| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 322,135 | G→A | 18.3% | intergenic (+420/+38) | aguA → / ← PP_0267 | agmatine deiminase/ferric siderophore receptor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 322,135 | 0 | G | A | 18.3% | 216.2 / 41.1 | 104 | intergenic (+420/+38) | aguA/PP_0267 | agmatine deiminase/ferric siderophore receptor |
| Reads supporting (aligned to +/- strand): ref base G (41/44); new base A (6/13); total (47/57) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.12e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.51e-01 | |||||||||||
Only 100 of 107 total aligned reads displayed.
AAACACCATGGAAGCATCAGGGTCAGGACGACCGACCCACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑AGAGGCAGGTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCTGGATCTGCGCCGCACTGGTCGCCGAGCTGTAGTAGGTCTTGTCAGCAATGTTGCTCAAT > NC_002947/321986‑322281 | aaaCACCATGGAAGCATCAGGGTCAGGACGACCGACCCACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCgg > 2:1634278/1‑150 (MQ=255) cacCATGGAAGCATCACGGTCAGGACGACCGACCCACCCGTTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGAGCa < 1:723504/150‑1 (MQ=255) acCATGGAAGCATCAGGGTCAGGACGACCGACCCACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCAt < 1:1658959/150‑1 (MQ=255) aTGGAAGCATCAGGGTCAGGACGACCGACCCACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCt > 2:2227237/1‑150 (MQ=255) aGCATCAGGGTCAGGACGACCGACCCACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGa > 1:485860/1‑150 (MQ=255) aGCATCAGGGTCAGGACGACCGACCCACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGa > 1:1700428/1‑150 (MQ=255) gCATCAGGGTCAGGACGACCGACCCACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGAGCATGCCCGCGa‑a < 2:497778/150‑1 (MQ=255) aTCAGGGTCAGGACGACCGACCCACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑aga < 1:438403/150‑1 (MQ=255) aTCAGGGTCAGGACGACCGACCCACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑aga < 1:1602805/150‑1 (MQ=255) aTCAGGGTCAGGACGACCGACCCACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑aga < 1:127652/150‑1 (MQ=255) aTCAGGGTCAGGACGACCGACCCACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGAGCATGCCCGCGA‑aga < 2:421450/150‑1 (MQ=255) aTCAGGGTCAGGACGACCGACCCACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGAGCATGCCCGCGA‑aga < 2:754404/150‑1 (MQ=255) tCAGGGTCAGGACGACCGACCCACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGAGCATGCCCGCGA‑agag < 1:1315488/150‑1 (MQ=255) tCAGGGTCAGGACGACCGACCCACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGAGCATGCCCGCGA‑agag < 1:1286055/150‑1 (MQ=255) aGGGTCAGGACGACCGACCCACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGAGCATGCCCGCGA‑AGAGGc < 2:1575156/150‑1 (MQ=255) ggTCAGGACGCCCGACCCACCACGTCTGCTTGCCGGGCGATGCCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑AGAGGCAg < 1:21401/150‑1 (MQ=255) ggTCAGGACGACCGACCCACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑AGAGGCAg < 1:2227237/150‑1 (MQ=255) ggTCAGGACGACCGACCCACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑AGAGGCAg < 2:28662/150‑1 (MQ=255) tCAGGACGACCGACCCACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGAGCATGCCcgc > 2:2289294/1‑138 (MQ=255) tCAGGACGACCGACCCACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGAGCATGCCcgc < 1:2289294/138‑1 (MQ=255) accgaccCACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑AGAGGCAGGTACAGGcca > 1:2181408/1‑148 (MQ=255) accgaccCACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCAAAGTGGCACTGATCCAATGCGTTGTTGTGCCTGAGTC‑‑CTCGGGCATGCTCGCGA‑AGAGGCAGGTACAGGCaa < 1:415526/150‑1 (MQ=255) cgaccCACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑AGAGGCAGGTACAGGCAACt > 1:1724934/1‑150 (MQ=255) cgaccCACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑AGAGGCAGGTACAGGCAACt > 2:2233933/1‑150 (MQ=255) accCACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑AGAGGCAGGTACAGGCAACTTa < 2:610927/150‑1 (MQ=255) ccACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑AGAGGCAGGTACAGGCAACTTaaa > 1:330588/1‑150 (MQ=255) cACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑AGAgg < 1:2052424/130‑1 (MQ=255) cACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑AGAgg > 2:2052424/1‑130 (MQ=255) cACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑AGAGGCAGGTACAGGCAACTTaaaa < 2:326926/150‑1 (MQ=255) cACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑AGAGGCAGGTACAGGCAACTTaaaa > 1:326926/1‑150 (MQ=255) cACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTAGCGA‑AGAGGCAGGTACAGGCAACTTaaaa < 1:1245549/150‑1 (MQ=255) cACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCAAGAT‑GAGATATAGGCAGGTACAGGCAACTTaaaa < 1:1881572/150‑1 (MQ=255) acgacgTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑AGAGGCAGGTACAGGCAACTTAAAAt > 2:1773333/1‑150 (MQ=255) gacgTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑AGAGGCAGGTACAGGCAACTTAAAATCa < 2:1711590/150‑1 (MQ=255) gacgTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑AGAGGCAGGTACAGGCAACTTAAAATCa < 2:1850794/150‑1 (MQ=255) cTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGa‑a > 1:2181398/1‑115 (MQ=255) cTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGa‑a < 2:2181398/115‑1 (MQ=255) ttGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑AGAGGCAGGTACAGGCAACTTAAATTCAGAAACTGTa < 1:859022/150‑1 (MQ=255) cGGGCTATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑AGAGGCAGGTACAg < 2:2354409/123‑1 (MQ=255) cGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑aga > 2:33646/1‑112 (MQ=255) cGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑aga < 1:33646/112‑1 (MQ=255) cGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑AGAGGCAGGTACAg > 1:2354409/1‑123 (MQ=255) cGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑AGAGGCAGGTACAGGCAACTTAAAATCAGAAACTGTAg < 1:1039603/147‑1 (MQ=255) cGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑AGAGGCAGGTACAGGCAACTTAAAATCAGAAACTGTAg > 2:1039603/1‑147 (MQ=255) tACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑AGAGGCAGGTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTca < 2:841746/150‑1 (MQ=255) cccccAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑AGAGGCAGGTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTcacc > 2:826681/1‑150 (MQ=255) ccccAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTTTTCGCGGGCATGCTCGCTA‑AGAGGCAGGTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTcacca > 1:282438/1‑150 (MQ=255) cccAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCgg < 1:2122590/86‑1 (MQ=255) cccAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCgg > 2:2122590/1‑86 (MQ=255) cccAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑AGAGGCAGGTACGGGCAACTTAAAATCAGAAACTGTAGCTACCCGGcaccac > 1:1319250/1‑150 (MQ=255) cccAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGACACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑AGAGGCAg > 1:1849779/1‑106 (MQ=255) cccAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGACACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑AGAGGCAg < 2:1849779/106‑1 (MQ=255) ccAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑AGAGGCAGGTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACcaca > 1:1649012/1‑150 (MQ=255) cAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑AGAGGCAGGTACAGGCAACTTAAAATCAGATACTGTAGCTACCCGTCACCACaa < 2:1185638/150‑1 (MQ=255) aaGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑AGAGGCAGGTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAg < 2:242978/150‑1 (MQ=255) ggTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCCCTTGCCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑AGAGGCAGGTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCt < 1:1967758/150‑1 (MQ=255) ggTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑AGAGGCAGGTACAGGCAAc < 2:2296803/111‑1 (MQ=255) gCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGCTCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑AGAGGCAg < 2:1331427/91‑1 (MQ=255) gCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑AGAGGCAg > 1:1331427/1‑91 (MQ=255) aaGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑AGAGGCAGGTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGcc > 1:1141238/1‑150 (MQ=255) cAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑AGAGGCAGGTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCAc > 1:66940/1‑150 (MQ=255) agaTGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑AGAGGCAGGTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCt < 1:173894/132‑1 (MQ=255) agaTGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑AGAGGCAGGTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCt > 2:173894/1‑132 (MQ=255) cAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑AGAGGCAGGTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCTGGATCt < 2:1700428/150‑1 (MQ=255) cAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑AGAGGCAGGTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCTGGATCt < 2:485860/150‑1 (MQ=255) ggCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑AGAGGCAGGTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCTGGATCTgc < 2:1057065/150‑1 (MQ=255) cgcTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑AGAGGCAGGTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCTGGATCTgcgc < 2:1724934/150‑1 (MQ=255) gcTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTc > 2:850228/1‑60 (MQ=255) gcTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTc < 1:850228/60‑1 (MQ=255) tGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑AGAGGCAGGTACa > 2:474405/1‑72 (MQ=255) tGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑AGAGGCAGGTACa < 1:474405/72‑1 (MQ=255) gtgGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑AGAGGCAGGTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCTGGATCTGCGCCGCACTGGTCGcc < 2:2062159/150‑1 (MQ=255) aCTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑AGAGGCAGGTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCTGGATCTGCGCCGCACTGGTCGCCGAGCt > 1:72885/1‑150 (MQ=255) tGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑AGAGGCAGGTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCTGGCTCCGCGCCGCACTGGTCACCGAGCTgt > 1:411247/1‑150 (MQ=255) gATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑AGAGGCAGGTACAGGCAACTTAAAATCAGAAACTGTAGCTAccc < 1:813969/88‑1 (MQ=255) gATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑AGAGGCAGGTACAGGCAACTTAAAATCAGAAACTGTAGCTAccc > 2:813969/1‑88 (MQ=255) gATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑AGAGGCAGGTACAGGCAACTTAAAATCAGAAAATGTAGGTACCCGTCACCAAAAGGCTACGCGGATCGCCCACCTGGATCTGCGCCGCACTGGTCGCCGAGCTGtagtag > 2:566245/1‑150 (MQ=255) cTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑AGAGGCAGGTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCTGGATCTGCGCCGCACTGGTCGCCGAGCTGTAGTAGGTCTTGTc > 2:1746326/1‑150 (MQ=255) cTGCCTCTTCGCGGGCATGCTCGCGA‑AGAGGCAGGTACAGGCAACTTAAAATTAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCTGGATCTGCGCCGCACTGGTCGCCGAGCTGTAGTAGGTCTTGTCAGCAAt > 1:768793/1‑150 (MQ=255) cTGCCTCTTCGCGGGCATGCTCGCGA‑AGAGGCAGGTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCTGGATCTGCGCCGCACTGGTCGCCGAGCTGTAGTAGGTCTTGTCAGCAAt > 2:1643820/1‑150 (MQ=255) tGCCTCTTCGCGGGCATGCTCGCGA‑AGAGGCAGGTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCTGGATCTGCGCCGCACTGGTCGCCGAGCTGTAGTAGGTCTTGTCAGCAAtt > 2:2401234/1‑149 (MQ=255) ccTCTTCGCGGGCATGCTCGCGA‑AGAGGCAGGTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCTGGATCTGCGCCGCACTGGTCGCCGAGCTGTAGTAGGTCTTGTCa > 1:2346335/1‑142 (MQ=255) ccTCTTCGCGGGCATGCTCGCGA‑AGAGGCAGGTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCTGGATCTGCGCCGCACTGGTCGCCGAGCTGTAGTAGGTCTTGTCa < 2:2346335/142‑1 (MQ=255) tctTCGCGAGCATGCCCGCGA‑AGAGGCAGGTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTAcgc > 1:1356034/1‑83 (MQ=255) tctTCGCGAGCATGCCCGCGA‑AGAGGCAGGTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTAcgc < 2:1356034/83‑1 (MQ=255) tctTCGCGAGCATGCCCGCGA‑AGAGGCAGGTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCTGGATCTGCGCCGCACTGGTCGCCGa > 1:1154624/1‑121 (MQ=255) tctTCGCGAGCATGCCCGCGA‑AGAGGCAGGTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCTGGATCTGCGCCGCACTGGTCGCCGa < 2:1154624/121‑1 (MQ=255) ctTCGCGGGCATGCTCGCGA‑AGAGGCAGGTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCTGGATCTGCGCCGCACTGGTCGCCGAGCTGTAGTAGGTCTTGTCAGCAATGTTGCt < 1:878214/150‑1 (MQ=255) ctTCGCGGGCATGCTCGCGA‑AGAGGCAGGTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCTGGATCTGCGCCGCACTGGCCGCCTAGCTGTAGTAGGTCTTGTCAGCAATGTTGCt < 1:1773333/150‑1 (MQ=255) ttCGCGGGCATGCTCGCGA‑AGAGGCAGGTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCTGGATCTGCGCCGCACTGGTCGCCGAGCTGTAGTAGGTCTTGTCAGCAATGTTg < 2:376400/147‑1 (MQ=255) ttCGCGGGCATGCTCGCGA‑AGAGGCAGGTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCTGGATCTGCGCCGCACTGGTCGCCGAGCTGTAGTAGGTCTTGTCAGCAATGTTg > 1:376400/1‑147 (MQ=255) ttCGCGGGCATGCTCGCGA‑AGAGGCAGGTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCTGGATCTGCGCCGCACTGGTCGCCGAGCTGTAGTAGGTCTTGTCAGCAATGTTGCTc < 1:2147408/150‑1 (MQ=255) ttCGCGAGCATGCCCGCGA‑AGAGGCAGGTACAGGCAACTTAAAATCAg < 2:488156/48‑1 (MQ=14) ttCGCGAGCATGCCCGCGA‑AGAGGCAGGTACAGGCAACTTAAAATCAg > 1:488156/1‑48 (MQ=14) ttCGCGAGCATGCCCGCGA‑AGAGGCAGGTACAGGCAACTTAAAATCAg < 2:482952/48‑1 (MQ=14) ttCGCGAGCATGCCCGCGA‑AGAGGCAGGTACAGGCAACTTAAAATCAg > 1:482952/1‑48 (MQ=14) ttCGCGAGCATGCCCGCGA‑AGAGGCAGGTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCTGGATCTGCGCCGCACTGGTCGCCGAGCTGTAGTAGGTCTTGTCAGCAATGTTGCTc > 1:1227797/1‑150 (MQ=255) gcgGGCATGCTCGCGA‑AGAGGCAGGTACAGGCAACTTAAAATCAGAAACTGTAGCTAc < 1:590921/58‑1 (MQ=255) gcgGGCATGCTCGCGA‑AGAGGCAGGTACAGGCAACTTAAAATCAGAAACTGTAGCTAc > 2:590921/1‑58 (MQ=255) gcgGGCATGCTCGCGA‑AGAGGCAGGTACAGGCAACTTAAAATCAGAAACTGATGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCTGGATCTGCGCCGCACTGGTCGCCGAGCTGTAGTAGGTCTTGTCAGCAATGTTGCTCAAt < 2:666140/150‑1 (MQ=255) | AAACACCATGGAAGCATCAGGGTCAGGACGACCGACCCACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCAC‑‑CTGTACCTGCCTCTTCGCGGGCATGCTCGCGA‑AGAGGCAGGTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCTGGATCTGCGCCGCACTGGTCGCCGAGCTGTAGTAGGTCTTGTCAGCAATGTTGCTCAAT > NC_002947/321986‑322281 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |