New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 5036635NA (NA)3 (0.030) 3/232 NT NA coding (78/336 nt) PP_4442 transposase
?NC_002947 = 5036691 NA (NA)coding (134/336 nt) PP_4442 transposase

GAGGGCTGCGCGCAATTTATCCGGGCTGTCGCTCAATGATCCGCATCGATGCGATCTGGCTGGCCACCGAGCCGATGGATATGCGCGCCGGCACCGAAACGGCATTGGCCCGGGTGATCGCGGTGTTCGGTGCGGCGAAGCCGCACTGCGCTTATCTGTTCGCCAATCGCCGGGCCAACCGGATGAAGGTGCTGGTGCACGACGGCGTGGGCGTCTGGCTTGCAGCGCGACGACTGAATCAA  >  NC_002947/5036523‑5036764
                                                                                                                |                                                                                                                                 
gaaggCTGCGCGCAATTTAGCCGGGCTGTCGCTCAATGATCCGCATCGATGCGATCTGGCTCGCCACCGAGCCGATAGATATGCGCGCCGGCACCGAAACGGCATTGGCCCGGGTGATCGCGGTGTTCGGTGCGGCTTCGCCGCAccgaa                                                                                              <  2:1190532/147‑5 (MQ=1)
                                                                                            acagAAACGGCATTGGCCCGGGTGATCGCGGTGTTCGGTGCGGCGAAGCCGCACTGCGCTTATCTGTTCGCCAATCGCCGGGCCAACCGGATGGAGGTGCTGGTGCACGACGGCGTGGGCGTCTGGCTTGCAGCGCGACGACTGAATCaa  >  1:614618/4‑150 (MQ=1)
                                                                                                                |                                                                                                                                 
GAGGGCTGCGCGCAATTTATCCGGGCTGTCGCTCAATGATCCGCATCGATGCGATCTGGCTGGCCACCGAGCCGATGGATATGCGCGCCGGCACCGAAACGGCATTGGCCCGGGTGATCGCGGTGTTCGGTGCGGCGAAGCCGCACTGCGCTTATCTGTTCGCCAATCGCCGGGCCAACCGGATGAAGGTGCTGGTGCACGACGGCGTGGGCGTCTGGCTTGCAGCGCGACGACTGAATCAA  >  NC_002947/5036523‑5036764

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.