New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3826400 =	NA (NA)	8 (0.090)	13/238	NT	NA	intergenic (‑312/+291)	ptxS/PP_3381	2‑ketogluconate utilization repressor/transposase
	?	NC_002947	3826414 =	NA (NA)					intergenic (‑326/+277)	ptxS/PP_3381	2‑ketogluconate utilization repressor/transposase

GGGATTAGGGATGGCACAGGCTTCGCCCGTGTTCGCGGGTAAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGA  >  NC_002947/3826256‑3826433                                                                                                                                                 |                                  gggatTAGGGATGGCACAGGCTTCGCCCGTGTTCGCGGGTAAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGc                              >  2:1562788/1‑150 (MQ=255) gggatTAGGGATGGCACAGGCTTCGCCCGTGTTCGCGGGTAAACCCGCTTCTATCAAACAAAAGATAACCCACTGCAGCGCAGGGAAAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGc                              >  1:2253010/1‑150 (MQ=17)     ttAGGGATGGCACAGGCTTCGCCCGTGTTCGCGGGTAAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGc                          >  1:1803648/1‑150 (MQ=255)          gATGGCACAGGCTTCGCCCGTGTTCGCGGGTAAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGc                     <  1:1229837/150‑1 (MQ=255)          gATGGCACAGGCTTCGCCCGTGTTCGCGGGTAAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGc                     <  1:2395373/150‑1 (MQ=255)                   ggCTTCGCCCGTGTTCGCGGGTAAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGa            <  1:1926378/150‑1 (MQ=40)                     cTTCGCCCGTGTTCGCGGGTAAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGAtt          >  2:141575/1‑150 (MQ=38)                           ccGTGTTCGCGGGTAAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACACGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGCGACTAACGcc    >  2:84921/1‑150 (MQ=16)                             gtgtTCGCGGGTAAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGa  <  2:1654211/150‑1 (MQ=32)                                                                                                                                                 |                                  GGGATTAGGGATGGCACAGGCTTCGCCCGTGTTCGCGGGTAAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGA  >  NC_002947/3826256‑3826433

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.