New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5874614	126 (1.350)	9 (0.110)	7/228	NT	7.1%	intergenic (‑50/+98)	PP_5148/ilvA‑II	membrane protein/threonine deaminase
	?	NC_002947	= 5874674	119 (1.400)					intergenic (‑110/+38)	PP_5148/ilvA‑II	membrane protein/threonine deaminase

TCGCCCTGACGGCGAGCGCGCCAGGTCCAGATCGCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5874455‑5874614 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggcttGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAAGCCCGCGAAGAAGCTACCGCAAAATGCCAGTTTAAGGACGACCGAGAGATGGAACACCTGACCACGCTCAAGACCCTGCACATCATC  <  NC_002947/5874674‑5874526                                                                                                                                                                                                                                                                                                                       TCGCCCTGACGGCGAGCGCGCCAGGTCCAGATCGCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCT                                                                                                                                                                 >  2:1628087/1‑150 TCGCCCTGACGGCGAGCGCGCCAGGTCCAGATCGCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCT                                                                                                                                                                 >  2:1918022/1‑150    CCCTGACGGCGAGCGCGCCAGGTCCAGATCGCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCG                                                                                                                                                              >  2:2027825/1‑150    CCCTGACGGCGAGCGCGCCAGGTCCAGATCGCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCG                                                                                                                                                              >  2:2053390/1‑150     CCTGACGGCGAGCGCGCCAGGTCCAGATCGCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGC                                                                                                                                                             >  1:1383924/1‑150       TGACGGCGAGCGCGCCAGGTCCAGATCGCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGG                                                                                                                                                           >  1:154931/1‑150       TGACGGCGAGCGCGCCAGGTCCAGATCGCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGG                                                                                                                                                           <  1:497305/150‑1           GGCGAGCGCGCCAGGTCCAGATCGCCAGGCCCAGGGCGCCCAGAAACGAGAGCGCTGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTT                                                                                                                                                       >  1:1995053/1‑150           GGCGAGCGCGCCAGGTCCAGATCGCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTT                                                                                                                                                       >  1:742453/1‑150           GGCGAGCGCGCCAGGTCCAGATCGCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTT                                                                                                                                                       >  2:2141725/1‑150                             AGATCGCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTGCCCGCTCCCACAGGTAC                                                                                                                                     >  1:1992778/1‑150                                                                 CGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGA                                                                                                 <  2:153467/150‑1                                                                     GGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGG                                                                                             <  1:1608443/150‑1                                                                        GATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGC                                                                                                                                                         <  1:2162929/87‑1                                                                        GATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGC                                                                                                                                                         >  2:2162929/1‑87                                                                         ATGATGTGCAGGGTCTTGAGCGTGGTAATATGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAA                                                                                         <  1:1819228/150‑1                                                                            ATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAAGCC                                                                                      <  2:1992778/150‑1                                                                                   GGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAA                                                                                         >  1:1606572/1‑140                                                                                   GGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAA                                                                                         <  2:1606572/140‑1                                                                                    GGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAA                                                                                         <  2:735764/139‑1                                                                                    GGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAA                                                                                         >  1:735764/1‑139                                                                                                                                                        CGCGGGCTTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAAGCCCGCGAAGAAGCTACCGCAAAATGCCAGTTTAAGGACGACCGAGAGATGGAACACCTGACCACGCTCAAGACCCTGC          <  2:454367/150‑1                                                                                                                                                         GCGNGCTTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAAGCCCGCGAAGAAGCTACCGCAAAATGCCAGTTTAAGGACGACCGAGAGATGGAACACCTGACCACGCTCAAGACCCTGCA         >  2:1498728/1‑150                                                                                                                                                         GCGGGCTTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAAGCCCGCGAAGAAGCTACCGCAAAATGCCAGTTTAAGGACGACCGAGAGATGGAACACCTGACCACGCTCAAGACCCTGCA         >  2:1458299/1‑150                                                                                                                                                          CGGGCTTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATCCCTTGGCAGGAGCGGGTAAGCCCGCGAAGAAGCTACCGCAAAATGCCAGTTTAAGGACGACCGAGAGATGGAACACCTGACCACGCTCAAGACCCTGCAC        >  1:2272884/1‑150                                                                                                                                                               TTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAAGCCCGCGAAGAAGCTACCGCAAAATGCCAGTTTAAGGACGACCGAGAGATGGAACACCTGACCACGCTCAAGACCCTGCACATCAT   >  1:2449033/1‑150                                                                                                                                                               TTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAAGCCCGCGAAGAAGCTACCGCAAAATGCCAGT                                                          <  2:129641/95‑1                                                                                                                                                               TTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAAGCCCGCGAAGAAGCTACCGCAAAATGCCAGT                                                          >  1:129641/1‑95                                                                                                                                                                TGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAAGCCCGCGAAGAAGCTACCGCAAAATGCCAGTTTAAGGACGACCGAGAGATGGAACACCTTACCACGCTCAAGACCCTGCACATCATC  <  1:64206/150‑1                                                                                                                                                                TGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAAGCCCGCGAAGAAGCTACCGCAAAATGCCAGTTTAAGGACGACCGAGAGATGGAACACCTGACCACGCTCAAGACCCTGCACATCATC  <  1:105187/150‑1                                                                                                                                                                                                                                                                                                                       TCGCCCTGACGGCGAGCGCGCCAGGTCCAGATCGCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5874455‑5874614 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggcttGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAAGCCCGCGAAGAAGCTACCGCAAAATGCCAGTTTAAGGACGACCGAGAGATGGAACACCTGACCACGCTCAAGACCCTGCACATCATC  <  NC_002947/5874674‑5874526

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.