New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6110579 =	89 (0.950)	5 (0.060)	4/240	NT	5.6%	coding (987/1209 nt)	PP_5361	protein P47K
	?	NC_002947	6110619 =	84 (0.940)					coding (947/1209 nt)	PP_5361	protein P47K

GGACTGGGAAAACGGAAGGCTACTGCGTTCCAAAGGGTTTTTCTGGTTGGCCAGCAAATATCAGGAAGCTGGCAGCTGGTCGCAAGCGGGCGGCATGATGCGCCATGGTCTGGCTGGCCGCTGGTGGCGCTTCGTGCCACGCGAGCAGTGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6110732‑6110579 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccaGCCAGACCATGGCGCATCATGCCGCCCGCTTGCGACCAGCTGCCAGCTTCCTGATATTTGCTGGCCAACCAGAAAAACCCTTTGGAACGCAGTAGCCTTCCGTTTTCCCAGTCCTTGTGGATAAAGTCGTAAAAGCGCTGTGGATGA  >  NC_002947/6110619‑6110765                                                                                                                                                                                                                                                                                                               GGACTGGGAAAACGGAAGGCTACTGCGTTCCAAAGGGTTTTTCTGGTTGGCCAGCAAATATCAGGAAGCTGGCAGCTGGTCGCAAGCGGGCGGCATGATGCGCCATGGTCTGGCTGGCCGCTGGTGGCGCTTCGTGCCACGCGAGCAGTG                                                                                                                                                         <  1:336981/150‑1   ACTGGGAAAACGGAAGGCTACTGCGTTCCAAAGGGTTTTTCTGGTTGGCCAGCAAATATCGGGAAGCTGGCAGCTGGTCGCAAGCGGGCGGCATGATGCGCCATGGTCTGGCTGGCCGCTGGTGGCGCTTCGTGCCACGCGAGCAGTGGC                                                                                                                                                       <  2:2224225/150‑1   ACTGGGAAAACGGAAGGCTACTGCGTTCCAAAGGGTTTTTCTGGTTGGCCAGCAAATATCAGGAAGCTGGCAGCTGGTCGCAAGCGGGCGGCATGATGCGCCATGGTCTGGCTGGCCGCTGGTGGCGCTTCGTGCCACGCGAGCAGTGGC                                                                                                                                                       <  2:2214141/150‑1   ACTGGGAAAACGGAAGGCTACTGCGTTCCAAAGGGTTTTTCTGGTTGGCCAGCAAATATCAGGAAGCTGGCAGCTGGTCGCAAGCGGGCGGCATGATGCGCCATGGTCTGGCTGGCCGCTGGTGGCGCTTCGTGCCACGCGAGCAGTGG                                                                                                                                                        <  1:1867233/149‑1   ACTGGGAAAACGGAAGGCTACTGCGTTCCAAAGGGTTTTTCTGGTTGGCCAGCAAATATCAGGAAGCTGGCAGCTGGTCGCAAGCGGGCGGCATGATGCGCCATGGTCTGGCTGGCCGCTGGTGGCGCTTCGTGCCACGCGAGCAGTGG                                                                                                                                                        >  2:1867233/1‑149           AACGGAAGGCTACTGCGTTCCAAAGGGTTTTTCTGGTTGGCCAGCAAATATCAGGAAGCTGGCAGCTGGTCGCAAGCGGGCGGCATGATGCGCCATGGTCTGGCTGGCCGCTGGTGGCGCTTCGTGCCACGCGAGCAGTGGC                                                                                                                                                       <  1:1566330/142‑1           AACGGAAGGCTACTGCGTTCCAAAGGGTTTTTCTGGTTGGCCAGCAAATATCAGGAAGCTGGCAGCTGGTCGCAAGCGGGCGGCATGATGCGCCATGGTCTGGCTGGCCGCTGGTGGCGCTTCGTGCCACGCGAGCAGTGGC                                                                                                                                                       >  2:1566330/1‑142                                                         AATATCAGGAAGCTGGCAGCTGGTCGCAAGCGGGCGGCATGATGCGCCATGGTCTGGCTGGCCGCTGGTGGCGCTTCGTGCCACGCGAGCAGTGG                                                                                                                                                        <  2:608508/95‑1                                                         