New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5724339	32 (0.340)	14 (0.190)	11/202	NT	28.9%	intergenic (‑185/+109)	PP_5024/opgH	amino acid ABC transporter substrate‑binding protein/glucans biosynthesis glucosyltransferase H
	?	NC_002947	= 5724358	43 (0.570)					intergenic (‑204/+90)	PP_5024/opgH	amino acid ABC transporter substrate‑binding protein/glucans biosynthesis glucosyltransferase H

TAGCAAGAAAAGTAGCGAATCTTATTGTGTTGGCACGGCCGTACTGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5724167‑5724339 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcgcgggtgaacccgctcctacCAGGGATACACATGCCCTTGTAGGAGCGGGTTCACCCGCGAAGCTTTTTGGCCTAACCCCCTCATTTTGGCCAACAAAGTCCCCCTGCGGCTCTAGGTCCACGGGCCGCCATGCGTTAGCATCCCTCTCCGATACGACGCTTCGGCC  <  NC_002947/5724358‑5724212                                                                                                                                                                                                                                                                                                                                  TAGCAAGAAAAGTAGCGAATCTTATTGTGTTGGCACGGCCGTACTGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGC                                                                                                                                                                            >  2:2194358/1‑150   GCAAGAAAAGTAGCGAATCTTATTGTGTTGGCACGGCCGTACTGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTT                                                                                                                                                                          <  1:1827551/150‑1      AGAAAAGTAGCGAATCTTATTGTGTTGGCACGGCCGTACTGGCCGAAGCGTCGTATCGGAGAGGGGTTCGATCGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGC                                                                                                                                                                       <  1:643721/150‑1      AGAAAAGTAGCGAATCTTATTGTGTTGGCACGGCCGTACTGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGC                                                                                                                                                                       <  2:2211735/150‑1        AAAAGTAGCGAATCTTATTGTGTTGGCACGGCCGTACTGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGG                                                                                                                                                                     <  2:1906934/150‑1         AAAGTAGCGAATCTTATTGTGTTGGCACGGCCGTACTGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG                                                                                                                                                                    <  1:1557242/150‑1          AAGTAGCGAATCTGATTGTGTTGGCACGGCCGTACTGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGg                                                                                                                                                                   >  2:2311348/1‑149               GCGAATCTTATTGTGTTGGCACGGCCGTACTGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACC                                                                                                                                                              >  1:2326717/1‑150                 GAATCTTATTGTGTTGGCACGGCCGTACTGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCG                                                                                                                                                            >  1:863095/1‑150                 GAATCTTATTGTGTTGGCACGGCCGTACTGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCG                                                                                                                                                            <  2:1914802/150‑1                   ATCTTATTGTGTTGGCACGGCCGTACTGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCG                                                                                                                                                                      >  1:1605623/1‑138                   ATCTTATTGTGTTGGCACGGCCGTACTGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCG                                                                                                                                                                      <  2:1605623/138‑1                    TCTTATTGTGTTGGCACGGCCGTACTGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTC                                                                                                                                                         <  2:2326717/150‑1                     CTTATTGTGTTGGCACGGCCGTACTGGCCGAAGCGTCGTATCGGAGAGGGAGGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTTCACCCGCgaa                                                                                                                                                        <  2:556419/150‑4                       TATTGTGTTGGCACGGCCGTACTGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTA                                                                                                                                                      <  1:2194358/150‑1                                       CCGTACTGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAA                                                                                                                                                                >  2:1069040/1‑124                                       CCGTACTGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAA                                                                                                                                                                <  1:1069040/124‑1                                                 CGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACCAGGGATACACATGCCCTTGTAGGA                                                                                                                            <  1:2210710/150‑1                                                  GAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACCAGGGATACACATGCCCTT                                                                                                                                  >  2:463519/1‑143                                                  GAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACCAGGGATACACATGCCCTT                                                                                                                                  <  1:463519/143‑1                                                   AAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACCAGGGATACACATGCCCTTGTAGGAGC                                                                                                                          <  1:959857/150‑1                                                                           TAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGC                                                                                                                                                           <  2:150380/93‑1                                                                           TAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGC                                                                                                                                                           >  1:150380/1‑93                                                                                 ATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACCAGGGATACACATGCCCTTGTAGGAGC                                                                                                                          <  1:60766/120‑1                                                                                 ATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACCAGGGATACACATGCCCTTGTAGGAGC                                                                                                                          >  2:60766/1‑120                                                                                                    GAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACCAGGGATACACATGCCCTTGTAGGAGCGG                                                                                                                        <  2:2179882/103‑1                                                                                                    GAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACCAGGGATACACATGCCCTTGTAGGAGCGG                                                                                                                        >  1:2179882/1‑103                                                                                                                          GCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACCAGGGATACACATGCCCTTGTAGGAGCGG                                                                                                                        <  2:1665645/81‑1                                                                                                                          GCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACCAGGGATACACATGCCCTTGTAGGAGCGG                                                                                                                        >  1:1665645/1‑81                                                                                                                            CAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACCAGGGATACACATGCCCTTG                                                                                                                                 >  1:2159317/1‑70                                                                                                                            CAAAATGAGGGGGTGAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACCAGGGATACACATGCCCTTG                                                                                                                                 <  2:2159317/70‑1                                                                                                                                             GCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACCAGGGATACACATGCCCTTGTAGGAGC                                                                                                                          >  2:1694231/1‑60                                                                                                                                             GCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACCAGGGATACACATGCCCTTGTAGGAGC                                                                                                                          <  1:1694231/60‑1                                                                                                                                                            GGGTGAACCCGCTCCTACCAGGGATACACATGCCCTTGTAGGAGCGGGTTCACCCGCGAAGCTTTTTGGCCTAACCCCCTCATTTTGGCCAACAAAGTCCCCCTGCGGCTCTAGGTCCACGGGCCGCCATGCGTTCGCATCCCTCTCCGA                 >  2:1355921/1‑150                                                                                                                                                              gttcACCCGCTCCTACCAGGGATACACATGCCCTTGTAGGAGCGGGTTCACCCGCGAAGCTTTTTGGCCTAACCCCCTCATTTTGGCCAACAAAGTCCCCCTGCGGCTCTAG                                                     >  1:311743/5‑112                                                                                                                                                              