Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 3,491,284 G→T 6.5% H50Q (CAC→CAA)  clpV ← protein ClpV1

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029473,491,2840GT 6.5% 291.7 / 5.6 92H50Q (CAC→CAA) clpVprotein ClpV1
Reads supporting (aligned to +/- strand):  ref base G (43/43);  new base T (2/4);  total (45/47)
Fisher's exact test for biased strand distribution p-value = 6.77e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.28e-01

GCGACAGCGCCGGGGTGCGGGTATTACCTTTCTTGAAGGTGCCCAGGGCGGTGACCAGCTGCGCTTGCAGGCGTTCGGCGACGACCTGGTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGGCCGCCGCGCTTTCGGTGGCCGTGCGGCTGGTTTCGTTGAGCTTGGCGAACAGAGACTTCAGGTTCACAAGGCGACCCCATCGTAAGGAATGTGGAAGA  >  NC_002947/3491136‑3491425
                                                                                                                                                    |                                                                                                                                             
gcgACAGCGCCGGGGTGCGGGTATTACCTTTCTTGAAGGTGCCCAGGGCGGTGACCAGCTGCGCTTGCAGGCGTTCGGCGACGACCTGGTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGt                                                                                                                                              >  2:1475224/1‑150 (MQ=255)
 cgACAGCGCCGGGGTGCGGGTATTACCTTTCTTGCCGGTGGCCAGGGCGGTGACCAGCTGCGCTTGCAGGCGTTCGGCGACGACCTGGTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTg                                                                                                                                             <  2:1774350/150‑1 (MQ=255)
  gACAGCGCCGGGGTGCGGGTATTACCTTTCTTGAAGGTGCCCAGGGCGGTGACCAGCTGCGCTTGCAGGCGTTCGGCGACGACCTGGTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCACCTGCTGCTGCAGTTGc                                                                                                                                            >  2:907784/1‑150 (MQ=255)
   aCAGCGCCGGGGTGCGGGTATTACCTTTCTTGAAGGTGCCCAGGGCGGTGACCAGCTGCGCTTGCAGGCGTTCGGCGACGACCTGGTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCACCTGCTGCTGCAGTTGCt                                                                                                                                           <  1:910465/150‑1 (MQ=255)
    cAGCGCCGGGGTGCGGGTATTACCTTTCTTGAAGGTGCCCAGGGCGGTGACCAGCTGCGCTTGCAGGCGTTCGGCGACGACCTGGTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCACCTGCTGCTGCAGTTGCTc                                                                                                                                          <  1:907784/150‑1 (MQ=255)
       cgcCGGGGTGCGGGTATTACCTTTCTTGAAGGTGCCCAGGGCGGTGACCAGCTGCGCTTGCAGGCGTTCGGCGACGACCTGGTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCAc                                                                                                                                       >  2:889740/1‑150 (MQ=255)
             ggTGCGGGTATTACCTTTCTTGAAGGTGCCCAGGGCGGTGACCAGCTGCGCTTGCAGGCGTTCGGCGACGACCTGGTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCAc                                                                                                                                 <  1:729544/150‑1 (MQ=255)
              gTGCGGGTATTACCTTTCTTGAAGGTGCCCAGGGCGGTGACCAGCTGCGCTTGCAGGCGTTCGGCGCCGACCTGGTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCAcc                                                                                                                                <  1:1335203/150‑1 (MQ=255)
                 cGGGTATTACCTTTCTTGAAGGTGCCCAGGGCGGTGACCAGCTGCGCTTGCAGGCGTTCGGCGACGACCTGGTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCg                                                                                                                             <  1:1316993/150‑1 (MQ=255)
                       ttACCTTTCTTGAAGGTGCCCAGGGCGGTGACCAGCTGCGCTTGCAGGCGTTCGGCGACGACCTGGTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATgg                                                                                                                       >  2:2001986/1‑150 (MQ=255)
                           cTTTCTTGAAGGTGCCCAGGGCGGTGACCAGCTGCGCTTGCAGGCGTTCGGCGACGACCTGGTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCt                                                                                                                   >  2:1168373/1‑150 (MQ=255)
                            tttCTTGAAGGTGCCCAGGGCGGTGACCAGCTGCGCTTGCAGGCGTTCGGCGACGACCTGGTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTcc                                                                                                                                         <  2:2175485/127‑1 (MQ=255)
                            tttCTTGAAGGTGCCCAGGGCGGTGACCAGCTGCGCTTGCAGGCGTTCGGCGACGACCTGGTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTcc                                                                                                                                         >  1:2175485/1‑127 (MQ=255)
                                ttGAAGGTGCCCAGGGCGGTGACCAGCTGCGCTTGCAGGCGTTCGGCGACGACCTGGTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTc                                                                                                                                          <  1:1260447/122‑1 (MQ=255)
                                ttGAAGGTGCCCAGGGCGGTGACCAGCTGCGCTTGCAGGCGTTCGGCGACGACCTGGTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTc                                                                                                                                          >  2:1260447/1‑122 (MQ=255)
