New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5571471	77 (0.830)	8 (0.100)	6/222	NT	8.9%	intergenic (+42/+99)	queG/yicG	epoxyqueuosine reductase/inner membrane protein
	?	NC_002947	= 5571528	95 (1.150)					intergenic (+99/+42)	queG/yicG	epoxyqueuosine reductase/inner membrane protein

GTTGGGCAATGCGCCCTCCACGATTCCGGTGATCGAGGCGCTGAAGGCCAGGCGTGACGATGAATCGGAATTGGTGCGCGAGCATGTGGAGTGGGCGCTGGCCCGTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5571309‑5571471 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgggagcgggcgTGCCCGCGAACACCGGCGAAGCCGGTGCCATTCCCTGTGTTGCCTGCTTCGCGGGCGCGCCCGCTCCCACAAGGATGGCGCATGCTCTGAGGCTGGTCGCTATTGAGCTCCGTGACGGGCCAGCGCCCACTCCACATGCTCGCGCAC  <  NC_002947/5571528‑5571382                                                                                                                                                                                                                                                                                                                        GTTGGGCAATGCGCCCTCCTCGATTCCGGTGATCGAGGAGATCGATGCCTGGCGTGCTGCTGAAGGGGAATTGGTGCGCGAGCATGTGGAGTGGGCGCTGGCCCGTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTT                                                                                                                                                                  >  2:1901853/1‑150 GTTGGGCAATGCGCCCTCCACGATTCCGGTGATCGAGGCGCTGAAGGCCAGGCGTGACGATGAATCGGAATTGGTGCGCGAGCATGTGGAGTGGGCGCTGGCCCGTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTT                                                                                                                                                                  <  1:1027494/150‑1 GTTGGGCAATGCGCCCTCCACGATTCCGGTGATCGAGGCGCTGAAGGCCAGGCGTGACGATGAATCGGAATTGGTGCGCGAGCATGTGGAGTGGGCGCTGGCCCGTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTT                                                                                                                                                                  >  2:2170327/1‑150   TGGGCAATGCGCCCTCCACGATTCCGGTGATCGAGGCGCTGAAGGCCAGGCGTGACGATGAATCGGAATTGGTGCGCGAGCATGTGGAGTGGGCGCTGGCCCGTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGT                                                                                                                                                                <  2:1885568/150‑1    GGGCAAGGCGCCCTCCACGATTCCGGTGATCGAGGCGCTGAAGGCCAGGCGTGACGATGAATCGTAATTGGTGCGCGAGCATGTGGAGTGGGCGCTGGCCCGTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTG                                                                                                                                                               <  1:992653/150‑1     GGCAATGCGCCCTCCACGATTCCGGGGATCGAGGCGCTGAAGGCCAGGCGTGACGATGAATCGGAATTGGTGCGCGAGCATGTGGAGTGGGCGCTGGCCCGTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGG                                                                                                                                                              >  2:2042216/1‑150        AATGCGCCCTCCACGATTCCGGTGATCGAGGCGCTGAAGGCCAGGCGTGACGATGAATCGGAATTGGTGCGCGAGCATGTGGAGTGGGCGCTGGCCCGTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAG                                                                                                                                                           <  2:1991913/150‑1           GCGCCCTCCACGATTCCGGTGATCGAGGCGCTGAAGGCCAGGCGTGATGATGAATCGGAATTGGTGCGCGAGCATGTGGAGTGGGCGCTGGCCCGTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCGG                                                                                                                                                        <  1:756094/150‑1           GCGCCCTCCACGATTCCGGTGATCGAGGCGCTGAAGGCCAGGCGTGACGATGAATCGGAATTGGTGCGCGAGCATGTGGAGTGGGCGCTGGCCCGTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCGG                                                                                                                                                        <  1:320446/150‑1             GCCCTCCACGATTCCGGTGATCGAGGCGCTGAAGGCCAGGCGTTACGATGAATCGGAATTGGTGCGCGAGGGTGTGGCGTGGGCGCACTCCCGGGACGGGGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCGGGC                                                                                                                                                      >  1:2387554/1‑150             GCCCTCCACGATTCCGGTGATCGAGGCGCTGAAGGCCAGGCGTGACGATGAATCGGAATTGGTGCGCGAGCATGTGGAGTGGGCGCTGGCCCGTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCGGGC                                                                                                                                                      >  1:2064126/1‑150                            GGTGATCGAGGCGCTGAAGGCCAGGCGTGACGATGAATCGGAATTGGTGCGCGAGCATGTGGAGTGGGCGCTGGCCCGTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCGGGCGTGCCCGCGAACACC                                                                                                                                       >  1:278207/1‑150                                                                  ctGAATTGGTGCGCGAGCATGTGGAGTGGGCGCTGGCCCGTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATTCCCTGTGTTGCCTGCTTCGC                                                                                                 <  2:2389157/148‑1                                                                  CGGAATTGGTGCGCGAGCATGTGGAGTGGGCGCTGGCCCGTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATTCCCTGTGTTGCCTGCTTCGC                                                                                                 <  2:2387554/150‑1                                                                    GAATTGGTGCGCGAGCATGTGGAGTGGGCGCTGGCCCGTTGAGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATTCCCTGTGTTGCCTGCTTCGCGG                                                                                               <  1:1593453/150‑1                                                                    GAATTGGTGCGCGAGCATGTGGAGTGGGCGCTGGCCCGTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATTCGCTGTGTTGCCTGCTTCGCGG                                                                                               <  