New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5756570 =	109 (1.170)	5 (0.060)	4/240	NT	5.3%	intergenic (+191/‑497)	glnG/PP_5050	two‑component system DNA‑binding response regulator GlnL/GlnG/transposase
	?	NC_002947	5756612 =	74 (0.830)					intergenic (+233/‑455)	glnG/PP_5050	two‑component system DNA‑binding response regulator GlnL/GlnG/transposase

TACCCGCGAATACGGTGGCGGCGGCAACGCTGAACGGCAGGTGGAGATTGGCCAGCAGGCGCGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGACCCCGATATGTGCCCACCGCCGTGGTAGGCGCGGGTTTACCCGCGAATACGGTGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5756723‑5756570 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCACGGCGTGGACACACATCGCGG  >  NC_002947/5756612‑5756759                                                                                                                                                                                                                                                                                                                TACCCGCGAATTTGGTGGCGGCGGCAACGCTGACCGGCAGGTGGAGATGGGCCAGCAGGCGCGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGACCCCGATATGTGCCCACCGCCGTGGTAGGCGCGGGTTTACCCGCGAATACGGTG                                                                                                                                                          <  2:360064/150‑1    CCGCGAATACGGTGGCGGCGGCAACGCTGAACGGCAGGTGGAGATTGGCCAGCAGGCGCGGCCTCTTCGCGTGTGAACCCGCTCCTACGACGACCCCGATATGTGCCCACCGCCGTGGTAGGCGCGGGTTTACCCGCGAATACGGTGGCG                                                                                                                                                       >  1:765929/1‑150    CCGCGAATACGGTGGCGGCGGCAACGCTGAACGGCAGGTGGAGATTGGCCAGCAGGCGCGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGACCCCGATATGTGCCCACCGCCGTGGTAGGCGCGGGTTTACCCGCGAATACGGTGGCG                                                                                                                                                       >  1:799531/1‑150                                                                                                  CCCGATATGTGCCCACCGCCGTGGTAGGCGCGGGTTTACCCGCGAATACGGTGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAA                                                                                                          >  1:1052583/1‑101                                                                                                  CCCGATATGTGCCCACCGCCGTGGTAGGCGCGGGTTTACCCGCGAATACGGTGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAA                                                                                                          <  2:1052583/101‑1                                                                                                              tccaCGCCGTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGC‑GTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCG                                            >  1:2014541/5‑150                                                                                                                ACCGCCGTGGTAGGCGCGGGTTTACCCGCGAATACGGTGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCC                                                                         <  1:2096646/120‑1                                                                                                                ACCGCCGTGGTAGGCGCGGGTTTACCCGCGAATACGGTGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCC                                                                         >  2:2096646/1‑120                                                                                                                                                         GGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCACGGCGTGGACACACATCGCGG  <  2:1430007/150‑1                                                                                                                                                                                                                                                                                                                TACCCGCGAATACGGTGGCGGCGGCAACGCTGAACGGCAGGTGGAGATTGGCCAGCAGGCGCGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGACCCCGATATGTGCCCACCGCCGTGGTAGGCGCGGGTTTACCCGCGAATACGGTGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5756723‑5756570 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCACGGCGTGGACACACATCGCGG  >  NC_002947/5756612‑5756759

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.