New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5110169 =	70 (0.750)	7 (0.080)	7/238	NT	9.1%	coding (585/1419 nt)	aroP‑II	aromatic amino acid transport protein
	?	NC_002947	5110208 =	73 (0.820)					coding (546/1419 nt)	aroP‑II	aromatic amino acid transport protein

CGTGAAGTTCTTCGGTGAAGCCGAATTCTGGTTCGCCATCATCAAAGTGGTCGCCATCGTCAGCATGATCGGCCTGGGTGCCTACCTGCTGACCAGCGGCAGCGGCGGCCCTGAAGCCACCGTGGCCAACCTGTGGACACACGGCGGCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5110319‑5110169 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcttcAGGGCCGCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAGGCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCACCGAAGAACTTCACGTTCATCAGGTTGATGGCGTTGATCAGCACGAAGAA  >  NC_002947/5110208‑5110354                                                                                                                                                                                                                                                                                                            CGTGAAGTTCTTCGGTGAAGCCGAATTCTGGTTCGCCATCATCAAAGTGGTCGCCATCGTCAGCATGATCGGCCTGGGTGCCTACCTGCTGACCAGCGGCAGCGGCGGCCCTGAAGCCACCGTGGCCAACCTGTGGACACACGGCGGCTT                                                                                                                                                      >  1:740993/1‑150                      CGAATTCTGGTTCGCCATCATCAAAGTGGTCGCCATCGTCAGCATGATCGGCCTGGGTGCCTACCTGCTGACCAGCGGCAGCGGCGGCCCTGAAGCCACCGTGGCCAACCTGTGGACACACGGCGG                                                                                                                                                         <  2:469387/126‑1                      CGAATTCTGGTTCGCCATCATCAAAGTGGTCGCCATCGTCAGCATGATCGGCCTGGGTGCCTACCTGCTGACCAGCGGCAGCGGCGGCCCTGAAGCCACCGTGGCCAACCTGTGGACACACGGCGG                                                                                                                                                         >  1:469387/1‑126                                                                                                               CTGAAGCCACCGTGGCCAACCTGTGGACACACGGCGGCTTCAGGGCCGCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAGGCCGATCATGCTGACGATGGCGA                                                                                       <  1:1527347/103‑1                                                                                                               CTGAAGCCACCGTGGCCAACCTGTGGACACACGGCGGCTTCAGGGCCGCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAGGCCGATCATGCTGACGATGGCGA                                                                                       >  2:1527347/1‑103                                                                                                                TGAAGCCACCGTGGCCAACCTGTGGACACACGGCGGCTTCAGGGCCGCCTCTGCCGCTGGTCAGCAGGTAGGCACCCAGGCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGC                                                        >  2:353059/1‑133                                                                                                                TGAAGCCACCGTGGCCAACCTGTGGACACACGGCGGCTTCAGGGCCGCCTCTGCCGCTGGTCAGCAGGTAGGCACCCAGGCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGC                                                        <  1:353059/133‑1                                                                                                                         CGTGGCCAACCTGTGG‑‑ACACGGTGGCTTCAGGGCCGCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAGGCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCACCGAAGAACTTCACGTTCATCAGG                            >  2:927684/1‑150                                                                                                                         CGTGGCCAACCTGTGG‑‑ACACGGTGGCTTCAGGGCCGCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAGGCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCACCGAAGAACTTCACGTTCATCAGG                            <  1:927684/150‑1                                                                                                                           TGGCCAACCTGTGGACACACGGCGGCTTCAGGGCCGCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAGGCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCACCGAAGAACTTCACGTTCATCAGG                            >  1:1481520/1‑150                                                                                                                                                 CGGCTTCAGGGCCGCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAGGCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCACCGAAGAACTTCACGTTCATCAGGTTGATGGCGTT                 <  1:311212/139‑1                                                                                                                                                 CGGCTTCAGGGCCGCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAGGCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCACCGAAGAACTTCACGTTCATCAGGTTGATGGCGTT                 >  2:311212/1‑139                                                                                                                                                  GGCTTCAGGGCCGCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAGGCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCACCGAAGAACTTCACGTTCATCAGGTTGATGGCGTTGATCAGCACGAA     <  1:2422314/150‑1                                                                                                                                                   GCTTCAGGGCCGCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAGGCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCACCGAAGAACTTCACGTTCATCAGGTTGATGGCGTTGATCAGCACGAAG    <  1:642067/150‑1                                                                                                                                                   GCTTCAGGGCCGCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAGGCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCACCGAAGAACTTCACGTTCATCAGGTTGATGGCGTTGATCAGCACGAAG    >  1:2425552/1‑150                                                                                                                                                   GCTTCAGGGCCGCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAGGCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCACCGAAGAACTTCACGTTCATCAGGTTGATGGCGTTGATCAGCACGAAG    >  1:2424776/1‑150                                                                                                                                                     TTCAGGGCCGCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAGGCCGATCATGCTGACGATTGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCACCGAAGAACTTCACGTTCATCAGGTTGATGGCGTTGATCAGCACGAAGAA  >  2:684227/1‑150                                                                                                                                                     TTCAGGGCCGCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAGGCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCACCGAAGAACTTCACGTTCATCAGGTTGATGGCGTTGATCAGCACGAAGAA  >  1:367431/1‑150                                                                                                                                                     TTCAGGGCCGCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAGGCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCACCGAAGAACTTCACGTTCATCAGGTTGATGGCGTTGATCAGCACGAAGAA  >  1:839472/1‑150                                                                                                                                                                                                                                                                                                            CGTGAAGTTCTTCGGTGAAGCCGAATTCTGGTTCGCCATCATCAAAGTGGTCGCCATCGTCAGCATGATCGGCCTGGGTGCCTACCTGCTGACCAGCGGCAGCGGCGGCCCTGAAGCCACCGTGGCCAACCTGTGGACACACGGCGGCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5110319‑5110169 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcttcAGGGCCGCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAGGCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCACCGAAGAACTTCACGTTCATCAGGTTGATGGCGTTGATCAGCACGAAGAA  >  NC_002947/5110208‑5110354

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.