                                  gAAGGTGCCCAGGGCGGTGACCAGCTGCGCTTGCAGGCGTTCGGCGACGACCTGGTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAg                                                                                                            <  2:53288/150‑1 (MQ=255)
                                    aGGTGCCCAGGGCGGTGACCAGCTGCGCTTGCAGGCGTTCGGCGACGACCTGGTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGc                                                                                                          <  1:1168373/150‑1 (MQ=255)
                                       tGCCCAGGGCGGTGACCAGCTGCGCTTGCAGGCGTTCGGCGACGACCTGGTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGcaca                                                                                                       <  1:2145433/150‑1 (MQ=255)
                                        gCCCAGGGCGGTGACCAGCTGCGCTTGCAGGCGTTCGGCGACGACCTGGTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAg                                                                                                      >  1:1417000/1‑150 (MQ=255)
                                          ccAGGGCGGTGACCAGCTGCGCTTGCAGGCGTTCGGCGACGACCTGGTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATg                                                                                                                        <  2:1076450/130‑1 (MQ=255)
                                          ccAGGGCGGTGACCAGCTGCGCTTGCAGGCGTTCGGCGACGACCTGGTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATg                                                                                                                        >  1:1076450/1‑130 (MQ=255)
                                          ccAGGGCGGTGACCAGCTGCGCTTGCAGGCGTTCGGCGACGACCTGGTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAggg                                                                                                    >  1:1695289/1‑150 (MQ=255)
                                           cAGGGCGGTGACCAGCTGCGCTTGCAGGCGTTCGGCGACGACCTGGTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGgc                                                                                                   >  2:1295334/1‑150 (MQ=255)
                                            aGGGCGGTGACCAGCTGCGCTTGCAGGCGTTCGGCGACGACCTGGTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTc                                                                                                                                    >  2:790672/1‑116 (MQ=255)
                                            aGGGCGGTGACCAGCTGCGCTTGCAGGCGTTCGGCGACGACCTGGTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTc                                                                                                                                    <  1:790672/116‑1 (MQ=255)
                                              ggCGGTGACCAGCTGCGCTTGCAGGCGTTCGGCGACGACCTGGTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGgccgc                                                                                                <  2:1652845/150‑1 (MQ=255)
                                                 ggTGACCAGCTGCGCTTGCAGGCGTTCGGCGACGACCTGGTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGca                                                                                                         <  2:447246/138‑1 (MQ=255)
                                                 ggTGACCAGCTGCGCTTGCAGGCGTTCGGCGACGACCTGGTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGca                                                                                                         >  1:447246/1‑138 (MQ=255)
                                                   tGACCAGCTGCGCTTGCAGGCGTTCGGCGACGACCTGGTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGGCCGCCgcgc                                                                                           >  2:955827/1‑150 (MQ=255)
                                                      ccAGCTGCGCTTGCAGGCGTTCGGCGACGACCTGGTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGGCCGCCGCGCttt                                                                                        <  1:2002100/150‑1 (MQ=255)
                                                      ccAGCTGCGCTTGCAGGCGTTCGGCGACGACCTGGTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGGCCGCCGCGCttt                                                                                        >  2:1936456/1‑150 (MQ=255)
                                                       cAGCTGCGCTTGCAGGCGTTCGGCGACGACCTGGTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGGCCGCCGCGCTTTc                                                                                       >  2:1606204/1‑150 (MQ=255)
                                                        aGCTGCGCTTGCAGGCGTTCGGCGACGACCTGGTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGGCCGCCGCGCTTTCg                                                                                      <  1:838836/150‑1 (MQ=255)
                                                         gCTGCGCTTGCAGGCGTTCGGCGACGACCTGGTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTaa                                                                                                                          >  1:305899/1‑113 (MQ=255)
                                                         gCTGCGCTTGCAGGCGTTCGGCGACGACCTGGTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTaa                                                                                                                          <  2:305899/113‑1 (MQ=255)
                                                         gCTGCGCTTGCAGGCGTTCGGCGACGACCTGGTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGGCCGCCGCGCTTTCgg                                                                                     >  2:310733/1‑150 (MQ=255)