2:278207/150‑1                                                                          GTGCGCGAGCATGTGGAGTGGGCGCTGGCCCGTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATTCCCTGTGTTGCCTGCTTCGCGGGCGCGC                                                                                         <  1:1290052/150‑1                                                                                                          TCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGT                                                                                                                                                                >  2:974922/1‑47                                                                                                          TCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGT                                                                                                                                                                <  1:974922/47‑1                                                                                                                                           TGCGCCATCCTTGTGGGAGCGGGCGCGCCCGCGAACACCGGCGAAGCCGGTGCCATTCCCTGTGTTGCCTGCTTC                                                                                                   >  2:1781188/1‑75                                                                                                                                           TGCGCCATCCTTGTGGGAGCGGGCGCGCCCGCGAACACCGGCGAAGCCGGTGCCATTCCCTGTGTTGCCTGCTTC                                                                                                   <  1:1781188/75‑1                                                                                                                                                       GTGGGAGCGTGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATCCCCTGTGTTGCCTGCTTCGCGGGCGCGCCCGCTCCCACAAGGATGGCGCATGCTCTGAGGCTGGTCGCTATTGAGCTCCGTGACGGGCCAGCGCCCACTCCACAT            <  2:863405/150‑1                                                                                                                                                        TGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGC                                                                                                                         <  2:2258925/40‑1                                                                                                                                                        TGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGC                                                                                                                         >  1:2258925/1‑40                                                                                                                                                          GGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATTCCCTGTGTTGCCTGCTTCGCGGGCGCGCCCGCTCCCACAAGGATGGCGCATGCTCTGAGGCTGGTCGCTATTGAGCTCCGT                                    >  1:706137/1‑123                                                                                                                                                          GGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATTCCCTGTGTTGCCTGCTTCGCGGGCGCGCCCGCTCCCACAAGGATGGCGCATGCTCTGAGGCTGGTCGCTATTGAGCTCCGT                                    <  2:706137/123‑1                                                                                                                                                              CGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATTCCCTGTGTTGCCTGCTTCGCGGGCGCGCCCGCTCCCACAAGGATGGCGCATGCTCTGAGGCTGGTCGCTATTGAGCTCCGTGACGGGCCAGCGCCCACTCCACATGCTCGCG     <  2:1732549/150‑1                                                                                                                                                               GGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATTCCCTGTGTTGCCTGCTTCGCGGGCGCGCCCGCTCCCACAAGGATGGCGCATGCTCTGAGGCTGGTCGCTATTGAGCTCCGTGACGGGCCAGCGCCCACTCCACATGCTCGCGC    >  2:1677705/1‑150                                                                                                                                                               GGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATTCCCTGTGTTGCCTGCTTCGCGGGCGCGCCCGCTCCCACAAGGATGGCGCATGCTCTGAGGCTGGTCGCTATTGAGCTCCGTGACGGGCCAGCGCCCACTCCACATGCTCGCGC    <  2:1575231/150‑1                                                                                                                                                                 GCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATTCCCTGTGTTGCCTGCTTCGCGGGCGCGCCCGCTCCCACAAGGATGGCGCATGCTCTGAGGCTGGTCGCTATTGAGCTCCGTGACGGGCCAGCGCCCACTCCACATGCTCGCGCAC  >  2:2117529/1‑150                                                                                                                                                                 GCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATTCCCTGTGTTGCCTGCTTCGCGGGCGCGCCCGCTCCCACAAGGATGG                                                                       <  1:273023/81‑1                                                                                                                                                                 GCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATTCCCTGTGTTGCCTGCTTCGCGGGCGCGCCCGCTCCCACAAGGATGG                                                                       >  2:273023/1‑81                                                                                                                                                                                                                                                                                                                        GTTGGGCAATGCGCCCTCCACGATTCCGGTGATCGAGGCGCTGAAGGCCAGGCGTGACGATGAATCGGAATTGGTGCGCGAGCATGTGGAGTGGGCGCTGGCCCGTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5571309‑5571471 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgggagcgggcgTGCCCGCGAACACCGGCGAAGCCGGTGCCATTCCCTGTGTTGCCTGCTTCGCGGGCGCGCCCGCTCCCACAAGGATGGCGCATGCTCTGAGGCTGGTCGCTATTGAGCTCCGTGACGGGCCAGCGCCCACTCCACATGCTCGCGCAC  <  NC_002947/5571528‑5571382

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.