New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5897799 =	46 (0.490)	13 (0.180)	10/196	NT	28.2%	intergenic (‑143/+91)	PP_5172/PP_5173	hypothetical protein/RND family transporter
	?	NC_002947	5897875 =	30 (0.410)					intergenic (‑219/+15)	PP_5172/PP_5173	hypothetical protein/RND family transporter

GTGGCGACCTTGCTGACGCTGCTGTTCCTGCCGGCGCTGTACGTGGCCTGGTACAAGATCCGCGAGCCGCAGAAACACGCCTGAAGGCCCATATGGCCCCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5897973‑5897799 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attcgcgggtaaacccgctcctaccagGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCTC  >  NC_002947/5897875‑5898021                                                                                                                                                                                                                                                                                                                                    GTGGCGACCTTGCTGACGCTGCTGTTCCTGCCGGCGCGGTACGTGGCCTGGTACAAGATCCGCGAGCCGCAGAAACACGCCTGAAGGCCCATATGGCCCCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTAT                                                                                                                                                                              <  2:298675/150‑1       ACCTTGCTGACGCTGCTGTTCCTGCCGGCGCTGTACGTGGCCTGGTACAAGATCCGCGAGCCGCAGAAACACGCCTGAAGGCCCATATGGCCCCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGG                                                                                                                                                                        <  2:2008998/150‑1       ACCTTGCTGACGCTGCTGTTCCTGCCGGCGCTGTACGTGGCCTGGTACAAGATCCGCGAGCCGCAGAAACACGCCTGAAGGCCCATATGGCCCCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGG                                                                                                                                                                        <  2:1289675/150‑1       ACCTTGCTGACGCTGCTGTTCCTGCCGGCGCTGTACGTGGCCTGGTACAAGATCCGCGAGCCGCAGAAACACGCCTGAAGGCCCATATGGCCCCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGG                                                                                                                                                                        <  1:618881/150‑1         CTTGCTGACGCTGCTGTTCCTGCCGGCGCTGTACGTGGCCTGGTACAAGATCCGCGAGCCGCAGAAACACGCCTGAAGGCCCATATGGCCCCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGG                                                                                                                                                                        <  2:1805426/148‑1         CTTGCTGACGCTGCTGTTCCTGCCGGCGCTGTACGTGGCCTGGTACAAGATCCGCGAGCCGCAGAAACACGCCTGAAGGCCCATATGGCCCCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGG                                                                                                                                                                        >  1:1805426/1‑148            GCTGACGCTGCTGTTCCTGCCGGCGCTGTACGTGGCCTGGTACAAGATCCGCGAGCCGCAGAAACACGCCTGAAGGCCCATATGGCCCCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA                                                                                                                                                                   <  1:1262630/150‑1              TGACGCTGCTGTTCCTGCCGGCGCTGTACGTGGCCTGGTACAAGATCCGCGAGCCGCAGAAACACGCCTGAAGGCCCATATGGCCCCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATGGACCACCGTATTCGCGGGTAAACC                                                                                                                                                                 >  1:1851078/1‑150                ACGCTGCTGTTCCTGCCGGCGCTGTACGTGGCCTGGTACAAGATCCGCGAGCCGCAGAAACACGCCTGAAGGCCCATATGGCCCCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCG                                                                                                                                                               <  1:1622828/150‑1                  GCTGCTGTTCCTGCCGGCGCTGTACGTGGCCTGGTACAAGATCCGCGAGCCGCAGAAACACGCCTGAAGGCCCATATGGCCCCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCT                                                                                                                                                             <  2:779503/150‑1                  GCTGCTGTTCCTGCCGGCGCTGTACGTGGCCTGGTACAAGATCCGCGAGCCGCAGAAACACGCCTGAAGGCCCATATGGCCCCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCT                                                                                                                                                             >  1:2424472/1‑150                  GCTGCTGTTCCTGCCGGCGCTGTACGTGGCCTGGTACAAGATCAGCGAGCCGCAGAAACACGCCGGGAGGCCCATATGGCCCCTGGTAGTAGCGGGATTACCCACGAATGCGAGGGTGCAACGACCACCGTATTCGCGGGTAAAGCCGCT                                                                                                                                                             >  1:1237413/1‑150                         TTCCTGCCGGCGCTGTACGTGGCCTGGTACAAGATCCGCGAGCCGCAGAAACACGCCTGAAGGCCCATATGGCCCCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCA                                                                                                                                                      >  1:1183639/1‑150                                  GCGCTGTACGTGGCCTGGTACAAGATCCGCGAGCCGCAGAAACACGCCTGAAGGCCCATATGGCCCCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTA                                                                                                                                                         >  1:1103517/1‑138                                  GCGCTGTACGTGGCCTGGTACAAGATCCGCGAGCCGCAGAAACACGCCTGAAGGCCCATATGGCCCCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTA                                                                                                                                                         <  2:1103517/138‑1                                       GTACGTGGCCTGGTACAAGATCCGCGAGCCGCAGAAACACGCCTGAAGGCCCATATGGCCCCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCG                                                                                                                                                                         <  2:778544/117‑1                                       GTACGTGGCCTGGTACAAGATCCGCGAGCCGCAGAAACACGCCTGAAGGCCCATATGGCCCCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCG                                                                                                                                                                         >  1:778544/1‑117                                                                                                                      CCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGG                                                                                                                                 <  1:1943325/78‑1                                                                                                                      CCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGG                                                                                                                                 >  2:1943325/1‑78                                                                                                                       CCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCTTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAG                                                          >  1:1875663/1‑148                                                                                                                       CCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCTTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAG                                                          <  2:1875663/148‑1                                                                                                                       CCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGT                                                        >  1:2031496/1‑150                                                                                                                       CCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACA                                                                                       <  2:157920/119‑1                                                                                                                       CCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACA                                                                                       >  1:157920/1‑119                                                                                                                       CCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATC                                                                                                          <  2:740536/100‑1                                                                                                                       CCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATC                                                                                                          >  1:740536/1‑100                                                                                                                       CCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGAGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGT                                                        >  1:1642756/1‑150                                                                                                                       CCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACC                                                                                                                                                                 >  1:1928782/1‑45                                                                                                                       CCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACC                                                                                                                                                                 <  2:1928782/45‑1                                                                                                                                 GATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGGAGCGTCAGCAAGGTCGCCACGA                                                >  2:1213600/1‑148                                                                                                                                 GATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGA                                                <  1:1213600/148‑1                                                                                                                                       GCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGAGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCG                                        <  2:1642756/150‑1                                                                                                                                                      TTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAG                         >  1:2192939/1‑150                                                                                                                                                       gaGCGGGTTTACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGG                        >  1:984487/3‑150                                                                                                                                                       TCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGG                        >  1:373080/1‑150                                                                                                                                                         GCGGGTAAACCCGCTCCTACCAGGGGGCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGGGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATTATACCGCCAATCATGGCGTAGGCC                      >  2:1209222/1‑150                                                                                                                                                         GCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTATGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCC                      >  2:1164752/1‑150                                                                                                                                                          CGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCA                     <  1:2066229/150‑1                                                                                                                                                            GGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATG                   <  2:1468964/150‑1                                                                                                                                                             GTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGG                  >  2:1768285/1‑150                                                                                                                                                                 ACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGAACTTGTACCAGGCCACGTACAGTTGGACAAGGAACAGCAGCGTCAGCAAGGTCGCCACGATCATCCCGACAATCCTGACGTAGGCCATGGGGCC              >  1:1332172/1‑150                                                                                                                                                                  CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCC             >  2:2132326/1‑150                                                                                                                                                                   CCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCC            >  1:2060951/1‑150                                                                                                                                                                   CCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCAACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCC            >  2:1483223/1‑150                                                                                                                                                                   CCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGAGTACGCANGGCCGCNACGATGATCCCTCCAATCATGGCGTAGGCCATGGGGCCCC            <  1:2132326/150‑1                                                                                                                                                                    CGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCA           <  2:2329300/150‑1                                                                                                                                                                     GCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAG                                                                                                 <  2:2120764/63‑1                                                                                                                                                                     GCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAG                                                                                                 >  1:2120764/1‑63                                                                                                                                                                       TCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAA        >  1:1556292/1‑150                                                                                                                                                                       TCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAA        >  2:1015214/1‑150                                                                                                                                                                       TCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCC             >  1:2257470/1‑145                                                                                                                                                                       TCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCC             <  2:2257470/145‑1                                                                                                                                                                         CTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACA      >  2:1870763/1‑150                                                                                                                                                                          TACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCA                                                   <  1:1522527/104‑1                                                                                                                                                                          TACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCA                                                   >  2:1522527/1‑104                                                                                                                                                                             CAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACATACAGCGACGGCAGGAACAGCAGCGTCAGCAAGGTCGCCAAGCTGATCCCGCCAATCATGGGGTAGGCCATGGGGCCCCAGAACACCTC  >  2:123418/1‑150                                                                                                                                                                                                                                                                                                                                    GTGGCGACCTTGCTGACGCTGCTGTTCCTGCCGGCGCTGTACGTGGCCTGGTACAAGATCCGCGAGCCGCAGAAACACGCCTGAAGGCCCATATGGCCCCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5897973‑5897799 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attcgcgggtaaacccgctcctaccagGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCTC  >  NC_002947/5897875‑5898021

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.