New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5827662 =	80 (0.860)	8 (0.090)	8/240	NT	9.5%	coding (519/711 nt)	mtgA	monofunctional biosynthetic peptidoglycan transglycosylase
	?	NC_002947	5827692 =	75 (0.840)					coding (549/711 nt)	mtgA	monofunctional biosynthetic peptidoglycan transglycosylase

GGGCCCGCCCAGCTGGCTCATCTGCCGGCGAATCCAGCCGGCCCGGCTGGCCACGTAGGCACTCGGTCGGCTGGCACTCCACTTGATTGGGCTTGGCAGCACCGCTGCCAGCTGCGCTGCCTGCTGGCGGCTGAGCCGGCTGGCGTCGACGCC‑‑A‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5827815‑5827662 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcc‑‑aGCAGG‑‑CA‑GCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTGGAGTGCCAGCCGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACT  >  NC_002947/5827692‑5827837                                                                                                                                                                                                                                                                                                                   GGGCCCGCCCAGCTGGCTCATCTGCCGGCGAATCCAGCCGGCCCGGCTGGCCACGTAGGCACTCGGTCGGCTGGCACTCCACTTGATTGGGCTTGGCAGCACCGCTGCCAGCTGCGCTGCCTGCTGGCGGCTGAGCCGGCTGGCGTCGAC                                                                                                                                                             <  1:2129361/150‑1    CCCGCCCAGCTGGCTCATCTGCCGGCGAATCCAGCCGGCCCGGCTGGCCACGTAGGCACTCGGTCGGCTGGCACTCCACTTGATTGGGCTTGGCAGCACCGCTGCCAGCTGCGCTGCCTGCTGGCGGCTGAGCCGGCTGGCGTCGACGCC                                                                                                                                                          >  1:2406411/1‑150                                                                                                                 TGCGCTGCCTGCTGGCGGTTGAGCCGGCTGGCGTCGACGCCAAAGTGAT‑‑AACGCGCCGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTGGAGTGCCAGCCGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGC                                               <  2:704804/146‑1                                                                                                                 TGCGCTGCCTGCTGGCGGTTGAGCCGGCTGGCGTCGACGCC‑‑AAAGTGATAACGCGCCGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTGGAGTGCCAGCCGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGC                                               >  1:704804/1‑146                                                                                                                       GCCTGCTGGCGGCTGAGCCGGCTGGCGTCGACGCC‑‑AGCAGG‑‑CA‑GCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTGGAGTGCCAGCCGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCT                                  >  1:2256459/1‑150                                                                                                                          TGCTGGCTGCTGAGCCGGCTGGCGTCGACGCC‑‑AGCAGG‑‑CA‑GCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTGGAGTGCCAGCCGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGG                               >  2:1214934/1‑150                                                                                                                           GCTGGCGGCTGAGCCGGCTGGCGTCGACGCC‑‑AGCAGG‑‑CA‑GCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTGGAGTGCCAGCCGACCGAGTGCC                                                                                 <  1:252742/99‑1                                                                                                                           GCTGGCGGCTGAGCCGGCTGGCGTCGACGCC‑‑AGCAGG‑‑CA‑GCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTGGAGTGCCAGCCGACCGAGTGCC                                                                                 >  2:252742/1‑99                                                                                                                            CTGGCGGCTGAGCCGGCTGGCGTCGACGCC‑‑AGCAGG‑‑CA‑GCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTGGAGTGCCAGCCGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCG                             >  1:2257281/1‑150                                                                                                                             TGGCGGCTGAGCCGGCTGGCGTCGACGCC‑‑AGCAGG‑‑CA‑GCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTGGAGTGCCAGCCGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGG                            <  1:1214934/150‑1                                                                                                                                                      CGCC‑‑AGCAGG‑‑CA‑GCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTGGAGTGCCAGCCGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGAC   >  1:868989/1‑150                                                                                                                                                       GCC‑‑AGCAGG‑‑CA‑GCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTGGAGTGCCAGCCGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACT  >  2:2098691/1‑150                                                                                                                                                                                                                                                                                                                   GGGCCCGCCCAGCTGGCTCATCTGCCGGCGAATCCAGCCGGCCCGGCTGGCCACGTAGGCACTCGGTCGGCTGGCACTCCACTTGATTGGGCTTGGCAGCACCGCTGCCAGCTGCGCTGCCTGCTGGCGGCTGAGCCGGCTGGCGTCGACGCC‑‑A‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5827815‑5827662 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcc‑‑aGCAGG‑‑CA‑GCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTGGAGTGCCAGCCGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACT  >  NC_002947/5827692‑5827837

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.