gttcACCCGCTCCTACCAGGGATACACATGCCCTTGTAGGAGCGGGTTCACCCGCGAAGCTTTTTGGCCTAACCCCCTCATTTTGGCCAACAAAGTCCCCCTGCGGCTCTAG                                                     <  2:311743/108‑1                                                                                                                                                                 AACCCGCTCCTACCAGGGATACACATGCCCTTGTAGGAGCGGGTTCACCCGCGAAGCTTTTTGGCCTAACCCCCTCATTTTGGCCAACAAAGTCCCCCTGCGGCTCTAGGTCCACGGGCCGCCATGCGTTAGCATCCCTCTCCGATACGA            <  2:1525058/150‑1                                                                                                                                                                 AACCCGCTCCTACCAGGGATACACATGCCCTTGTAGGAGCGGGTTCACCCGCGAAGCTTTTTGGCCTAACCCCCTCATTTTGGCCAACAAAGTCCCCCTGCGGCTCTAGGTCCACGGGCCGCCATGCGTTAGCATCCCTCTCCGATACGA            >  1:1645213/1‑150                                                                                                                                                                   CCCGCTCCTACCAGGGATACACATGCCCTTGTAGGAGCGGGTTCACCCGCGAAGCTTTTTGGCCTAACCCCCTCATTTTGGCCAACAAAGTCCCCCTGCGGCTCTAGGTCCACGGGCCGCCATGCGTTAGCATCCCTCTCCGATACGACG          >  1:54955/1‑150                                                                                                                                                                    CCGCTCCTACCAGGGATACACATGCCCTTGTAGGAGCGGGTTCACCCGCGAAGCTTTTTTTTTTTTTTTTCTCATTTTGGCCAACAAAGTCCCCCTGCGGCTCTAGGTCCACGGGCCGCCATGCGTTCGCCTCCCTCTCCGCTACGACGC         >  2:956941/1‑150                                                                                                                                                                    CCGCTCCTACCAGGGATACACATGCCCTTGTAGGAGCGGGTTCACCCGCGAAGCTTTTTGGCCTAACCCCCTCATTTTGGCCAACAAAGTCCCCCTGCGGCTCTAGGTCCACGGGCCGCCATGCGTTAGCATCCCTCTCCGATACGACGC         >  1:1927241/1‑150                                                                                                                                                                    CCGCTCCTACCAGGGATACACATGCCCTTGTAGGAGCGGGTTCACCCGCGAAGCTTTTTGGCCTAACCCCCTCATTTTGGCCAACAAAGTCCCCCTGCGGCTCTAGGTCCACGGGCCGCCATGCGTTAGCATCCCTCTCCGATACGACGC         >  1:1618730/1‑150                                                                                                                                                                      GCTCCTACCAGGGATACACATGCCCTTGTAGGAGCGGGTTCACCCGCGAAGCTTTTTGGCCTAACCCCCTCATTTTGGCCAACAAAGTCCCCCTGCGGCTCTAGGTCCACGGGCCGCCATGCGTTAGCATCCCTCTCCGATACGACGCTT       >  1:1501468/1‑150                                                                                                                                                                      GCTCCTACCAGGGATACACATGCCCTTGTAGGAGCGGGTTCACCCGCGAAGCTTTTTGGCCTAACCCCCTCATTTTGGCCAACAAAGTCCCCCTGCGGCTCTAGGTCCACGGGCCGCCATGCGTTAGCATCCCTCTCCGATACGACGCTT       >  1:1433593/1‑150                                                                                                                                                                          CTACCAGGGATACACATGCCCTTGTAGGAGCGGGTTCACCCGCGAAGCTTTTTGGCCTAACCCCCTCATTTTGGCCAACAAAGTCCCCCTGCGGCTCTAGGTCCACGGGCCGCCATGCGTTAGCATCCCTCTCCGATACGACGCTTCGGC   <  2:54955/150‑1                                                                                                                                                                          CTACCAGGGATACACATGCCCTTGTAGGAGCGGGTTCACCCGCGAAGCTTTTTGGCCTAACCCCCTCATTTTGGCCAACAAAGTCCCCCTGCGGCTCTAGGTCCACGGGCAGCACTGAGTTGGTTTATTTCTGCTGTACGACGCTTCGGC   >  1:1107997/1‑150                                                                                                                                                                           TACCAGGGATACACATGCCCTTGTAGGAGCGGGTTCACCCGCGAAGCTTTTTGGCCTAACCCCCTCATTTTGGCCAACAAAGTCCCCCTGCGGCTCTAGGTCCACGGGCCGCCATGCGTTAGCATCCCTCTCCGATACGACGCTTCGGCC  >  2:1863096/1‑150                                                                                                                                                                            ACCAGGGATACACATGCCCTTGTAGGAGCGGGTTCACCCGCGAAGCTTTTTGGCCTAACCCCCTCATTTTGGCCAACAAAGTCCCCCTGCGGCTCTAG                                                     <  1:2424728/98‑1                                                                                                                                                                            ACCAGGGATACACATGCCCTTGTAGGAGCGGGTTCACCCGCGAAGCTTTTTGGCCTAACCCCCTCATTTTGGCCAACAAAGTCCCCCTGCGGCTCTAG                                                     >  2:2424728/1‑98                                                                                                                                                                             CCAGGGATACACATGCCCTTGTAGGAGCGGGTTCACCCGCGAAGCTTTTTGGCCTAACCCCCTCATTTTGGCCAACAAAGTCCCCCTGCGGCTCTAGGTCCACGGGCCGC                                        >  2:1847350/1‑110                                                                                                                                                                             CCAGGGATACACATGCCCTTGTAGGAGCGGGTTCACCCGCGAAGCTTTTTGGCCTAACCCCCTCATTTTGGCCAACAAAGTCCCCCTGCGGCTCTAGGTCCACGGGCCGC                                        <  1:1847350/110‑1                                                                                                                                                                                                                                                                                                                                  TAGCAAGAAAAGTAGCGAATCTTATTGTGTTGGCACGGCCGTACTGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5724167‑5724339 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcgcgggtgaacccgctcctacCAGGGATACACATGCCCTTGTAGGAGCGGGTTCACCCGCGAAGCTTTTTGGCCTAACCCCCTCATTTTGGCCAACAAAGTCCCCCTGCGGCTCTAGGTCCACGGGCCGCCATGCGTTAGCATCCCTCTCCGATACGACGCTTCGGCC  <  NC_002947/5724358‑5724212

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.