New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6166392 =	196 (2.100)	7 (0.080)	7/236	NT	3.6%	intergenic (‑95/‑585)	PP_5406/PP_5407	transposase/TnsD‑like transposition protein
	?	NC_002947	6166419 =	186 (2.110)					intergenic (‑122/‑558)	PP_5406/PP_5407	transposase/TnsD‑like transposition protein
Rejected: Frequency below/above cutoff threshold.

ACAAAGGCCCAAGTGCGACCTTGGGCCCTTGTGGATAAGTCAGAAAAGGCACCTGACTCCTCCATTGTCTATCCCTTGCATGTGAAACGTCAAGTTTCGCACGGATTCGCTCATCCACAAGAATCTCCGCGTTATCCACAACCGGAAACGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6166544‑6166392 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacgcggAGATTCTTGTGGATGAGCGAATCCGTGCGAAACTTGACGTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAAGGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTC  >  NC_002947/6166419‑6166566                                                                                                                                                                                                                                                                                                               ACAAAGGCCCAAGTGCGACCTTGGGCCCTTGTGGATAAGTCAGAAAAGGCACCTGACTCCTCCATTGTCTATCCCTTGCATGTGAAACGTCAAGTTTCGCACGGATTCGCTCATCCACAAGAATCTCCGCGTTATCCACAACCGGAAACG                                                                                                                                                         >  2:2329019/1‑150  CAAAGGCCCAAGTGTGACCTTGGGCCCTTGTGGATAAGTCAGAAAAGGCACCTGACTCCTCCATTGTCTATCCCTTGCATGTGAAACGTCAAGTTTCGCACGGATTCGCTCATCCACAAGAAGCTCCGCGTTATCCACAACCGGAAACGC                                                                                                                                                        <  2:184587/150‑1  CAAAGGCCCAAGTGCGACCTTGGGCCCTTGTGGATAAGTCAGAAAAGGCACCTGACTCCTCCATTGTCTATCCCTTGCATGTGAAACGTCAAGTTTCGCACGGATTCGCTCATCCACAAGAATCTCCGCGTTATCCACAACCGGAAACGC                                                                                                                                                        >  1:1196023/1‑150   AAAGGCCCAAGTGCGACCTTGGGCCCTTGTGGATAAGTCAGAAAAGGCACCTGGCTCCTCCATTGTCTATCCCTTGCATGTGAAACGTCAAGTTTCGCACGGATTCGCTCATCCACAAGAATCTCCGCGTTATCCACAACCGGAAACGCG                                                                                                                                                       >  1:1238985/1‑150   AAAGGCCCAAGTGCGACCTTGGGCCCTTGTGGATAAGTCAGAAAAGGCACCTGACTCCTCCATTGTCTATCCCTTGCATGTGAAACGTCAAGTTTCGCACGGATTCGCTCATCCACAAGAATCTCCGCGTTATCCACAACCGGAAACGCG                                                                                                                                                       >  2:71410/1‑150   AAAGGCCCAAGTGCGACCTTGGGCCCTTGTGGATAAGTCAGAAAAGGCACCTGACTCCTCCATTGTCTATCCCTTGCATGTGAAACGTCAAGTTTCGCACGGATTCGCTCATCCACAAGAATCTCCGCGTTATCCACAACCGGAAACGCG                                                                                                                                                       >  1:470249/1‑150   AAAGGCCCAAGTGCGACCTTGGGCCCTTGTGGATAAGTCAGAAAAGGCACCTGACTCCTCCATTGTCTATCCCTTGCATGTGAAACGTCAAGTTTCGCACGCATCCGCTCATCCACAAGAATCTCCGCGTTATCCACAACCGGAAACGCG                                                                                                                                                       >  1:856028/1‑150        cgCAAGTGCGACCTTGGGCCCTTGTGGATAAGCCAGCAAAGGCACCTGACTCCTCCATTGTCTATCCCTTGCATGTGAAACGTCAAGTTTCGCACGGATTCGCTCATCCACAAGAATCTCCGCGTTATCCACAACCGGACACGCGGctac                                                                                                                                                  <  2:821107/148‑5                                                     CTGACTCCTCCATTGTCTATCCCTTGCATGTGAAACGTCAAGTTTCGCACGGATTCGCTCATCCACAAGAATCTCCGCGTTATCCACAACCGGAAACGCGG                                                                                                                                                      >  2:2062592/1‑101                                                     CTGACTCCTCCATTGTCTATCCCTTGCATGTGAAACGTCAAGTTTCGCACGGATTCGCTCATCCACAAGAATCTCCGCGTTATCCACAACCGGAAACGCGG                                                                                                                                                      <  1:2062592/101‑1                                                             TCCATTGTCTATCCCTTGCATGTGAAACGTCAAGTTTCGCACGGATTCGCTCATCCACAAGAATCTCCGCGTTATCCACAACCGGAAACGCG                                                                                                                                                       >  2:1645366/1‑92                                                             TCCATTGTCTATCCCTTGCATGTGAAACGTCAAGTTTCGCACGGATTCGCTCATCCACAAGAATCTCCGCGTTATCCACAACCGGAAACGCG                                                                                                                                                       <  1:1645366/92‑1                                                                                                                   CCACAAGAATCTCCGCGTTATCCACAACCGGAAACGCGGAGATTCTTGTGGATGAGCGAATCCGTGCGAAACTGGACGTGTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAAGGTCG                                       >  2:459977/1‑150                                                                                                                         GAATCTCCGCGTTATCCACAACCGGAAACGCGGAGATTCTTGTGGATGAGCGAATCCGTGCGAAACTTGACGTTTCACATGCAAGGGATAGACAA                                                                                        >  