| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,385,130 | A→G | 5.2% | L110L (CTT→CTC) | PP_2986 ← | oxidoreductase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,385,130 | 0 | A | G | 5.2% | 291.1 / 3.4 | 96 | L110L (CTT→CTC) | PP_2986 | oxidoreductase |
| Reads supporting (aligned to +/- strand): ref base A (44/47); new base G (2/3); total (46/50) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.71e-01 | |||||||||||
AGCGAGGATCTTGCTGCGGTAGTAGTCATCGGCGTCGGCGTCGGCCCTCAGGCAGTTCTCCTCGATGGACGTGCCAGGTGCGCCGTTGAGCACAGCAATGGAAGACGTATGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGTGGCTGCCGCCCTTGTAGTTATCGCGAAAGAACGACGCTGTGTGAAACACCGTATCGCAACCTTGCAGCGATGCTGCGAATGCGTCGACCTCGGCCATGTC > NC_002947/3384983‑3385279 | aGCGAGGATCTTGCTGCGGTAGTAGTCATCGGCGTCGGCGTCGGCCCTCAGGCAGTTCTCCTCGATGGACGTGCCAGGTGCGCCGTTGAGCACAGCAATGGAAGACGTATGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAg > 1:1906307/1‑150 (MQ=255) cGAGGATCTTGCTGCGGTAGTAGTCATCGGCGTCGGCGTCGGCCCTCAGGCAGTTCTCCTCGATGGACGTGCCAGGTGCGCCGTTGAGCACAGCAATGGAAGACTTATGGATGAACCGTCGTATGTCGGCCCCGTAGGCCTGCTCAAGCa < 1:295406/150‑1 (MQ=255) cGAGGATCTTGCTGCGGTAGTAGTCATCGGCGTCGGCGTCGGCCCTCAGGCAGTTCTCCTCGATGGACGTGCCAGGTGCGCCGTTGAGCACAGCAATGGAAGACGTATGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCa < 1:31892/150‑1 (MQ=255) cGAGGATCTTGCTGCGGTAGTAGTCATCGGCGTCGGCGTCGGCCCTCAGGCAGTTCTCCTCGATGGACGTGCCAGGCGCGCCGTTGAGCACAGCAATGGAAGACGTATGGATGAACACTCGCCGTCGTGCCCCGTAGGCCTGCTCAAGCa < 1:1881095/150‑1 (MQ=255) ggATCTTGCTGCGGTAGTAGTCATCGGCGTCGGCGTCGGCCCTCAGGCAGTTCTCCTCGATGGACGTGCCAGGTGCGCCGTTGAGCACAGCAATGGAAGACGTATGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTTGAGCAGgc < 1:2402384/150‑1 (MQ=255) aTCTTGCTGCGGTAGTAGTCATCGGCGTCGGCGTCGGCCCTCAGGCAGTTCTCCTCGATGGACGTGCCAGGTGCGCCGTTGAGCACAGCAATGGAAGACGTATGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGgcgc > 2:417028/1‑150 (MQ=255) tCTTGCTGCGGTAGTAGTCATCGGCGTCGGCGTCGGCCCTCAGGCAGTTCTCCTCGATGGACGTGCCAGGTGCGCCGTTGAGCACAGCAATGGAAGACGTATGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGcgcc > 1:951396/1‑150 (MQ=255) ttGCTGCGGTAGTAGTCATCGGCGTCGGCGTCGGCCCTCAGGCAGTTCTCCTCGATGGACGTGCCAGGTGCGCCGTTGAGCACAGCAATGGAAGACGTATGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGcgccgc > 2:758067/1‑150 (MQ=255) ttGCTGCGGTAGTAGTCATCGGCGTCGGCGTCGGCCCTCAGGCAGTTCTCCTCGATGGACGTGCCAGGTGCGCCGTTGAGCACAGCAATGGAAGACGTATGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGcgccgc < 1:1989665/150‑1 (MQ=255) tgcGGTAGTAGTCATCGGCGTCGGCGTCGGCCCTCAGGCAGTTCTCCTCGATGGACGTGCCAGGTGCGCCGTTGAGCACAGCAATGGAAGACGTATGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTAc > 2:1741429/1‑150 (MQ=255) tgcGGTAGTAGTCATCGGCGTCGGCGTCGGCCCTCAGGCAGTTCTCCTCGATGGACGTGCCAGGTGCGCCGTTGAGCACAGCAATGGAAGACGTATGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTAc > 1:695200/1‑150 (MQ=255) gcGGTAGTAGTCATCGGCGTCGGCGTCGGCCCTCAGGCAGTTCTCCTCGATGGACGTGCCAGGTGCGCCGTCGCGCACAGCAATGGAAGGCGTATGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTAcc < 2:791557/150‑1 (MQ=255) gcgtcggcgtcgGCCCTCAGGCAGTTCTCCTCGATGGACGTGCCAGGTGCGCCGTTGAGCACAGCAATGGAAGACGTATGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑t < 1:2216828/150‑1 (MQ=255) gtcggcgtcggcCCTCAGGCAGTTCTCCTCGATGGATGTGCCAGGTGCGCCGTTGAGCACAGCAATGGAAGACGTATGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTc > 1:788468/1‑150 (MQ=255) cggcgtcggcCCTCAGGCAGTTCTCCTCGATGGACGTGCCAGGTGCGCCGTTGAGCACAGCAATGGAAGACGTATGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑a < 2:525027/150‑1 (MQ=255) cggcgtcggcCCTCAGGCAGTTCTCCTCGATGGACGTGCCAGGTGCGCCGTTGAGCACAGCAATGGAAGACGTATGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑a < 2:695200/150‑1 (MQ=255) cggcgtcggcCCTCAGGCAGTTCTCCTCGATGGACGTGCCAGGTGCGCCGTTGAGCACAGCAATGGAAGACGTATGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑a < 2:951396/150‑1 (MQ=255) ggcgtcggcCCTCAGGCAGTTCTCCTCGATGGACGTGCCAGGTGCGCCGTTGAGCACAGCAATGGAAGACGTATGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGacac < 1:419732/135‑1 (MQ=255) ggcgtcggcCCTCAGGCAGTTCTCCTCGATGGACGTGCCAGGTGCGCCGTTGAGCACAGCAATGGAAGACGTATGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGacac > 2:419732/1‑135 (MQ=255) gcgtcggcCCTCAGGCAGTTCTCCTCGATGGACGTGCCAGGTGCGCCGTTGAGCACAGCAATGGAAGACGTATGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGt < 2:1756899/150‑1 (MQ=255) cggcCCTCAGGCAGTTCTCCTCGATGGACGTGCCAGGTGCGCCGTTGAGCACAGCAATGGAAGACGTATGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCCTACCCGACACGTTTATCTG‑TTCG‑AGTTCtt < 2:1411273/150‑1 (MQ=255) gcCCTCAGGCAGTTCTCCTCGATGGACGTGCCAGGTGCGCCGTTGAGCACAGCAATGGAAGACGTATGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAg > 2:2407959/1‑107 (MQ=255) gcCCTCAGGCAGTTCTCCTCGATGGACGTGCCAGGTGCGCCGTTGAGCACAGCAATGGAAGACGTATGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAg < 1:2407959/107‑1 (MQ=255) gcCCTCAGGCAGTTCTCCTCGATGGACGTGCCAGGTGCGCCGTTGAGCACAGCAATGGAAGACGTATGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTc < 1:702439/150‑1 (MQ=255) gcCCTCAGGCAGTTCTCCTCGATGGACGTGCCAGGTGCGCCGTTGAGCACAGCAATGGAAGACGTATGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTc > 1:609064/1‑150 (MQ=255) gcCCTCAGGCAGTTCTCCTCGATGGACGTGCCAGGTGCGCCGTTGAGCACAGCAATGGAAGACGTATGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTc < 1:297051/150‑1 (MQ=255) gcCCTCAGGCAGTTCTCCTCGATGGACGTGCCAGGTGCGCCGTTGAGCACAGCAATGGAAGACGTATGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTc < 1:2134538/150‑1 (MQ=255) ccTCAGGCAGTTCTCCTCGATGGACGTGCCAGGTGCGCCGTTGAGCACAGCAATGGAAGACGTATGGATTAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCT‑AGGTCTTTCCa > 1:1218152/1‑150 (MQ=255) ccTCAGGCAGTTCTCCTCGATGGACGTGCCAGGTGCGCCGTTGAGCACAGCAATGGAAGACGTATGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCa > 2:26222/1‑150 (MQ=255) tCAGGCAGTTCTCCTCGATGGACGTGCCAGGTGCGCCGTTGAGCACAGCAATGGAAGACGTATGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCGGAAGCATGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGt < 1:1022985/150‑1 (MQ=255) ttCTCCTCGATGGACGTGCCAGGTGCGCCGTTGAGCACAGCAATGGAAGACGTATGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGTGGCTgccg < 2:609064/150‑1 (MQ=255) tcctcGATGGACGTGCCAGGTGCGCCGTTGAGCACAGCAATGGAAGACGTATGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCTCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGTGGCTGCCGccc > 2:1233122/1‑150 (MQ=255) cctcGATGGACGTGCCAGGTGCGCCGTTGAGCACAGCAATGGAAGACGTATGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑a > 1:627629/1‑126 (MQ=255) cctcGATGGACGTGCCAGGTGCGCCGTTGAGCACAGCAATGGAAGACGTATGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑a < 2:627629/126‑1 (MQ=255) ctcGATGGACGTGCCAGGTGCGCCGTTGAGCACAGCAATGGAAGACGTATGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑t > 2:1238033/1‑121 (MQ=255) ctcGATGGACGTGCCAGGTGCGCCGTTGAGCACAGCAATGGAAGACGTATGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑t < 1:1238033/121‑1 (MQ=255) ctcGATGGACGTGCCAGGTGCGCCGTTGAGCACAGCAATGGAAGACGTATGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCttt < 1:386365/132‑1 (MQ=255) ctcGATGGACGTGCCAGGTGCGCCGTTGAGCACAGCAATGGAAGACGTATGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCttt > 2:386365/1‑132 (MQ=255) ctcGATGGACGTGCCAGGTGCGCCGTTGAGCACAGCAATGGAAGACGTATGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGTGGCTGCCGCCCtt > 1:657414/1‑150 (MQ=255) ctcGATGGACGTGCCAGGTGCGCCGTTGAGCACAGCAATGGAAGACGTATGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTGTATCTG‑TTCC‑AGTTCTTTACCGTGGCTGCCGCCCtc > 2:806929/1‑149 (MQ=255) tcGATGGACGTGCCAGGTGCGCCGTTGAGCACAGCAATGGAAGACGTATGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCttt < 2:1482334/131‑1 (MQ=255) tcGATGGACGTGCCAGGTGCGCCGTTGAGCACAGCAATGGAAGACGTATGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCttt > 1:1482334/1‑131 (MQ=255) tcGATGGACGTGCCAGGCGCGCCGTTGAGCACAGCAATGGAAGACGTATGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGTGGCTGCCGCCCTTg > 1:2022990/1‑150 (MQ=255) aTGGACGTGCCAGGTGCGCCGTTGAGCACAGCAATGGAAGACGTATGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGTGGCTGCCGCCCTTGTAg > 2:579310/1‑150 (MQ=255) tGCCAGGTGCGCCGTTGAGCACAGCAATGGAAGACGTATGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGTGGCTGCCGCCCTTGTAGTTATcgc < 2:2005919/150‑1 (MQ=255) cGTTGAGCACAGCAATGGAAGACGTATGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGTGGCTGCCGCCCTTGTAGTTATCGCGaa > 2:1642147/1‑141 (MQ=255) cGTTGAGCACAGCAATGGAAGACGTATGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGTGGCTGCCGCCCTTGTAGTTATCGCGaa < 1:1642147/141‑1 (MQ=255) cGTTGAGCACAGCAATGGAAGACGTATGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGTGGCTGCCGCCCTTGTAGTTATCGCGAAAGAacgacg < 1:1716893/150‑1 (MQ=255) gAGCACAGCAATGGAAGACGTATGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGTGGCTGCCGCCCTTGTAGTTATCGCGAAAGAACGACGCtgt > 1:1072927/1‑150 (MQ=255) gAGCACAGCAATGGAAGACGTATGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGGTGCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGTGGCTGCCGCCCTTGTAGTTATCGCGAAAGAACGACGCtgt < 1:758067/150‑1 (MQ=255) gCACAGCAATGGAAGACGTATGGATGAACCGTCGTATGCCTGCCCCGTAGGCCTGCTCAAGCACGTTCAGATAACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGTGGCTGCCGCCCTTGTAGTTATCGCGAAAGAACGACGCtgtgt < 1:2253375/150‑1 (MQ=255) acaGCAATGGAAGACGTATGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGTGGCTGCCGCCCTTGTAGTTATCGCGAAAGAACGACGCTGTGTGa < 1:1555238/150‑1 (MQ=255) caGCAATGGAAGACGTATGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGacac < 2:2140036/79‑1 (MQ=255) caGCAATGGAAGACGTATGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGacac > 1:2140036/1‑79 (MQ=255) tATGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGTGGCTGCCGCCCTTGTa > 2:2049995/1‑106 (MQ=255) tATGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGTGGCTGCCGCCCTTGTa < 1:2049995/106‑1 (MQ=255) aTGGGTGAACCGTCGTATGCCGGCCCCGTAGGCTTGCTCAAGCAGGCGCCGCGTCTCGGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGTGGCTGCCGCCCTTGTAGTTATCGCGAAAGAACGACGCTGTGTGAAACACCGTATCGCAAcc > 2:1527595/1‑150 (MQ=255) aTGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGTGGCTGCCGCCCTTGTAGTTATCGCGAAAGAACGACGCTGTGTGAAACACCGTATCGCAAcc > 2:2123573/1‑150 (MQ=255) ggATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGTGGCTGCCGCCCTTGTAGTTATCGCGAAAGAACGACGCTGTGTGAAACACCGTATCGCAACCtt < 1:2161347/150‑1 (MQ=255) gacgAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGTGGCTGCCGCCCTTGTAGTTATCGCGAAAGAACGACGCtgtgt < 2:692101/125‑1 (MQ=255) gacgAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGTGGCTGCCGCCCTTGTAGTTATCGCGAAAGAACGACGCtgtgt > 1:692101/4‑128 (MQ=255) gATGAACCGTCGTATGCCGGCCGCGTAGGACTGCACAATCAGGCGCAGCATACTGGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGTGGCTGCCGCCCTTGTAGTTATCGCGAAAGAACGACGCTGTGTGAAACACCGTATCGCAACCTTg > 1:300025/1‑150 (MQ=255) gATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCACGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGTGGCTGCCGCCCTTGCAGTTATCGCGAAAGAACGACGCTGTGTGAAACACCGTATCGCAACCTTg > 2:1230357/1‑150 (MQ=255) aTGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCttt < 1:1058725/80‑1 (MQ=255) aTGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCttt > 2:1058725/1‑80 (MQ=255) aTGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGTGGCTGCCGCCCTTGTAGTTATc > 2:1456365/1‑107 (MQ=255) aTGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGTGGCTGCCGCCCTTGTAGTTATc < 1:1456365/107‑1 (MQ=255) aCCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGTGGCTGCCGCCCTTGTAGTTATCGCGAAAGAACGACGCTGTGTGAAACACCGTATCGCAACCTTGCAGCg > 2:1741256/1‑150 (MQ=255) cgtcgtATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGTGGCTGCCGCCCTTGTAGTTATCGCGAAAGAACGACGCTGTGTGAAACACCGTATCGCAACCTTGCAGCGAt > 1:1442219/1‑150 (MQ=255) tcgtATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGTGGCTGCCGCCCTTGTAGTTATCGCGAAAGAACGACGCTGTGTGAAACACCGTATCGCAACCTTGCAGCGAtgc > 1:1845272/1‑150 (MQ=255) tATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGTGGCTGCCGCCCTTGTAGTTATCGCGAAAGAACGACGCTGTGTGAAACACCGTATCGCAACCTTGCAGCGAtgctgc > 2:2107908/1‑150 (MQ=255) cGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCa > 1:426145/1‑67 (MQ=255) cGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCa < 2:426145/67‑1 (MQ=255) ggCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGTGGCTGCCGCCCTTGTa < 2:874818/84‑1 (MQ=255) ggCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGTGGCTGCCGCCCTTGTa > 1:874818/1‑84 (MQ=255) ggCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGTGGCTGCCGCCCTTGTAGTTATCGCGAAAGAACGACGCTGTGTGAAACACCGTATCGCAACCTTGCAGCGATGCTGCGAATGc < 1:2083695/150‑1 (MQ=255) ccccGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGTGGCTGCCGCCCTTGTAGTTATCGCGAAAGAACGACGCTGTGTGAAACACCGTATCGCAACCTTGCAGCGATGCTGCGAATGCGt < 1:1212994/150‑1 (MQ=255) ccccGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGTGGCTGCCGCCCTTGTAGTTATCGCGAAAGAACGACGCTGTGTGAAACACCGTATCGCAACCTTGCAGCGATGCTGCGAATGCGt > 1:606379/1‑150 (MQ=255) cccGTAGGCCTGCTCGAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGTGGCTgccgc < 2:1561457/74‑1 (MQ=255) cccGTAGGCCTGCTCGAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGTGGCTgccgc > 1:1561457/1‑74 (MQ=255) gcggcgCCTGCTTGAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGTGGCTGCCTCCCTTGTAGTTATCGCGAAAGAACGACGCTGTGTGAAACACCGTATCGCAACCTTGCAg > 1:766552/6‑130 (MQ=255) gcggcgCCTGCTTGAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGTGGCTGCCGCCCTTGTAGTTATCGCGAAAGAACGACGCTGTGTGAAACACCGTATCGCAACCTTGCAg < 2:766552/125‑1 (MQ=255) cGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGTGGCTGCCGCCCTTGTAGTTATCGCGAAAGAACGACGCTGTGTGAAACACCGTATCGCAACCTTGCAGCGATGCTGCGAATGCGTCGa < 1:541090/150‑1 (MQ=255) cGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGTGGCTGCCGCCCTTGTAGTTATCGCGAAAGAACGACGCTGTGTGAAACACCGTATCGCAACCTTGCAGCGATGCTGCGAATGCGTCGa > 2:799116/1‑150 (MQ=255) ggCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGTGGCTGCCGCCCTTGTAGTTATCGCGAAAGAACGACGCTGTGTGAAACACCGTATCGCAACCTTGCAGCGATGCTGCGAATGCGTCGACCTc < 1:1821876/150‑1 (MQ=255) gCCTGCTCAAGCAGGCTCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGTGGCTGCCGCCCTTGTAGTTATCGCGAAAGAACGACGCTGTGTGAAACACCGTATCGCAACCTTGCAGCGATGCTGCGAATGCGTCGACCTCg < 2:1218152/150‑1 (MQ=255) gCCTGCTCAAGCAGGCGCCGCGTACCCGACCCGTTAGTATGCTTTGTCGCGCATT‑‑AGTTGCTGCCGCCCTTGTAGTTATCGCGAAAGAACGACGCTGTGTGAAACACCGTATCGCAACCTTGCAGCGATGCTGCGAATGCGTCGACCTCg < 1:1741429/150‑1 (MQ=255) gCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGTGGCTGCCGCCCTTGTAGTTATCGCGAAAGAacga < 1:797461/92‑1 (MQ=255) gCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGTGGCTGCCGCCCTTGTAGTTATCGCGAAAGAacga > 2:797461/1‑92 (MQ=255) gCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGTGGCTGCCGCCCTTGTAGTTATCGCGAAAGAACGACGCTGTGTGAAACACCGTATCGCAACCTTGCAGCGATGCTGCGAATGCGTc < 2:650859/143‑1 (MQ=255) gCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGTGGCTGCCGCCCTTGTAGTTATCGCGAAAGAACGACGCTGTGTGAAACACCGTATCGCAACCTTGCAGCGATGCTGCGAATGCGTc > 1:650859/1‑143 (MQ=255) gCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGTGGCTGCCGCCCTTGTAGTTATCGCGAAAGAACGACGCTGTGTGAAACACCGTATCGCAACCTTGCAGCGATGCTGCGAATGCGTCGACCTCg < 1:452775/150‑1 (MQ=255) ccTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGTGGCTGCCGCCCTTGTAGTTATCGCGAAAGAACGACGCTGTGTGAAACACCGTATCGCAACCTTGCAGCGATGCTGCGAATGCGTCGACCTCgg > 1:2040354/1‑150 (MQ=255) cTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGTGGCTGCCGCCCTTGTAGTTATCGCGAAAGAACGACGCTGTGTGAAACACCGTATCGCAACCTTGCAGCGATGCTGCGAATGCGTCGACCTCGGc < 2:1442219/150‑1 (MQ=255) cTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGTGGCTGCCGCCCTTGTAGTTATCGCGAAAGAACGACGCtgtg < 1:1999815/94‑1 (MQ=255) cTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGTGGCTGCCGCCCTTGTAGTTATCGCGAAAGAACGACGCtgtg > 2:1999815/1‑94 (MQ=255) aaGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGTGGCTGCCGCCCTTGTAGTTATCGCGAAAGAACGACGCTGTGTGAAACACCGTATCGCAACCTTGCAGCGATGCTGCGAATGCGTCGACCTCGGCCATGTc > 1:235253/1‑150 (MQ=255) aaGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGTGGCTGCCGCCCTTGTAGTTATCGCGAAAGAACGACGCTGTGTGAAACACCGTATCGCAACCTTGCAGCGATGCTGCGAATGCGTCGACCTCGGCCATGTc < 1:2339740/150‑1 (MQ=255) | AGCGAGGATCTTGCTGCGGTAGTAGTCATCGGCGTCGGCGTCGGCCCTCAGGCAGTTCTCCTCGATGGACGTGCCAGGTGCGCCGTTGAGCACAGCAATGGAAGACGTATGGATGAACCGTCGTATGCCGGCCCCGTAGGCCTGCTCAAGCAGGCGCCGCGTACCCGACACGTTTATCTG‑TTCG‑AGTTCTTTCCAGTGGCTGCCGCCCTTGTAGTTATCGCGAAAGAACGACGCTGTGTGAAACACCGTATCGCAACCTTGCAGCGATGCTGCGAATGCGTCGACCTCGGCCATGTC > NC_002947/3384983‑3385279 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |