCATCCGGATGTGGTCTACGAGTTGGTCTTCCTGCAGGCCGAGCCTGCGCAGGAAGGCGCCTGGCGGCTGCCGGGCGAGCCGTGGACCGGCCGCCTGGAGGGCTGCCACAAGCTCTTTCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5093605‑5093453‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACTTCCTCGGCCAACGCCAGGGTCAAAGGCCTGGTGCTGGGCCAGATGAGAAAACCGATTCGCTGGGTGGTCATAGGG > NC_002947/5093527‑5093673 CCGAGGAAGTGTTGCTGGTGGCGCAGCGTGTGCATCCGGATGTGGTCTACGAGTTGGTCTTCCTGCAGGCCGAGCCTGCGCAGGAAGGCGCCTGGCGGCTGCCGGGCGAGCCGTGGACCGGCCGCCTGGAGGGCTGCCACAAGCTCTTTC < 1:430282/150‑1CCGAGGAAGTGTTGCTGGTGGCGCAGCGTGTGCATCCGGATGTGGTCTACGAGTTGGTCTTCCTGCAGGCCGAGCCTGCGCAGGAAGGCGCCTGGCGGCTGCCGGGCGAGCCGTGGACCGGCCGCCTGGAGGGCTGCCACAAGCCCTTTC > 1:71339/1‑150 CGAGGAAGTGTTGCTGGTGGCGCAGCGTGTGCATCCGGATGTGGTCTACGAGTTGGTCTTCCTGCAGGCCGAGCCTGCGCAGGAAGGCGCCTGGCGGCTGCCGGGCGAGCCGTGGACCGGCCGCCTGGAGGGCTGCCACAAGCTCTTTCT > 2:991975/1‑150 AGGAAGTGTTGCTGGTGGCGCAGCGTGTGCATCCGGATGTGGTCTACGAGTTGGTCTTCCTGCAGGCCGAGCCTGCGCAGGAAGGCGCCTGGCGGCTGCCGGGCGAGCCGTGGACCGGCCGCCTGGAGGGCTGCCACAAGCTCTTTCTGC > 1:873767/1‑150 GCGCAGGAAGGCGCCTGGCGGCTGCCGGGCGAGCCGTGGACCGGCCGCCTGGAGGGCTGCCACAAGCTCTTTCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACTTC > 1:1117665/1‑150 GAAGGCGCCTGGCGGCTGCCGGGCGAGCCGTGGACCGGCCGCCTGGAGGGCTGCCACAAGCTCTTTCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACTTCCTCGGC > 1:84105/1‑150 GGCGCCTGGCGGCTGCCGGGCGAGCCGTGGACCGGCCGCCTGGAGGGCTGCCACAAGCTCTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGA > 2:1478538/1‑112 GGCGCCTGGCGGCTGCCGGGCGAGCCGTGGACCGGCCGCCTGGAGGGCTGCCACAAGCTCTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGA < 1:1478538/112‑1 ggGCCTGGCGGCTGCCGGGCGAGCCGTGGACCGGCCGCCTGGAGGGCTGCCACAAGCTCTTTCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACTTCCTCGGCCAAC > 2:1801087/3‑150 GCGCCTGGCGGCTGCCGGGCGAGCCGTGGACCGGCCGCCTGGAGGGCTGCCAGGCGC‑CTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACTTCCTCGGCCAACG > 1:1744132/1‑150 CTGGCGGCTGCCGGGCGAGCCGTGGACCGGCCGCCTGGAGGGCTGCCACAAGCTCTTTCTGC < 1:1628961/62‑1 CTGGCGGCTGCCGGGCGAGCCGTGGACCGGCCGCCTGGAGGGCTGCCACAAGCTCTTTCTGC > 2:1628961/1‑62 GGCTGCCGGGCGAGCCGTGGACCGGCCGCCTGGAGGGCTGCCAGGCGC‑CTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACTTCCTCGGCCAACGCCAGGGTCA > 1:859196/1‑150 TGCCGGGCGAGCCGTGGACCGGCCGCCTGGAGGGCTGCCACAAGCTCTTTCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACTTCCTCGGCCAACGCCAGGGTCAAA < 2:84105/150‑1 GGCGAGCCGTGGACCGGCCGCCTGGAGGGCTGCCAGGCGC‑CTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACTTCCTCGGCCAACGCCAGGGTCAAAGGCCTG < 2:1744132/150‑1 GCGAGCCGTGGACCGGCCGCCTGGAGGGCTGCCAGGCGC‑CTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACTTCCTCGGCCAACGCCAGGGTCAAAGGCCTGG < 2:859196/150‑1 GGCCGCCTGGAGGGCTGCCACAAGCTCTTTCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACTTCCTCGGCCAACGCCAGGGTCAAAGGCCTGGTGCTGGGCCAGAT < 1:1801087/150‑1 AAGCTCTTTCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACTTCCTCGGCCAACGCCAGGGTCAAAGGCCTGGTGCTGGGCCAGATGAGAAAACCGATTCGCTGGGT < 2:1117665/150‑1 CTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACTTCCTCGGCCAACGCCAGGGTCAAAGGCCTGGTGCTGGGCCAGATGAGAAAACCGATTCGCTGGGTGGTCATAGG < 2:100842/150‑1 TGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACTTCCTCGGCCAACGCCAGGGTCAAAGGCCTGGTGCTGGGCCAGATGAGAAAACCGATTCGCTGGGTGGTCATAGGG > 1:1802545/1‑150 CCGAGGAAGTGTTGCTGGTGGCGCAGCGTGTGCATCCGGATGTGGTCTACGAGTTGGTCTTCCTGCAGGCCGAGCCTGCGCAGGAAGGCGCCTGGCGGCTGCCGGGCGAGCCGTGGACCGGCCGCCTGGAGGGCTGCCACAAGCTCTTTCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5093605‑5093453‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACTTCCTCGGCCAACGCCAGGGTCAAAGGCCTGGTGCTGGGCCAGATGAGAAAACCGATTCGCTGGGTGGTCATAGGG > NC_002947/5093527‑5093673 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |