New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 3826400 = | NA (NA) | 8 (0.090) | 13/238 | NT | NA | intergenic (‑312/+291) | ptxS/PP_3381 | 2‑ketogluconate utilization repressor/transposase |
? | NC_002947 | 3826414 = | NA (NA) | intergenic (‑326/+277) | ptxS/PP_3381 | 2‑ketogluconate utilization repressor/transposase |
GGGATTAGGGATGGCACAGGCTTCGCCCGTGTTCGCGGGTAAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGA > NC_002947/3826256‑3826433 | gggatTAGGGATGGCACAGGCTTCGCCCGTGTTCGCGGGTAAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGc > 2:1562788/1‑150 (MQ=255) gggatTAGGGATGGCACAGGCTTCGCCCGTGTTCGCGGGTAAACCCGCTTCTATCAAACAAAAGATAACCCACTGCAGCGCAGGGAAAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGc > 1:2253010/1‑150 (MQ=17) ttAGGGATGGCACAGGCTTCGCCCGTGTTCGCGGGTAAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGc > 1:1803648/1‑150 (MQ=255) gATGGCACAGGCTTCGCCCGTGTTCGCGGGTAAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGc < 1:1229837/150‑1 (MQ=255) gATGGCACAGGCTTCGCCCGTGTTCGCGGGTAAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGc < 1:2395373/150‑1 (MQ=255) ggCTTCGCCCGTGTTCGCGGGTAAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGa < 1:1926378/150‑1 (MQ=40) cTTCGCCCGTGTTCGCGGGTAAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGAtt > 2:141575/1‑150 (MQ=38) ccGTGTTCGCGGGTAAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACACGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGCGACTAACGcc > 2:84921/1‑150 (MQ=16) gtgtTCGCGGGTAAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGa < 2:1654211/150‑1 (MQ=32) | GGGATTAGGGATGGCACAGGCTTCGCCCGTGTTCGCGGGTAAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGA > NC_002947/3826256‑3826433 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |