| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 6002417 | 109 (1.170) | 8 (0.100) | 7/218 | NT | 7.7% | intergenic (‑61/+85) | amaA/amaB | L‑pipecolate oxidase/L‑piperidine‑6‑carboxylate dehydrogenase |
| ? | NC_002947 | = 6002437 | 96 (1.180) | intergenic (‑81/+65) | amaA/amaB | L‑pipecolate oxidase/L‑piperidine‑6‑carboxylate dehydrogenase | |||||
CATCGGCCTTGTGCTCACCGGCCAGGGCCTGGGCGGCGACGGTCGGTTTGCTGACGTGTTCCCACAAGCATTGTTGACGCAGTTCGGACATGGCCGGCTCCAGCAATTTGTTCTTGTTGGGGCCGCAGGGCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/6002254‑6002417‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccgctcctacagggTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGCCCTGCGGCCCCAACAAGAACAAATTGCTGGAGCCGGCCATGTCCGAACTGCGTCAACAATGCTTGTGGGAACACGTCAGCAAACCGACCGTC < NC_002947/6002437‑6002291 CATCGGCCTTGTGCTCACCGGCCAGGGCCTGGGCGGCGACGGTCGGTTTGCTGACGTGTTCCCACAAGCATTGTTGACGCAGTTCGGACATGGCCGGCTCCAGCAATTTGTTCTTGTTGGGGCCGCAGGGCGGCCCTTTCGCGGGTAAAC < 2:1479906/150‑1 ATCGGCCTTGTGCTCACCGGCCAGGGCCTGGGCGGCGACGGTCGGTTTGCTGACGTGTTCCCACAAGCATTGTTGACGCAGTTCGGACATGGCCGGCTCCAGCAATTTGTTCTTGTTGGGGCCGCAGGGCGGCCCTTTCGCGGGTAAACC > 2:463049/1‑150 ATCGGCCTTGTGCTCACCGGCCAGGGCCTGGGCGGCGACGGTCGGTTTGCTGACGTGTTCCCACAAGCATTGTTGACGCAGTTCGGACATGGCCGGCTCCAGCAATTTGTTCTTGTTGGGGCCGCAGGGCGGCCCTTTCGCGGGTAAACC < 1:2079550/150‑1 TCGGCCTTGTGCTCACCGGCCAGGGCCAAGGCGGCGACGGACGGTTTGCTGACGTGTTCCCACAAGCATTGTTGACGCAGTTCGGACATGGCCGGCACCAGCAATTTGTTCTTGTTGGGGCCGCAGGGCGGCCCTTTCGCGGGTAAACCC > 2:1099753/1‑150 GGCCTTGTGCTCACCGGCCAGGGCCTGGGCGGCGACGGTCGGTTTGCTGACGTGTTCCCACAAGCATTGTTGACGCAGTTCGGACATGGCCGGCTCCAGCAATTTGTTCTTGTTGGGGCCGCAGGGCGGCCCTTTCGCGGGTAAACCCGC > 2:497838/1‑150 TTGTGCTCACCGGCCAGGGCCTGGGCGGCGACGGTCGGTTTGCTGACGTGTTCCCACAAGCATTGTTGACGCAGTTTGGACATGGCCGGCTCCAGCAATTTGTTCTTGTTGGGGCCGCAGGGCGGCCCTTTCGCGGGGAAACCCGCTCCT > 1:1734856/1‑150 TTGTGCTCACCGGCCAGGGCCTGGGCGGCGACGGTCGGTTTGCTGACGTGTTCCCACAAGCATTGTTGACGCAGTTCGGACATGGCCGGCTCCAGCAATTTGTTCTTGTTGGGGCCGCAGGGCGGCCCTTTCGCGGATAAACCCGCTCCT > 2:170868/1‑150 TGTGCTCACCGGCCAGGGCCTGGGCGGCGACGGTCGGTTTGCTGACGTGTTCCCACAAGCATTGTTGACGCAGTTCGGACATGGCCGGCTCCAGCAATTTGTTCTTGTTGGGGCCGCAGGGCGGCCCTTTCGCGGGTAAACCCGCTCCTA < 1:733575/150‑1 GCTCACCGGCCAGGGCCTGGGCGGCGACGGTCGGTTTGCTGACGTGTTCCCACAAGCATTGTTGACGCAGTTCGGACATGGCCGGCTCCAGCAATTTGTTCTTGTTGGGGCCGCAGGGCGGCCCTTTCGCGGGTAAACCCGCTCCTACAG < 2:2236775/150‑1 CTCACCGGCCAGGGCCTGGGCGGCGACGGTCGGTTTGCTGACGTGTTCCCACAAGCATTGTTGACGCAGTTCGGACATGGCCGGCTCCAGCAATTTGTTCTTGTTGGGGCCGCAGGGCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGG < 2:1035967/150‑1 