                                                           tGCGCTTGCAGGCGTTCGGCGACGACCTGGTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGGCCGCCGCGCTTTCGGTg                                                                                   <  1:642479/150‑1 (MQ=255)
                                                             cgcTTGCAGGCGTTCGGCGACGACCTGGTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGGCCGCCGCGCTTTCGGTGGc                                                                                 <  2:1295251/150‑1 (MQ=255)
                                                              gcTTGCAGGCGTTCGGCGACGACCTGGTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGGCCGCCGCGCTTTCGGTGGcc                                                                                >  1:1529510/1‑150 (MQ=255)
                                                                ttGCAGGCGTTCGGCGACGACCTGGTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGGCCGCCGCGCTTTCGGTGGCCGt                                                                              >  2:150568/1‑150 (MQ=255)
                                                                    aGGCGTTCGGCGACGACCTGGTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGgccgcc                                                                                               <  2:988852/129‑1 (MQ=255)
                                                                    aGGCGTTCGGCGACGACCTGGTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGgccgcc                                                                                               >  1:988852/1‑129 (MQ=255)
                                                                    aGGCGTTCGGCGACGACCTGGTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGGCCGCCGCGCTTTCGGTGGCCGTGCgg                                                                          >  2:709202/1‑150 (MQ=255)
                                                                     ggCGTTCGGCGACGACCTGGTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGGCCGCCGCGCTTTCGGTGGCCGTGCGGc                                                                         >  1:1315222/1‑150 (MQ=255)
                                                                        gTTCGACGACGACCTGGTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGGCCGCCGCGCTTTCGGTGGCCGTGCGGCTgg                                                                      >  1:1118145/1‑150 (MQ=255)
                                                                          tCGGCGACGACCTGGTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCCCAGCTTCCACCTCGTATTTGTCTGCCTGGAGGCACAGGGCCGGCGCGCTTTCGGTGGCCGTGCGGCTGGtt                                                                    <  1:2255752/150‑1 (MQ=255)
                                                                              cgacgaCCTGGTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGGCCGCCGCGCTTTCGGTGGCCGTGCGGCTGGTTTCGt                                                                <  1:1936456/150‑1 (MQ=255)
                                                                               gacgacCTGGTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGGCCGCCGCGCTTTCGGTGGCCGTGCGGCTGGTTTCGtt                                                               <  1:310733/150‑1 (MQ=255)
                                                                                  gacCTGGTAGTGGCGCAGGAACGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGGCCGCCGCGCTTTCGGTGGCCGTGCGGCTGGTTTCGTTGAg                                                            >  2:217199/1‑150 (MQ=255)
                                                                                     cTGGTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGGCCGCCGCGCTTTCGGTGGCCGTGCGGCTGGTTTCGtt                                                               <  1:1886011/144‑1 (MQ=255)
                                                                                     cTGGTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGGCCGCCGCGCTTTCGGTGGCCGTGCGGCTGGTTTCGtt                                                               >  2:1886011/1‑144 (MQ=255)
                                                                                     cTGGTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGGCCGCCGCGCTTTCGGTGGCCGTGCGGCTGGTTTCGTTGAGCtt                                                         >  1:802935/1‑150 (MQ=255)
                                                                                      tGGTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGGCCGCCGCGCTTTCGGTGGCCATGCGGCTGGTTTCGTTGAGCTTg                                                        >  2:2338172/1‑150 (MQ=255)
                                                                                        gTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGGCCGCCGCGCTTTCGGTGGCCGTGCGGCTGGTTTCGTTGAGCTTGGc                                                      <  2:1315222/150‑1 (MQ=255)
                                                                                        gTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGGCCGCCGCGCTTTCGGTGGCCGTGCGGCTGGTTTCGTTGAGCTTGGc                                                      >  2:1346839/1‑150 (MQ=255)
                                                                                              gcgcAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGGCCGCCGCGCTTTCGGTGGCCGTGCGGCTGGTTTCGTTGAGCTTGGCGAACag                                                >  2:1113020/1‑150 (MQ=255)
