New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3947984	13 (0.140)	4 (0.060)	4/194	NT	19.0%	coding (109/1797 nt)	PP_3483	type II secretion system protein
	?	NC_002947	= 3948013	24 (0.330)					coding (80/1797 nt)	PP_3483	type II secretion system protein

TCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCT  >  NC_002947/3947869‑3948162                                                                                                                                                 |                                                                                                                                                      ccagcctgcgacgcgcccctgagcggcgtcgaaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCtgt                                                                                                                                                  >  2:2016155‑M1/89‑150 (MQ=255)   agcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTgg                                                                                                                                                >  2:1478937‑M1/87‑150 (MQ=255)     ggCAGTCCAGCGGGCGCTCGTCAGTGGCTTGCAGACCGGCCTGGGCCAGGAGGTCGCGGGTGTAGGCGGAAATTTTTGCTGGGTTCTGCGCGGCCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGTCTGCATACATcctgtggga                                                                                                                                              >  1:320247‑M2/1‑141 (MQ=255)     cctgcgacgcgcccctgagcggagtcgtaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGa                                                                                                                                              >  2:1267944‑M1/85‑150 (MQ=255)        gcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCg                                                                                                                                           >  2:1779382‑M1/82‑150 (MQ=255)        aGTCGAGGAGGCGCTCGTCAGGGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgggagcg                                                                                                                                           >  2:1346185‑M2/1‑138 (MQ=255)         gTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATTTATcctgggggagcgg                                                                                                                                          >  2:2434320‑M2/1‑137 (MQ=255)         gTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgggagcgg                                                                                                                                          >  2:2383877‑M2/1‑137 (MQ=255)         gTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgggagcgg                                                                                                                                          <  1:2383877‑M2/150‑14 (MQ=255)           acgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGc                                                                                                                                        >  1:2399816‑M1/79‑150 (MQ=255)             aGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgggagcgggcat                                                                                                                                      >  1:1829589‑M2/1‑133 (MQ=255)                 ggCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgggagcgggcatgccc                                                                                                                                  >  1:2362905‑M2/1‑129 (MQ=255)                                 ttGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgggagcgggcatgcccgctcc                                                                                                                             <  2:2147273‑M2/139‑27 (MQ=255)                                 ttGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgggagcgggcatgcccgctcc                                                                                                                             >  1:2147273‑M2/1‑113 (MQ=255)                                       aCGGGCCTGGGCCAGGAGGTCGCTGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgggagcgggcatgcccgc                                                                                                                                <  2:345023‑M2/130‑24 (MQ=255)                                       aCGGGCCTGGGCCAGGAGGTCGCTGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgggagcgggcatgcccgc                                                                                                                                >  1:345023‑M2/1‑107 (MQ=255)                                           agaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTgg                                                                                                                                                >  2:1746445‑M1/47‑110 (MQ=255)                                           agaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTgg                                                                                                                                                <  1:1746445‑M1/64‑1 (MQ=255)                                                    aggaggTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGGATGCCCGCTCCCACAGGTACAGCACAGGTCTGTGGGCTGCATACATCCTGTGCGAGCGGGCATGCCCGCGAGGACGTCGTTGCAGGCTGTGCGGTGTCCggg                                                                                               >  2:1229074/1‑150 (MQ=38)                                                                                     gggTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgt                                                                                                                                                  <  2:1512650‑M2/66‑6 (MQ=255)                                                                                     gggTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgt                                                                                                                                                  >  1:1512650‑M2/1‑61 (MQ=255)                                                                                            gaGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAACGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTc                                                       <  2:1327122‑M1/148‑1 (MQ=255)                                                                                                GGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGAGCATACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAggg                                                   <  1:757565‑M1/150‑1 (MQ=255)                                                                                                    aTGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgggagcgggcatgcccgcgaagaacccagcaaaaatttccgcctacccccgcgacctcctggcccaggcccgtctgcaagccactgacgagcgcctgct                                               <  1:682022‑M2/150‑105 (MQ=255)                                                                                                    ATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGACTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGgcgc                                               <  2:1275468‑M1/150‑1 (MQ=255)                                                                                                       CCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGACATGGCCTGCGACTCCGCTCAGGGGCGCGTc                                            <  2:697272‑M1/150‑1 (MQ=255)                                                                                                        CCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCTAATGCTTCTGGCATGGCCTGCGACTCCGCTCaggggcgcccgc                                           <  2:2394354‑M1/150‑5 (MQ=255)                                                                                                         cGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgggagcgggcatgcccgcgaagaacccagcaaaaatttccgcctacccccgcgacctcctggcccaggcccgtctgcaagccactgacgagcgcctgctcgact                                          <  2:1803810‑M2/150‑110 (MQ=255)                                                                                                            tCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgcgggagcgggcatgcccgcgaagaacccagcaaaaatttccgcctacccccgcgccctcctggcccaggcccgtctgcaagcccctgacgagccccccctcgactgcc                                       <  2:208116‑M2/150‑113 (MQ=255)                                                                                                            TCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCcgc                                                                                                                                <  1:866168‑M1/61‑1 (MQ=255)                                                                                                            TCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCcgc                                                                                                                                >  2:866168‑M1/1‑61 (MQ=255)                                                                                                            TCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAgg                                       <  1:1805768‑M1/150‑1 (MQ=255)                                                                                                                ACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGTAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAggctgg                                   <  1:1099836‑M1/150‑1 (MQ=255)                                                                                                                ACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATACTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGcgtcgcacccctg                                   <  1:521850‑M1/150‑7 (MQ=255)                                                                                                                 caGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgggagcgggcatgcccgcgaagaacccagcaaaaatttccgcctacccccgcgacctcctggcccaggcccgtctgcaagccactgacgagcgcctgctcgactgcctggaa                                  >  2:682022‑M2/1‑33 (MQ=255)                                                                                                                 CAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAggctggc                                  >  1:1327122‑M1/1‑150 (MQ=255)                                                                                                                    GTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAAt                                                                                   <  2:1166504‑M1/98‑1 (MQ=255)                                                                                                                    GTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAAt                                                                                   >  1:1166504‑M1/1‑98 (MQ=255)                                                                                                                      aCATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCACGGc                             >  1:1554033/1‑150 (MQ=255)                                                                                                                        aTCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTcc                                                           <  1:407597/118‑1 (MQ=255)                                                                                                                        aTCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTcc                                                           >  2:407597/1‑118 (MQ=255)                                                                                                                         tCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAggg                                                   >  2:1477008/1‑125 (MQ=255)                                                                                                                         tCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAggg                                                   <  1:1477008/125‑1 (MQ=255)                                                                                                                         tCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAg                          <  1:697272/150‑1 (MQ=255)                                                                                                                         tCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAg                          >  2:849127/1‑150 (MQ=255)                                                                                                                         tCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCAATTCCTCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAg                          >  2:1145191/1‑150 (MQ=255)                                                                                                                             aGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGt                      >  2:288951/1‑150 (MQ=255)                                                                                                                                  tgtgGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCggg                 >  2:1589122/1‑150 (MQ=255)                                                                                                                                  tgtgGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCggg                 >  2:1587973/1‑150 (MQ=255)                                                                                                                                      ggCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGa                                                               >  2:1991781/1‑100 (MQ=255)                                                                                                                                      ggCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGa                                                               <  1:1991781/100‑1 (MQ=255)                                                                                                                                      ggCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGcgcc             >  2:1545296/1‑150 (MQ=255)                                                                                                                                       gCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTTCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAg                                                     >  2:1669422/1‑109 (MQ=255)                                                                                                                                       gCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTTCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAg                                                     <  1:1669422/109‑1 (MQ=255)                                                                                                                                        cTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGCGCGGGcgccgc           >  2:715300/1‑150 (MQ=255)                                                                                                                                         tGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCt          >  2:748752/1‑150 (MQ=255)                                                                                                                                          gCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTa         >  2:1217307/1‑150 (MQ=255)                                                                                                                                            aTACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTAtt       >  1:316589/1‑150 (MQ=255)                                                                                                                                            aTACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTAtt       >  1:602213/1‑150 (MQ=255)                                                                                                                                            aTACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTAtt       >  1:890960/1‑150 (MQ=255)                                                                                                                                            aTACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGAAGTTGCATCGTCCAGCTCTGGGATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTAtt       >  1:2123019/1‑150 (MQ=255)                                                                                                                                                 tCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGTTGCAGGCTTTGCAGATTCCGGGGTTGCATCGACTGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCt  <  1:1229074/150‑1 (MQ=255)                                                                                                                                                 tCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTTGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGCCTGTCTCGGCCAGGGGTGCTGGCGCCGCTATTCCCCt  <  1:1145191/150‑1 (MQ=255)                                                                                                                                                 tCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCt  <  1:288951/150‑1 (MQ=255)                                                                                                                                                 tCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCt  >  1:848898/1‑150 (MQ=255)                                                                                                                                                 |                                                                                                                                                      TCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCT  >  NC_002947/3947869‑3948162

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.