AATATCAGGAAGCTGGCAGCTGGTCGCAAGCGGGCGGCATGATGCGCCATGGTCTGGCTGGCCGCTGGTGGCGCTTCGTGCCACGCGAGCAGTGG                                                                                                                                                        >  1:608508/1‑95                                                                                                               TGGCTGGCCGCTGGTGGCGCTTCGTGCCACGCGAGCAGTGGCCAGCCAGACCATGGCGCATCATGCCGCCCGCTTGCGACCAGCTGCCAGCTTCCTGATATTTGCTG                                                                                      >  1:1210361/1‑107                                                                                                               TGGCTGGCCGCTGGTGGCGCTTCGTGCCACGCGAGCAGTGGCCAGCCAGACCATGGCGCATCATGCCGCCCGCTTGCGACCAGCTGCCAGCTTCCTGATATTTGCTG                                                                                      <  2:1210361/107‑1                                                                                                                GGCTGGCCGCTGGTGGCGCTTCGTGCCACGCGAGCAGTGGCCAGCCAGACCATGGCGCATCATGCCGCCCGCTTGCGACCAGCTGCCAGCTTCCTGATATTTGCTGGCCAACCAGAAAAACCCTTTGGAACGCAGTAGCCTTCCGTTTTC                                          >  2:1008605/1‑150                                                                                                                   TGGCCGCTGGTGGCGCTTCGTGCCACGCGAGCAGTGGCCAGCCAGACCATGGCGCATCATGCCGCCCGCTTGCGACCAGCTGCCAGCTTCCTGATATTTGCTGGCCAACCAGAAAAACCCTTTGGAACGCAGTAGCCTTCCGTTTTCCCA                                       >  2:2034080/1‑150                                                                                                                   TGGCCGCTGGTGGCGCTTCGTGCCAC‑‑‑‑‑CAGCGGCCAGCCAGACCATGGCGCATCATGCCGCCCGCTTGCGCAGAGCAGCCAGCTTCCTGATATTTGCTGGCCAACCTTAAAAACCCTTTGGAACGCAGTAGCCTTCCGTTTTCCCAGTCCT                                  >  1:535423/1‑150                                                                                                                                                        CCAGCCAGACCATGGCGCATCATGCCGCCCGCTTGCGACCAGCTGCCAGCTTCCTGATATTTGCTGGCCAACCAGAAAAACCCTTTGGAACGCAGTAGCCTTCCGTTTTCCCAGTCCTTGTGGATAAAGTCGTAAAAGCGCTGTGGATGA  >  1:1258470/1‑150                                                                                                                                                          AGCCAGACCATGGCGCATCATGCCGCCCGCTTGCGACCAGCTGCCAGCTTCCTGATATTTGCTGGCCAACCAGAAAAACCCTTTGGAACGCAGTAGCCTTCCGTTTTCCCAGTCCTTGTGGATAAAGTCGTAAAAGC             <  2:1465620/137‑1                                                                                                                                                          AGCCAGACCATGGCGCATCATGCCGCCCGCTTGCGACCAGCTGCCAGCTTCCTGATATTTGCTGGCCAACCAGAAAAACCCTTTGGAACGCAGTAGCCTTCCGTTTTCCCAGTCCTTGTGGATAAAGTCGTAAAAGC             >  1:1465620/1‑137                                                                                                                                                                                                                                                                                                               GGACTGGGAAAACGGAAGGCTACTGCGTTCCAAAGGGTTTTTCTGGTTGGCCAGCAAATATCAGGAAGCTGGCAGCTGGTCGCAAGCGGGCGGCATGATGCGCCATGGTCTGGCTGGCCGCTGGTGGCGCTTCGTGCCACGCGAGCAGTGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6110732‑6110579 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccaGCCAGACCATGGCGCATCATGCCGCCCGCTTGCGACCAGCTGCCAGCTTCCTGATATTTGCTGGCCAACCAGAAAAACCCTTTGGAACGCAGTAGCCTTCCGTTTTCCCAGTCCTTGTGGATAAAGTCGTAAAAGCGCTGTGGATGA  >  NC_002947/6110619‑6110765

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.