                                                                                              gcgcAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGGCCGCCGCGCTTTCGGTGGCCGTGCGGCTGGTTTCGTTGAGCTTGGCGAACag                                                <  1:955827/150‑1 (MQ=255)
                                                                                               cgcAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGGCCGCCGCGCTTTCGGTGGCCGTGCGGCTGGTTTCGTTGAGCTTGGCGAACaga                                               <  1:255000/150‑1 (MQ=255)
                                                                                                gcAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGc                                                                                                                    >  2:1876828/1‑80 (MQ=255)
                                                                                                gcAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGc                                                                                                                    <  1:1876828/80‑1 (MQ=255)
                                                                                                gcAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGGCCGCCGCGCTTTCGGTGGCCGTGCGGCTGGTTTCGTTGAGCTTGGCCAACagag                                              >  1:109568/1‑150 (MQ=255)
                                                                                                 cAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGGCCGCCGCGCTTTCGGTGGCCGTGCGGCTGGTTTCGTTGAGCTTGGCGAACAgaga                                             <  2:1428602/150‑1 (MQ=255)
                                                                                                       cGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGGCCGCCGCGCTTTCGGTGGCCGTGCGGCTGGTTTCGTTGAGCTTGGCGAACAGAGACTTCAg                                       <  1:1272497/150‑1 (MQ=255)
                                                                                                            ccAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGGCCGCCGCGCTTTCGGTGGCCGTGCGGCTGGTTTCGTTGAGCTTGGCGAACAGAGACTTCAGGTTca                                  <  1:1346839/150‑1 (MQ=255)
                                                                                                            ccAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGGCCGCCGCGCTTTCGGTGGCCGTGCGGCTGGTTTCGTTGAGCTTGGCGAACAGAGACTTCAGGTTca                                  <  1:889740/150‑1 (MQ=255)
                                                                                                                gTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGcaca                                                                                                       <  1:2115736/77‑1 (MQ=255)
                                                                                                                gTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGcaca                                                                                                       >  2:2115736/1‑77 (MQ=255)
                                                                                                                 tCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGGCCGCCGCGCTTTCGGTGGCCGTGCGGCTGGTTTCGTTGAGCTTGGCGAACAGAGACTTCAGGTTCACAAgg                             >  2:2146427/1‑150 (MQ=255)
                                                                                                                    cTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGGCCGCCGCGCTTTCGGTGGCCGTGCGGCTGGt                                                                     <  2:2335041/107‑1 (MQ=255)
                                                                                                                    cTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGGCCGCCGCGCTTTCGGTGGCCGTGCGGCTGGt                                                                     >  1:2335041/1‑107 (MQ=255)
                                                                                                                       tCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGGCAGCCGCGCTTTCGGTGGCCGTGCGGATGGTATCGTTTGTGTTGGCTAACAGAGACTTCAGGTTCACAAGGCGAccc                       >  1:1343207/1‑150 (MQ=255)
                                                                                                                        cGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGGCCGCCGCGCTTTCGGTGGCCGTGCGGCTGGTTTCGTTGAGCTTGGCGAACAGAGACTTCAg                                       <  2:2004242/133‑1 (MQ=255)
                                                                                                                        cGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGGCCGCCGCGCTTTCGGTGGCCGTGCGGCTGGTTTCGTTGAGCTTGGCGAACAGAGACTTCAg                                       >  1:2004242/1‑133 (MQ=255)
                                                                                                                         gatgttgtCCAGCACATCAAGCAGCAGGTGATACAGTACCGCATCGTGATGGTTCTCCGACATGCACAGGGCCGCCGCGCGTTCGGTGGCCGTGCAGCTGGTTTCGTTGAGCTTGGCGAACAGAGACTTCAGGTTCACAAGGCGACCCCa                     >  2:392663/3‑150 (MQ=255)
                                                                                                                           tgttgtCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGGCCGCCGCGCTTTCGGTGGCCGTGCGGCTGGTTTCGTTGAGCTTGGCGAACAGAGACTTCAGGTTCACAAGGCGACCCCATc                   <  2:1118145/150‑1 (MQ=255)
                                                                                                                             ttgtCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAgg                                                                                                           <  1:974412/60‑1 (MQ=255)