1:233885/1‑95                                                                                                                         GAATCTCCGCGTTATCCACAACCGGAAACGCGGAGATTCTTGTGGATGAGCGAATCCGTGCGAAACTTGACGTTTCACATGCAAGGGATAGACAA                                                                                        <  2:233885/95‑1                                                                                                                            TCTCCGCGTTATCCACAACCGGAAACGCGGAGATTCTTGTGGATGAGCGAATCCGTGCGAAACTTGACGTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGAC                                                              >  1:1839508/1‑118                                                                                                                            TCTCCGCGTTATCCACAACCGGAAACGCGGAGATTCTTGTGGATGAGCGAATCCGTGCGAAACTTGACGTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGAC                                                              <  2:1839508/118‑1                                                                                                                               CCGCGTTATCCACAACCGGAAACGCGGAGATTCTTGTGGATGAGCGAATCCGTGCGAAACTTGACGTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTT                                                                     >  2:860699/1‑108                                                                                                                               CCGCGTTATCCACAACCGGAAACGCGGAGATTCTTGTGGATGAGCGAATCCGTGCGAAACTTGACGTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTT                                                                     <  1:860699/108‑1                                                                                                                                                   AACGCGGAGATTCTTGTGGATGAGCGAATCCGTGCGAAACTTGACGTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAAGGTCGCACTTGG                                <  2:1292087/125‑1                                                                                                                                                   AACGCGGAGATTCTTGTGGATGAGCGAATCCGTGCGAAACTTGACGTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAAGGTCGCACTTGG                                >  1:1292087/1‑125                                                                                                                                                      GCGGAGATTCTTGTGGATGAGCGAATCCGTGCGAAACTTGACGTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAAGGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTC    >  1:1991923/1‑150                                                                                                                                                      GCGGAGATTCTTGTGGATGAGCGAATCCGTGCGAAACTTGACGTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAG                                                   >  2:2102105/1‑103                                                                                                                                                      GCGGAGATTCTTGTGGATGAGCGAATCCGTGCGAAACTTGACGTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAG                                                   <  1:2102105/103‑1                                                                                                                                                      GCGGAGATTCTTGTGGATGAGCGAATCCGTGCGAAACTTGACGTTTCACATGCAAGGGATAGACAATGGA                                                                                    <  2:1088255/70‑1                                                                                                                                                      GCGGAGATTCTTGTGGATGAGCGAATCCGTGCGAAACTTGACGTTTCACATGCAAGGGATAGACAATGGA                                                                                    >  1:1088255/1‑70                                                                                                                                                        GGAGATTCTTGTGGATGAGCGAATCCGTGCGAAACTTGACGTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAAGGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGTGCTCTC  >  2:156989/1‑150                                                                                                                                                        GGAGATTCTTGTGGATGAGCGAATCCGTGCGAAACTTGACGTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAAGGTCGCACTTGGGCCTTTGTCTATCT                  >  2:1299843/1‑134                                                                                                                                                        GGAGATTCTTGTGGATGAGCGAATCCGTGCGAAACTTGACGTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAAGGTCGCACTTGGGCCTTTGTCTATCT                  <  1:1299843/134‑1                                                                                                                                                                                                                                                                                                               ACAAAGGCCCAAGTGCGACCTTGGGCCCTTGTGGATAAGTCAGAAAAGGCACCTGACTCCTCCATTGTCTATCCCTTGCATGTGAAACGTCAAGTTTCGCACGGATTCGCTCATCCACAAGAATCTCCGCGTTATCCACAACCGGAAACGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6166544‑6166392 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacgcggAGATTCTTGTGGATGAGCGAATCCGTGCGAAACTTGACGTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAAGGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTC  >  NC_002947/6166419‑6166566

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.