CTCACCGGCCAGGGCCTGGGCGGCGACGGTCGGTTTGCTGACGTGTTCCCACAAGCATTGTTGACGCAGTTCGGACATGGCCGGCTCCAGCAATTTGTTCTTGTTGGGGCCGCAGGGCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGG < 1:611421/150‑1 TCACCGGCCAGGGCCTGGGCGGCGACGGTCGGTTTGCTGACGTGTTCCCACAAGCATTGTTGACGCAGTTCGGACATGGCCGGCTCCAGCAATTTGTTCTTGTTGGGGCCGCAGGGCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGG > 2:2360249/1‑150 TCACCGGCCAGGGCCTGGGCGGCGACGGTCGGTTTGCTGACGTGTTCCCACAAGCATTGTTGACGCAGTTCGGACATGGCCGGCTCCAGCAATTTGTTCTTGTTGGGGCCGCAGGGCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGG > 2:1512218/1‑150 TGGGCGGCGACGGTCGGTTTGCTGACGTGTTCCCACAAGCATTGTTGACGCAGTTCGGACATGGCCGGCTCCAGCAATTTGTTCTTGTTGGGGCCGCAGGGCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGTTCGTCCAAGCGACA > 2:1381712/1‑150 GACGGTCGGTTTGCTGACGTGTTCCCACAAGCATTGTTGACGCAGTTCGGACATGGCCGGCTCCAGCAATTTGTTCTTGTTGGGGCCGCAGGGCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCC < 1:1381712/150‑1 GGTCGGTTTGCTGACGTGTTCCCACAAGCATTGTTGACGCAGTTCGGACATGGCCGGCTCCAGCAATTTGTTCTTGTTGGGGCCGCAGGGCGGCCCTTTCGCGGGTAAACC < 2:1567724/111‑1 GGTCGGTTTGCTGACGTGTTCCCACAAGCATTGTTGACGCAGTTCGGACATGGCCGGCTCCAGCAATTTGTTCTTGTTGGGGCCGCAGGGCGGCCCTTTCGCGGGTAAACC > 1:1567724/1‑111 TTTGCTGACGTGTTCCCACAAGCATTGTTGACGCAGTTCGGACATGGCCGGCTCCAGCAATTTGTTCTTGTTGGGGCCGCAGGGCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGC < 1:463049/150‑1 TGTTCCCACAAGCATTGTTGACGCAGTTCGGACATGGCCGGCTCCAGCAATTTGTTCTTGTTGGGGCCGCAGGGCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTTTACCC < 1:497838/150‑1 GCAGTTCGGACATGGCCGGCTCCAGCAATTTGTTCTTGTTGGGGCCGCAGGGCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCC > 1:1506488/1‑109 GCAGTTCGGACATGGCCGGCTCCAGCAATTTGTTCTTGTTGGGGCCGCAGGGCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCC < 2:1506488/109‑1 TTGTTGGGGCCGCAGGGCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTA > 2:543108/1‑78 TTGTTGGGGCCGCAGGGCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTA < 1:543108/78‑1 CCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGCCCTGCGGCCCCAACAAGAACAAATTGCTGGAGCCGGCCATGTCCGAACTGCGTCAACAATGCTTGTGGGAACACGTCAGC < 2:684654/150‑1 CCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGCCCTGCGGCCCCAACAAGAACAAATTGCTGGAGCCGGCCATGTCCGAACTGCGTCAACAATGCTTGTGGGAACACGTCAGC > 2:688054/1‑150 CCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGCCCTGCGGCCCCAACAAGAACAAATTGCTGGAGCCGGCCATGTCCGAACTGCGTCAACAATGCTTGTGGGAACACGTCAGC > 1:320084/1‑150 CCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGACGACCAAAAATGCCATCAAGAACAAATTGCTGGAGCCGGCCATGTCCGAACTGCGTCAACAATGCTTGTGGGAACACGTCAGC < 2:1901500/150‑1 CCCGCTCCTACAGGGTTCGTCCAAGCGACACCAACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGCCCTGCGGCCCCAACAAGAACAAATTGCTGGAGCCGGCCATGTCCGAACTGCGTCAACAATGCTTGTGGGAACACGTCAGC > 1:490274/1‑150 CCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGCCCTGCGGCCCCAACAAGAACAAATTGCTGGAGCCGGCCATGTCCGAACTGCGTCAACAATGCTTGTGGGAACACGTCAGCA > 2:2239943/1‑150 CCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGCCCTGCGGCCCCAACAAGAACAAATTGCTGGAGCCGGCCATGTCCGAACTGCGTCAACAATGCTTGTGGGAACACGTCAGCA > 1:1010195/1‑150 CGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGCCCTGCGGCCCCAACAAGAACAAATTGCTGGAGCCGGCCATGTCCGAACTGC < 1:561855/119‑1 CGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGCCCTGCGGCCCCAACAAGAACAAATTGCTGGAGCCGGCCATGTCCGAACTGC > 2:561855/1‑119 CTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGCCCTGCGGCCCCAACAAGAACAAATTGCTGGAGCCGGCCATGTCCGAACTGCGTCAACAATGCTTGTGGGAACACGTCAGCAAAC < 2:320084/150‑1 CTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGCCCTGCGGCCCCAACAAGAACAAATTGCTGGAGCCGGCCATGTCCGAACTGCGTCAACAATGCTTGTGGGAACACGTCAGCAAACCGA > 1:1430614/1‑150 TACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGCCCTGCGGCCCCAACAAGAACAAATTGCTGGAGCCGGCCATGTCCGAACTGCGTCAACAATGCTTGTGGGAACACGTCAGCAAACCGAC > 1:588091/1‑150 TACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGCCCTGCGGCCCCAACAAGAACAAATTGCTGGAGCCGGCCATGTCCGAACTGCGTCAACAATGCTTGTGGGAACACGTCAGCAAACCGAC > 1:621682/1‑150 TACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGCCCTGCGGCCCCAACAAGAACAAATTGCTG < 1:660141/91‑1 TACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGCCCTGCGGCCCCAACAAGAACAAATTGCTG > 2:660141/1‑91 ACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGCCCTGCGGCCCCAACACGAACAAATTGCTGCTGCGGGCTATATCCGAACTGCGTTAAGAATTCTTGTGGGAACACGTCAGCAAACCGACC < 2:271958/150‑1 GGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGCCCTGCGGCCCCAACAAGAACAAATTGCTGGAGCCGGCCATGTCCGGACTGCGTCAACAATGCTTGTGGGAACACGTCAGCAAACCGACCGTC < 2:764606/150‑1 CATCGGCCTTGTGCTCACCGGCCAGGGCCTGGGCGGCGACGGTCGGTTTGCTGACGTGTTCCCACAAGCATTGTTGACGCAGTTCGGACATGGCCGGCTCCAGCAATTTGTTCTTGTTGGGGCCGCAGGGCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/6002254‑6002417‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccgctcctacagggTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGCCCTGCGGCCCCAACAAGAACAAATTGCTGGAGCCGGCCATGTCCGAACTGCGTCAACAATGCTTGTGGGAACACGTCAGCAAACCGACCGTC < NC_002947/6002437‑6002291 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |