New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1531811	57 (0.610)	7 (0.090)	7/202	NT	14.4%	coding (107/630 nt)	PP_1344	hypothetical protein
	?	NC_002947	= 1531859	37 (0.490)					coding (59/630 nt)	PP_1344	hypothetical protein

TGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAACAGGCCCCTGCCAAAACGCTGTATCAGCATCGTGGA  >  NC_002947/1531714‑1531995                                                                                                                                                  |                                                                                                                                         tGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCAcccg                                                                                                                                      >  2:1193452‑M2/1‑146 (MQ=255)     tGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCAcccgcgaa                                                                                                                                  >  1:444417‑M2/1‑142 (MQ=255)     tGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCAcccgcgaa                                                                                                                                  >  1:443951‑M2/1‑142 (MQ=255)     ggggcGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCAcccgcgaa                                                                                                                                  >  1:1690889‑M2/2‑142 (MQ=255)       ggCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCAcccgcgaaga                                                                                                                                >  2:386245‑M2/1‑140 (MQ=255)             ggAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGGCGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCAcccgcgaagaggccgg                                                                                                                          >  2:1482783‑M2/1‑134 (MQ=255)                                                           aGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCAcccgcgaaga                                                                                                                                >  1:1978631‑M2/1‑88 (MQ=255)                                                           aGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCAcccgcgaaga                                                                                                                                <  2:1978631‑M2/98‑11 (MQ=255)                                                                 aCATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCAcccgcgaaga                                                                                                                                >  1:925923‑M2/1‑82 (MQ=255)                                                                 aCATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCAcccgcgaaga                                                                                                                                <  2:925923‑M2/92‑11 (MQ=255)                                                                               tgtgCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGa                                                        >  1:651764/1‑150 (MQ=255)                                                                                    cGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAATACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATg                                                   >  2:958632/1‑150 (MQ=255)                                                                                     ggCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGAt                                                                                         <  1:1201845/111‑1 (MQ=255)                                                                                     ggCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGAt                                                                                         >  2:1201845/1‑111 (MQ=255)                                                                                     ggCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGc                                                  >  1:2236243/1‑150 (MQ=255)                                                                                         tctTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCAcccgcgaagaggccggcacaggcaacggagatgttagactgtgcccacgtcacttcacgcgtacccccatggcctacaaaccctcccccgcc                                              <  1:1666329‑M2/150‑93 (MQ=255)                                                                                         tctTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCa                                                            >  2:182013/1‑136 (MQ=255)                                                                                         tctTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCa                                                            <  1:182013/136‑1 (MQ=255)                                                                                         tctTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCt                                              >  1:2392932/1‑150 (MQ=255)                                                                                         tctTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCt                                              >  2:1777903/1‑150 (MQ=255)                                                                                          ctTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTa                                             <  2:651764/150‑1 (MQ=255)                                                                                           ttCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCCcccgcgaagaggccggcacaggcaacggagatgttagactgtgcccacgtcacttcacgcgtacccccatggcctacaaa                                                          <  2:831851‑M2/136‑81 (MQ=255)                                                                                           ttCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCCcccgcgaagaggccggcacaggcaacggagatgttagactgtgcccacgtcacttcacgcgtacccccatggcctacaaa                                                          >  1:831851‑M2/1‑56 (MQ=255)                                                                                           ttCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCtt                                                                   <  1:2224534/127‑1 (MQ=255)                                                                                           ttCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCtt                                                                   >  2:2224534/1‑127 (MQ=255)                                                                                                 ggggAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAAt                                                    >  2:894448/1‑136 (MQ=255)                                                                                                 ggggAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAAt                                                    <  1:894448/136‑1 (MQ=255)                                                                                                    gAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAACAg                                   >  1:449166/1‑150 (MQ=255)                                                                                                       cccGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCAcccgcgaagaggccggcacaggcaacggagatgttagactgtgcccacgtcacttcacgcgtacccccatggcctacaaaccct                                                      >  1:648940‑M2/1‑44 (MQ=255)                                                                                                       cccGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCAcccgcgaagaggccggcacaggcaacggagatgttagactgtgcccacgtcacttcacgcgtacccccatggcctacaaaccct                                                      <  2:648940‑M2/128‑85 (MQ=255)                                                                                                       cccGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTc                                                                                  >  1:1607777/1‑100 (MQ=255)                                                                                                       cccGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTc                                                                                  <  2:1607777/100‑1 (MQ=255)                                                                                                       cccGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAACAGGcc                                >  2:1183133/1‑150 (MQ=255)                                                                                                        ccGCTCCTGCCAGGGTTATTGGTATCTTGTAGGAGCGGGTTCAcccgcgaagaggccggcacaggcaacggagatgttagactgtgcccacgtcacttcacgcgtacccccatggcctacaaaccctcccccgcccagccaccttccgcc                               <  2:395636‑M2/150‑108 (MQ=255)                                                                                                        ccGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCCGTGAAAATGCCCCTATCTAAAACAGGccc                               >  2:113588/1‑150 (MQ=255)                                                                                                        ccGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTGGGCCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAACAGGccc                               >  1:1495218/1‑150 (MQ=255)                                                                                                         cGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCAcccgcgaagaggccggcacaggcaacggagatgttagactgtgcccacgtcacttcacgcgtaccccgagaggctacaaaccctcccccgcccagccaccttccgccc                              <  1:724648‑M2/150‑109 (MQ=255)                                                                                                              cTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGaa                                                                >  2:1921187/1‑111 (MQ=255)                                                                                                              cTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGaa                                                                <  1:1921187/111‑1 (MQ=255)                                                                                                                 ccAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCACTATCTAAAACAGGCCCCTGCCaaaa                      >  1:687661/1‑150 (MQ=255)                                                                                                                  cAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAACAGGCCCCTGCCAAAAc                     >  1:2256111/1‑150 (MQ=255)                                                                                                                  cAGGGTTATCGGGATCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAATACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAACAGGCCCCTGCCAAAAc                     <  1:958632/150‑1 (MQ=255)                                                                                                                    gggTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGc                                                                      >  1:2402003/1‑99 (MQ=255)                                                                                                                    gggTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGc                                                                      <  2:2402003/99‑1 (MQ=255)                                                                                                                      gTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAACACAGGCCCCTGCCAAAACGCTg                 <  2:2392932/150‑1 (MQ=255)                                                                                                                           cGGTATCTTGTAGGAGCGGGTTCACCAGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAACAGGCCCCTGCCAAAACGCTGTATCa            <  1:1183133/150‑1 (MQ=255)                                                                                                                                 cTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGCTCTCGATAGCTTTCATGTTGCCAAGCCTTGaa                                                                >  2:1910253/1‑92 (MQ=255)                                                                                                                                 cTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGCTCTCGATAGCTTTCATGTTGCCAAGCCTTGaa                                                                <  1:1910253/92‑1 (MQ=255)                                                                                                                                  ttGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGtt                                                                             <  1:995955/78‑1 (MQ=255)                                                                                                                                  ttGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGtt                                                                             >  2:995955/1‑78 (MQ=255)                                                                                                                                          gCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTaaaa                                      <  2:751058/109‑1 (MQ=255)                                                                                                                                          gCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTaaaa                                      >  1:751058/1‑109 (MQ=255)                                                                                                                                             ggTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGCCCTCAGTGAAAATGCCCCTATCTAAAACAGGCCCCTGCCAAAACGCTGTATCAGCATCGTGGa  >  1:1000899/1‑142 (MQ=255)                                                                                                                                             ggTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAACAGGCCCCTGCCAAAACGCTGTATCAGCATCGTGGa  <  2:1000899/142‑1 (MQ=255)                                                                                                                                              gTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATc                                           <  2:1217169/100‑1 (MQ=255)                                                                                                                                              gTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATc                                           >  1:1217169/1‑100 (MQ=255)                                                                                                                                                  |                                                                                                                                         TGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAACAGGCCCCTGCCAAAACGCTGTATCAGCATCGTGGA  >  NC_002947/1531714‑1531995

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.