                                                                                                                             ttgtCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAgg                                                                                                           >  2:974412/1‑60 (MQ=255)
                                                                                                                               gtggAGCACCTGCTGCTGCAGTTGCTCGACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGGCCGCCGCGCTTTCGGTGGCCGTGCGGCTGGTTTCGTTGAGCTTGGCGAACAGAGACTTCAGGTTCACAAGGCGACCCCATCGTaa               <  1:320259/147‑1 (MQ=255)
                                                                                                                               gtggAGCACCTGCTGCTGCAGTTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGGCCGCCGCGCTTTCGGTGGCCGTGCGGCTGGTTTCGTTGAGCTTGGCGAACAGAGACTTCAGGTTCACAAGGCGACCCCATCGTaa               >  1:827925/4‑150 (MQ=255)
                                                                                                                               gtCGAGTAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGGCCGCCGCGCTTTCGGTGGCCGTGCGGCTGGTTTCGTTGAGCTTGGCGAACAGAGACTTCAGGTTCACAAGGCGACCCCATCGTaa               <  2:19357/150‑1 (MQ=255)
                                                                                                                               gtCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGGCCGCCGCGCTTTCGGTGGCCGTGCGGCTGGTTTCGTTGAGCTTGGCGAACAGAGACTTCAGGTTCACAAGGCGACCCCATCGTaa               <  2:19243/150‑1 (MQ=255)
                                                                                                                                  gAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGGCCGCCGCGCTTTCGGTGGCCGTGCGGCTGGTTTCGTTGAGCTTGGCGAACAGAGACTTCAGGTTCACAAGGCGACCCCATCGTaa               <  1:367806/147‑1 (MQ=255)
                                                                                                                                  gAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGGCCGCCGCGCTTTCGGTGGCCGTGCGGCTGGTTTCGTTGAGCTTGGCGAACAGAGACTTCAGGTTCACAAGGCGACCCCATCGTaa               >  2:367806/1‑147 (MQ=255)
                                                                                                                                    gCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGGCCGCCGCGCTTTCGGTGGCCTTGCGGCTGGTTTCGTTGAGCTTGGCGAACAGAGACTTCAGGTTCACAAGGCGACCCCATCGTAAGGAAt          >  1:1333667/1‑150 (MQ=255)
                                                                                                                                          gctgctgcagTTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGGCCGCCGCGCTTTCGGTGGCCGTGCGGCTGGTTTCGTTGAGCTTGGCGAACAGAGACTTCAGGTTCACAAGGCGACCCCATCGTAAGGAATGTGGaa    <  2:827925/144‑1 (MQ=255)
                                                                                                                                          gcagcagcaGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGGCCGCCGCGCTTTCGGTGGCCGTGCGGCTGGTTTCGTTGAGCTTgg                                                       >  1:1319097/1‑99 (MQ=255)
                                                                                                                                          gcagcagcaGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGGCCGCCGCGCTTTCGGTGGCCGTGCGGCTGGTTTCGTTGAGCTTgg                                                       <  2:1319097/99‑1 (MQ=255)
                                                                                                                                          gcagcagcaGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGGCCGCCGCGCTTTCGGTGGCCGTGCGGCTGGTTTCGTTGAGCTTGGCGAACAGAGACTTCAGGTTCACAAGGCGACCCCATCGTAAGGAATGTGGaa    >  1:2048101/1‑150 (MQ=255)
                                                                                                                                          gcagcagcaGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGGCCGCCGCGCTTTCGGTGGCCGTGCGGCTGGTTTCGTTGAGCTTGGCGAACAGAGACTTCAGGTTCACAAGGCGACCCCATCGTAAGGAATGTGGaa    <  1:207536/150‑1 (MQ=255)
                                                                                                                                          gcagcagcaGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGGCCGCCGCGCTTTCGGTGGCCGTGCGGCTGGTTTCGTTGAGCTTGGCGAACAGAGACTTCAGGTTCACAAGGCGACCCCATCGTAAGGAATGTGGaa    <  1:2146427/150‑1 (MQ=255)
                                                                                                                                           cagcagcagGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCTCAGGGCCGCCGCGCTTTCGGTGGCCGTGCGGCTGGTTTCGTTGAGCTTGGCGGACAGAGACTTCAGGTTCACAAGGCGACCCCATCGTAAGGAAGGTGGAAg   >  2:1228310/1‑150 (MQ=255)
                                                                                                                                            agcagcagGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGGCCGCCGCGCTTTCGGTGGCCGTGCGGCTGGTTTCGTTGAGCTTGGCGAACAGAGACTTCAGGTTCACAAGGCGACCCCATCGTAAGGAATGTGGAAGa  <  1:150568/150‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                             
GCGACAGCGCCGGGGTGCGGGTATTACCTTTCTTGAAGGTGCCCAGGGCGGTGACCAGCTGCGCTTGCAGGCGTTCGGCGACGACCTGGTAGTGGCGCAGGATCGGCGCCAGGTCGCTGTCGTTGTTGTCGAGCAACTGCAGCAGCAGGTGCTCCACTTCCACCTCGTAATGGTGCTCCGACAGGCACAGGGCCGCCGCGCTTTCGGTGGCCGTGCGGCTGGTTTCGTTGAGCTTGGCGAACAGAGACTTCAGGTTCACAAGGCGACCCCATCGTAAGGAATGTGGAAGA  >  NC_002947/3491136‑3491425

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