New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5765441 | 120 (1.290) | 7 (0.080) | 6/236 | NT | 5.8% | coding (41/768 nt) | PP_5059 | hypothetical protein |
? | NC_002947 | = 5765457 | 114 (1.290) | coding (57/768 nt) | PP_5059 | hypothetical protein |
GCCCGACCGGCAGCAGCAAGCGCAAGGAACGCCCGCAGGATGACGACTTCCAGCTGAGCCAGGCACTGAGCCTGCTCAAGGGCCTGAACATCACCAAGGGCGACTGAGCCACCCTATGCGTTATCTGCTGTGTCTGTTGTTTTGCCTGATGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5765286‑5765441 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccggTGCCGCTTGCGCGATTCCGGCCATCAGGCAAAACAACAGACACAGCAGATAACGCATAGGGTGGCTCAGTCGCCCTTGGTGATGTTCAGGCCCTTGAGCAGGCTCAGTGCCTGGCTCAGCTGGAAGTCGTCATCCTGCGGGCGTTCCTT < NC_002947/5765457‑5765309 GCCCGACCGGCAGCAGCAAGCGCAAGGAACGCCCGCAGGATGACGACTTCCAGCTGAGCCAGGCACTGAGCCTGCTCAAGGGCCTGAACATCACCAAGGGCGACTGAGCCACCCTATGCGTTATCTGCTGTGTCTGTTGTTTTGCCTGAT < 1:279035/150‑1 CCCGACCGGCAGCAGCAAGCGCAAGGAACGCCCGCAGGATGACGACTTCCAGCTGAGCCAGGCACTGAGCCTGCTCAAGGGCCTGAACATCACCAAGGGCGACTGAGCCACCCTATGCGTTATCTGCTGTGTCTGTTGTTTTGCCTGATG > 2:1015681/1‑150 CCGACCGGCAGCAGCAAGCGCAAGGAACGCCCGCAGGATGACGACTTCCAGCTGAGCCAGGCACTGAGCCTTCGCAAGGGCCTGAACATCACCAAGGGCGACTGAGCCACCCTATGCGTTATCTGCTGTGTCTGTTGTTTTGCCTGATGG > 1:765520/1‑150 CCGACCGGCAGCAGCAAGCGCAAGGAACGCCCGCAGGATGACGACTTCCAGCTGAGCCAGGCACTGAGCCTGCTCAAGGGCCTGAACATCACCAAGGGCGACTGAGCCACCCTATGCGTTATCTGCTGTGTCTGTTGTTTTGCCTGATGG > 1:215018/1‑150 GACCGGCAGCAGTAAGCGCAAGGAACGCCCGCAGGATGACGACTTCCAGCTGAGCCAGGCACTGAGCCTGCTCAAGGGGCTGAACAACACCCAGGGCGCTTGCGCCACCCTATGCGTTAACTGCTGTGTCTTTTGTTTTGCCTGATGGCC < 2:1330449/150‑1 GACCGGCAGCAGCAAGCGCAAGGAACGCCCGCGGGATGACGACTTCCAGCTGGGCCAGGCACTGAGCCTGCTCAAGGGCCTGAACATCACCAAGGGCGACTGAGCCACCCTATGCGTTATCTGCTGTGTCTGTTGTTTTGCCTGATGGCC < 2:351292/150‑1 GACCGGCAGCAGCAAGCGCAAGGAACGCCCGCAGGATGACGACTTCCAGCTGAGCCAGGCACTGAGCCTGCTCAAGGGCCTGAACATCACCAAGGGCGACTGAGCCACCCTATGCGTTATCTGCTGTGTCTGTTGTTTTGCCTGATGGCC < 1:1015681/150‑1 GCCCGCAGGATGACGACTTCCAGCTGAGCCAGGCACTGAGCCTGCTCAAGGGCCTGAACATCACCAAGGGCGACTGAGCCACCCTATGCGTTATCTGCTGTGTCTGTTGTTTTGCCTGATGGCCGGTGCCGCTTGCGCGATTCCGGCCAT < 2:1489644/150‑1 CCAGGCACTGAGCCTGCTCAAGGGCCTGAACATCACCAAGGGCGACTGAGCCACCCTATGCGTTATCTGCTGTGTCTGTTGTTTTGCCTGATGGCCGGTGCCGCTTGCGCGATTCCGGCCATCAG < 1:1401657/125‑1 CCAGGCACTGAGCCTGCTCAAGGGCCTGAACATCACCAAGGGCGACTGAGCAACCCTATGCGTTATCTGCTGTGTCTGTTGTTTTGCCTGATGGCCGGTGCCGCTTGCGCGATTCCGGCCATCAG > 2:1401657/1‑125 TCAAGGGCCTGAACATCACCAAGGGCAACTGAGCCACCCTATGCGTTATCTGCTGTGTCTGTTGTTTTGCCTGATGGCCGGTGCCGCTTGCGCGATTCCGG > 1:1604213/1‑101 TCAAGGGCCTGAACATCACCAAGGGCAACTGAGCCACCCTATGCGTTATCTGCTGTGTCTGTTGTTTTGCCTGATGGCCGGTGCCGCTTGCGCGATTCCGG < 2:1604213/101‑1 GACTGAGCCACCCTATGCGTTATCTGCTGTGTCTGTTGTTTTGCCTGATGGCCGGTGCCGCTTGCGCGATTCCGGCCATCAG > 1:1383292/1‑82 GACTGAGCCACCCTATGCGTTATCTGCTGTGTCTGTTGTTTTGCCTGATGGCCGGTGCCGCTTGCGCGATTCCGGCCATCAG < 2:1383292/82‑1 GCCGGTGCCGCTTGCGCGATTCCGGCCATCAGGCAAAACAACAGACACAGCAGATAACGCATAGGGT > 1:2062652/1‑67 GCCGGTGCCGCTTGCGCGATTCCGGCCATCAGGCAAAACAACAGACACAGCAGATAACGCATAGGGT < 2:2062652/67‑1 CGGTGCCGCTTGCGCGATTCCGGCCATCAGGCAAAACAACAGACACAGCAGATAACGCATAGGGTGGCTCAGTCGCCCTTGGTGATGTTCAGGCCCTTGAGCAGGCTCAGTGCCTGGCTCAGCTGGAAGTCGTCATCCTGCGGGCGTTCC < 2:2383947/150‑1 CGGTGCCGCTTGCGCGATTCCGGCCATCAGGCAAAACAACAGACACAGCAGATAACGCATAGGGTGGCTCAGTCGCCCTTGGTGATGTTCAGGCCCTTGAGCAGGCTCAGTGCCTGGCTCAGCTGGAAGTCGTCATCCTGCGGGCGTTCC > 2:71747/1‑150 GTGCCGCTTGCGCGATTCCGGCCATCAGGCAAAACAACAGACACAGCAGATAACGCATAGGGTGGCTCAGTCGCCCTTGGTGATGTTCAGGCCCTTGAGCAGGCTCAGTGCCTGGCTCAGCTGGAAGTCGTCATCCTGCGGGCGTTCCTT < 2:1886337/150‑1 GTGCCGCTTGCGCGATTCCGGCCATCAGGCAAAACAACAGACACAGCAGATAACGCATAGGGTG > 2:1482219/1‑64 GTGCCGCTTGCGCGATTCCGGCCATCAGGCAAAACAACAGACACAGCAGATAACGCATAGGGTG < 1:1482219/64‑1 GTGCCGCTTGCGCGATTCCGGCCATCAGGCAAAACAACAGACACAGCAGATAACGCATAGGGGGGCTCAGTCGCCCTTGGTGATGTTCAGGCCCTTGAGCAGGCTCAGTGCCTGGCTCAGCTGGAAGTCGTCATCCTGCGGGCGTTCCTT > 2:195318/1‑150 GCCCGACCGGCAGCAGCAAGCGCAAGGAACGCCCGCAGGATGACGACTTCCAGCTGAGCCAGGCACTGAGCCTGCTCAAGGGCCTGAACATCACCAAGGGCGACTGAGCCACCCTATGCGTTATCTGCTGTGTCTGTTGTTTTGCCTGATGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5765286‑5765441 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccggTGCCGCTTGCGCGATTCCGGCCATCAGGCAAAACAACAGACACAGCAGATAACGCATAGGGTGGCTCAGTCGCCCTTGGTGATGTTCAGGCCCTTGAGCAGGCTCAGTGCCTGGCTCAGCTGGAAGTCGTCATCCTGCGGGCGTTCCTT < NC_002947/5765457‑5765309 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |