New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2063227	41 (0.440)	15 (0.200)	10/200	NT	28.4%	intergenic (+41/‑166)	PP_1838/PP_1839	membrane protein/hypothetical protein
	?	NC_002947	= 2063271	43 (0.580)					intergenic (+85/‑122)	PP_1838/PP_1839	membrane protein/hypothetical protein

AAGCCCGGACCAGCCGGAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGA  >  NC_002947/2063078‑2063375                                                                                                                                                      |                                                                                                                                                     aaGCCCGGACCAGCCGGAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTC                                                                                                                                                      <  1:2281138‑M1/150‑1 (MQ=255) aaGCCCGGACCAGCCGGAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTC                                                                                                                                                      >  2:2398560‑M1/1‑150 (MQ=255)     ccGGACCAGCCGGAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCcac                                                                                                                                                  <  2:2127020/150‑1 (MQ=255)               cGGAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGAAGCGTTGCGGCCCAATCGCGGTCTTGCCCGCTCCCACAGGCATTGca                                                                                                                                        >  2:2092270/1‑150 (MQ=255)                  aaaTGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGcacat                                                                                                                                     <  1:2398560/150‑2 (MQ=255)                    aTGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAggg                                                                                                                                   <  1:1030705/150‑1 (MQ=255)                     tGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGt                                                                                                                                  <  2:2400105/150‑1 (MQ=255)                        tCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCgcacaggacctgcacaaggtcc                                                                                                                                >  2:36438‑M1/1‑127 (MQ=255)                        tCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCgcacaggacctgcacaaggtcc                                                                                                                                <  1:36438‑M1/149‑23 (MQ=255)                        tCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCccacaggacctgcacaaggtccg                                                                                                                               >  1:151598‑M1/1‑127 (MQ=255)                        tCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCg                                                                                                                               <  1:2092270/150‑1 (MQ=255)                        tCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCg                                                                                                                               >  1:1296527/1‑150 (MQ=255)                           agaagCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGAc                                                                                                                            >  1:388929/1‑150 (MQ=255)                            gaagCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGa                                                                                                                             <  2:2073643/148‑1 (MQ=255)                            gaagCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGa                                                                                                                             >  1:2073643/1‑148 (MQ=255)                            gaagCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGAcc                                                                                                                           >  1:1623445/1‑150 (MQ=255)                              agCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCccacaggacctgcacaaggtccgaaccct                                                                                                                         <  2:151598‑M1/150‑30 (MQ=255)                              agCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCccacaggacctgcacaaggtccgaaccct                                                                                                                         <  1:2165650‑M1/150‑30 (MQ=255)                                cTGTAACCGTACATCCAGACCGCGACCAAGAGCCTGCTCGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTTGCGCCCTTGTCCGCTCgcacagcacctgcacaaggtccgaaccctgt                                                                                                                       <  2:587509‑M1/150‑32 (MQ=255)                                cTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTtgt                                                                                                                       >  1:1899820/1‑150 (MQ=255)                                    aaGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAg                                                                                                                   <  1:2148432/150‑1 (MQ=255)                                     aGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAgg                                                                                                                  >  1:2234209/1‑150 (MQ=255)                                     aGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACAGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCCTGCCCGCTCCCACCAGCATTGCACAGGGTTTGGACCTTGTCCAgg                                                                                                                  >  1:2234317/1‑150 (MQ=255)                                      gCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGt                                                                                                                 <  2:752396/150‑1 (MQ=255)                                           tatCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCtgt                                                                                                            <  1:2056186/150‑1 (MQ=255)                                            atCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCccacaggacctgcacaaggtccgaaccctgtgcaatgcctgtt                                                                                                           <  1:1047385‑M1/150‑44 (MQ=255)                                             tCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGc                                                                                                          >  2:383820/1‑150 (MQ=255)                                             tCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGc                                                                                                          <  2:2175488/150‑1 (MQ=255)                                              ccAGACCGCGACCAAGAGCCTGCTGGATAACAGCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAg                                                                                                                   >  2:1341867/1‑140 (MQ=255)                                              ccAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAg                                                                                                                   <  1:1341867/140‑1 (MQ=255)                                               cAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCga                                                                                                        >  2:1899820‑M2/1‑148 (MQ=255)                                                aGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGgag                                                                                                       <  2:252556‑M2/150‑4 (MQ=255)                                                   ccGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGgagcgg                                                                                                    >  1:252556‑M2/1‑144 (MQ=255)                                                   ccGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGgagcgg                                                                                                    >  1:1046565‑M2/1‑144 (MQ=255)                                                    cgcgACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCgagcggg                                                                                                   <  2:1798747‑M2/150‑8 (MQ=255)                                                       gACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGTGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCTCAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCgagcgggcaa                                                                                                >  2:253323‑M2/1‑140 (MQ=255)                                                       gACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCgagcgggcaa                                                                                                >  1:383820‑M2/1‑140 (MQ=255)                                                          cAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCgcacaggacctgcacaaggtccgaaccctgtgcaatgcctgtgggagcgg                                                                                                    <  1:2260733‑M1/143‑51 (MQ=255)                                                          cAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCgcacaggacctgcacaaggtccgaaccctgtgcaatgcctgtgggagcgg                                                                                                    >  1:1277993‑M1/1‑93 (MQ=255)                                                          cAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCgcacaggacctgcacaaggtccgaaccctgtgcaatgcctgtgggagcgg                                                                                                    >  2:2260733‑M1/1‑93 (MQ=255)                                                          cAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCgcacaggacctgcacaaggtccgaaccctgtgcaatgcctgtgggagcgg                                                                                                    <  2:1277993‑M1/143‑51 (MQ=255)                                                                     tgGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCgagcgggcaagcccgcgaatgggc                                                                                  >  2:1296527‑M2/1‑126 (MQ=255)                                                                       gATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCgcacaggacctgcacaaggtccgaaccctgtgcaatgc                                                                                                                >  1:2145223‑M1/1‑80 (MQ=255)                                                                       gATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCgcacaggacctgcacaaggtccgaaccctgtgcaatgc                                                                                                                <  2:2145223‑M1/118‑39 (MQ=255)                                                                                           gCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCt                                                                                                              >  2:1193173/1‑100 (MQ=255)                                                                                           gCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCt                                                                                                              <  1:1193173/100‑1 (MQ=255)                                                                                             aCGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGGCCCGCACAATTTTCCCGGACTGaa                                                          <  2:1623445/150‑1 (MQ=255)                                                                                                  acacCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTa                                                     >  1:2074658/1‑150 (MQ=255)                                                                                                    acCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCgagcgggcaagcccgcgaatg                                                                                     <  1:1579753‑M2/116‑22 (MQ=255)                                                                                                    acCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCgagcgggcaagcccgcgaatg                                                                                     >  2:1579753‑M2/1‑95 (MQ=255)                                                                                                    acCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATc                                                   >  1:91764/1‑150 (MQ=255)                                                                                                    acCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATc                                                   <  1:1798747/150‑1 (MQ=255)                                                                                                      cGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCggacaggacctgcacaaggtccgaaccct                                                                                                                         >  2:1327299‑M1/1‑49 (MQ=255)                                                                                                      cGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCgcacaggacctgcacaaggtccgaaccct                                                                                                                         <  1:1327299‑M1/78‑30 (MQ=255)                                                                                                                    gCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAg                                   <  2:91764/150‑1 (MQ=255)                                                                                                                               gCCCATTCGCGGGCTTGCCCGCTCgcacaggacctgcacaaggtccgaaccctgtgcaatgcctgtgggagcgggcaagcccgcgaatgggccgcaacgcggccccggtttacttcggtgtgccgtgcaccacgccggcggtgttatcca                        >  2:1296527‑M1/1‑24 (MQ=255)                                                                                                                                cccATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTTTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTa                                                     >  1:80041/1‑120 (MQ=255)                                                                                                                                cccATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTa                                                     <  2:80041/120‑1 (MQ=255)                                                                                                                                 ccATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATc                      >  2:2393680/1‑150 (MQ=255)                                                                                                                                 ccATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATc                      >  2:635390/1‑150 (MQ=255)                                                                                                                                  cATTCGCGGGCTTGCCCGCTCgcacaggacctgcacaaggtccgaaccctgtgcaatgcctgtgggagcgggcaagcccgcgaatgggccgcaacgcggccccggtttacttcggt                                                       >  2:1579753‑M1/1‑21 (MQ=255)                                                                                                                                  cATTCGCGGGCTTGCCCGCTCgcacaggacctgcacaaggtccgaaccctgtgcaatgcctgtgggagcgggcaagcccgcgaatgggccgcaacgcggccccggtttacttcggt                                                       <  1:1579753‑M1/116‑96 (MQ=255)                                                                                                                                  cATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGGGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATca                     <  2:388929/150‑1 (MQ=255)                                                                                                                                   aTTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCtgt                                                                                                            <  2:1336937/62‑1 (MQ=255)                                                                                                                                   aTTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCtgt                                                                                                            >  1:1336937/1‑62 (MQ=255)                                                                                                                                       gcgGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCacacac                >  1:1203296/1‑150 (MQ=255)                                                                                                                                           gCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTgg            >  1:98843/1‑150 (MQ=255)                                                                                                                                             ttGCCCGCTCgcacaggacctgcacaaggtccgaaccctgtgcaatgcctgtgggagcgggcaagcccgcgaatgggccgcaacgcggccccggtttacttcggtgtgccgtgcaccacgccggcggtgttatccagcaggctcttggtc          >  1:383820‑M1/1‑10 (MQ=255)                                                                                                                                             ttGCCCGCTCgcacaggacctgcacaaggtccgaaccctgtgcaatgcctgagggagcgggcaagcccgcgaatgggccgcaacgcggcaccggtttacttcggtgtgccgtgcaccacgccggcggtgttatccagcaggctcttggtc          >  2:253323‑M1/1‑10 (MQ=255)                                                                                                                                             ttGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCCCTGCACCATTTTCCAGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGgtg          >  1:1475355/1‑150 (MQ=14)                                                                                                                                                cccGCTCgcacaggacctgcacaaggtccgaaccctgtgcaatgcctgtgggagcgggcaagcccgcgaatgggccgcaacgcggccccggtttacttcggtgtgccgtgcaccacgccggcggtgttatccagcaggctcttggtcgcg       <  2:1798747‑M1/150‑144 (MQ=255)                                                                                                                                                cccGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTc       >  1:967916/1‑150 (MQ=255)                                                                                                                                                 ccGCTCccacaggcattgcacagggttcggaccttgtgcaggtcctgtgcgagcgggcaagcccgcgaatgggccgcaacgcggccccggtttacttcggtgtgccgtgcaccacgccggcggtgttatccagcaggctcttggtcgcgg      >  1:252556‑M1/1‑6 (MQ=255)                                                                                                                                                 ccGCTCccacaggcattgcacagggttcggaccttgtgcaggtcctgtgcgagcgggcaagcccgcgaatgggccgcaacgcggccccggtttacttcggtgtgccgtgcaccacgccggcggtgttatccagcaggctcttggtcgcgg      >  1:1046565‑M1/1‑6 (MQ=255)                                                                                                                                                 ccGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCgagcgggcaagcccgcgaatgggccgcaacgcggccccggtttacttcggtgtgccgtgcaccacgccggcggtgttatccagcaggctcttg             >  2:2260733‑M2/1‑50 (MQ=255)                                                                                                                                                 ccGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCgagcgggcaagcccgcgaatgggccgcaacgcggccccggtttacttcggtgtgccgtgcaccacgccggcggtgttatccagcaggctcttg             <  2:1277993‑M2/143‑94 (MQ=255)                                                                                                                                                 ccGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCgagcgggcaagcccgcgaatgggccgcaacgcggccccggtttacttcggtgtgccgtgcaccacgccggcggtgttatccagcaggctcttg             <  1:2260733‑M2/143‑94 (MQ=255)                                                                                                                                                 ccGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCgagcgggcaagcccgcgaatgggccgcaacgcggccccggtttacttcggtgtgccgtgcaccacgccggcggtgttatccagcaggctcttg             >  1:1277993‑M2/1‑50 (MQ=255)                                                                                                                                                 ccGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCa                            >  1:636291/1‑128 (MQ=255)                                                                                                                                                 ccGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCa                            <  2:636291/128‑1 (MQ=255)                                                                                                                                                 ccGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCg      >  1:1443389/1‑150 (MQ=255)                                                                                                                                                   gCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGtt    <  2:1443389/150‑1 (MQ=255)                                                                                                                                                    cTCccacaggcattgcacagggttcggaccttgtgcaggtcctgtgcgagcgggcaagcccgcgaatgggccgcaacgcggccccggtttacttcggtgtgccgtgcaccacgccggcggtgttatccagcaggctcttggtcgcggtct   <  2:252556‑M1/150‑148 (MQ=255)                                                                                                                                                     tCgcacaggacctgcacaaggtccgaaccctgtgcaatgcctgtgggagcgggcaagcccgcgaatgggccgcaacgcggccccggtttacttcggtgtgccgtgcaccacgccggcggtgttatccagcaggctcttggtcgcggtctg  >  2:1899820‑M1/1‑2 (MQ=255)                                                                                                                                                      |                                                                                                                                                     AAGCCCGGACCAGCCGGAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGA  >  NC_002947/2063078‑2063375

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.