Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 3,667,710 G→C 6.3% A340A (GCC→GCG)  PP_3231 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029473,667,7100GC 6.3% 304.9 / 8.0 95A340A (GCC→GCG) PP_3231hypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (44/45);  new base C (2/4);  total (46/49)
Fisher's exact test for biased strand distribution p-value = 6.78e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.50e-01

GACAACACATGGCGCAGCTCCTTGCGCTGTGGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTGGCTGCGGCATTGCCGATATGGGAGTTGTGAGCCCAG  >  NC_002947/3667561‑3667857
                                                                                                                                                      |                                                                                                                                                   
gACAACACATGGCGCAGCTCCTTGCGCTGTGGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATcggcg                                                                                                                                                     <  1:1597126/150‑1 (MQ=255)
     cacaTGGCGCAGCTCCTTGCGCTGTGGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCggcggcggc                                                                                                                                                >  2:830152/1‑150 (MQ=255)
      acaTGGCGCAGCTCCTTGCGCTGTGGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGCCACCGACCGCGGcc                                                                                                                                               >  2:1928595/1‑150 (MQ=255)
       caTGGCGCAGCTCCTTGCGCTGTGGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCa                                                                                                                                              >  1:1542169/1‑150 (MQ=255)
        aTGGCGCAGCTCCTTGCGCTGTGGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCAc                                                                                                                                             >  2:2449280/1‑150 (MQ=255)
         tGGCGCAGCTCCTTGCGCTGTGGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCAcc                                                                                                                                            >  1:1813436/1‑150 (MQ=255)
           gcgcAGCTCCTTGCGCTGTGGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTg                                                                                                                                          >  1:669979/1‑150 (MQ=255)
           gcgcAGCTCCTTGCGCTGTGGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTg                                                                                                                                          <  1:1089946/150‑1 (MQ=255)
            cgcAGCTCCTTGCGCTGTGGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTgg                                                                                                                                         <  1:445904/150‑1 (MQ=255)
                  tCCTTGCGCTGTGGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGTGGCCACCTGGCCGcgg                                                                                                                                   >  1:466596/1‑150 (MQ=255)
                   ccTTGCGCTGTGGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGCCACCGACCGCGGCCAGGTGGCcgccgc                                                                                                                                  <  1:1929940/150‑4 (MQ=255)
                   ccTTGCGCTGTGGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGCCACCGACCGCGGCCAGGTGGCcgccgc                                                                                                                                  <  1:1928595/150‑4 (MQ=255)
                    cTTGCGCTGTGGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCACCGACCGCGGCCAGGTGGCcgccgcc                                                                                                                                 >  1:1735207/1‑146 (MQ=255)
                     ttGCGCTGTTGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGcggtcg                                                                                                                                <  1:100683/150‑1 (MQ=255)
                     ttGCGCTGTGGGTCGCGCCAGTCGCTCAGGCAGTCTGGCACGCCTGCGAGGCGGAACTGATCCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGcggtcg                                                                                                                                <  1:1106447/150‑1 (MQ=255)
                     ttGCGCTGTGGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGTCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACGTGGCCGcggtcg                                                                                                                                >  2:1330789/1‑150 (MQ=255)
                     ttGCGCTGTGGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGcggtcg                                                                                                                                >  2:1756849/1‑150 (MQ=255)
                       gcgcTGTGGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACTCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCACCGACCGCGGCCAGGTGGCcgccgccgat                                                                                                                              <  1:1196960/150‑8 (MQ=255)
                       gcgcTGTGGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCACCGACCGCGGCCAGGTGGCcgccgccgat                                                                                                                              <  2:1735207/150‑8 (MQ=255)
                        cgcTGTGGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTg                                                                                                                             <  1:531067/150‑1 (MQ=255)
                         gcTGTGGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCACCGGCGGCGGCCACCTGGCCGCGGTCGGTgg                                                                                                                            <  2:1410501/150‑1 (MQ=255)
                            gtgGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCa                                                                                                                         <  2:1468111/150‑1 (MQ=255)
                             tgGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCAt                                                                                                                        <  2:1813436/150‑1 (MQ=255)
                               ggTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGc                                                                                                                      <  2:535122/150‑1 (MQ=255)
                                  cgcgCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGa                                                                                                                   <  1:1069832/150‑1 (MQ=255)
                                    cgcCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATc                                                                                                                 >  2:490332/1‑150 (MQ=255)
                                     gcCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATc                                                                                                                 >  2:2073863/1‑149 (MQ=255)
                                     gcCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATc                                                                                                                 <  1:2073863/149‑1 (MQ=255)
                                      ccAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCaa                                                                                                               <  1:1442710/150‑1 (MQ=255)
                                       cAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAac                                                                                                              >  2:2265817/1‑150 (MQ=255)
                                         gTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAacac                                                                                                            >  2:1784900/1‑150 (MQ=255)
                                            gCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACcgc                                                                                                         >  1:457057/1‑150 (MQ=255)
                                             cTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACGGATGCTCCCAGCTGACGCGGCGCGAA‑GGTCGGATTACCTTGATCGACATGTCTACGCCCCAGGAATCGCCGGCCGCCACCTGGCCGCGGTCGGTGGCCGTGCCCATCACCACggcg                                                                                                        >  2:1148037/1‑150 (MQ=255)
                                                    aggcTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGcggtcggt                                                                                                                              <  1:2189734/121‑1 (MQ=255)
                                                    aggcTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGcggtcggt                                                                                                                              >  2:2189734/1‑121 (MQ=255)
                                                    aggcTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGcc                                                                                                 <  1:467473/150‑1 (MQ=255)
                                                            aCGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAgcg                                                                                         >  2:1893050/1‑150 (MQ=255)
                                                            aCGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAgcg                                                                                         >  1:1210197/1‑150 (MQ=255)
                                                             cGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGGA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAgcgc                                                                                        >  2:1046545/1‑150 (MQ=255)
                                                                cTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGTGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGc                                                                                     <  2:466596/150‑1 (MQ=255)
                                                                 tGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCg                                                                                    <  1:1893050/150‑1 (MQ=255)
                                                                  gCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAACCCTCGGA‑TTACATGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCgg                                                                                   >  1:2254613/1‑150 (MQ=255)
                                                                  gCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCACCACCGCGTCGTGCCCGAAAGCGCTGCgg                                                                                   <  1:2156282/150‑1 (MQ=255)
                                                                  gCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGAGAC‑GGTCGGTTTTGTCTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCgg                                                                                   >  1:2254669/1‑150 (MQ=255)
                                                                    gAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTg                                                                                                                             >  2:1070622/1‑106 (MQ=255)
                                                                    gAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTg                                                                                                                             <  1:1070622/106‑1 (MQ=255)
                                                                       gCGGAACTGATGCTCCCAGCTGTCGCTGCTCAAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAg                                                                              >  1:2275704/1‑150 (MQ=255)
                                                                            aCTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGc                                                                         <  2:1440227/150‑1 (MQ=255)
                                                                            aCTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTGGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGc                                                                         <  2:993760/150‑1 (MQ=255)
                                                                              tGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCg                                                                       >  2:2300990/1‑150 (MQ=255)
                                                                                aTGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGAt                                                                     >  2:1646811/1‑150 (MQ=255)
                                                                                 tGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATATCGCGTTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATg                                                                    <  2:2275704/150‑1 (MQ=255)
                                                                                   cTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGtt                                                                  <  1:2300990/150‑1 (MQ=255)
                                                                                   cTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGtt                                                                  >  2:1775045/1‑150 (MQ=255)
                                                                                      ccAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAgcgc                                                                                        >  2:423621/1‑125 (MQ=255)
                                                                                      ccAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAgcgc                                                                                        <  1:423621/125‑1 (MQ=255)
                                                                                      ccAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGc                                                                             <  1:1189049/136‑1 (MQ=255)
                                                                                      ccAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGaa                                                               <  2:289744/150‑1 (MQ=255)
                                                                                      ccAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGCGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGc                                                                             >  2:1189049/1‑136 (MQ=255)
                                                                                         gCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTg                                                            <  1:490332/150‑1 (MQ=255)
                                                                                         gCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTg                                                            <  2:1590884/150‑1 (MQ=255)
                                                                                          cTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTgg                                                           <  1:1046545/150‑1 (MQ=255)
                                                                                               gCTGCGCGAA‑GGTCGGATATCCTTGATGTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCttt                                                      >  1:1147178/1‑150 (MQ=255)
                                                                                                cTGCGCGAA‑GGTCGGATTTCCATGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCAGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAGGCTGGCCGATGTTGAACTGGCCTTTc                                                     <  2:1210197/150‑1 (MQ=255)
                                                                                                    gcgAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGc                                                 <  1:1784900/150‑1 (MQ=255)
                                                                                                        a‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCAt                                             >  1:1810489/1‑150 (MQ=255)
                                                                                                           gTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGc                                                                                     >  1:1302235/1‑108 (MQ=255)
                                                                                                           gTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGc                                                                                     <  2:1302235/108‑1 (MQ=255)
                                                                                                            tCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGtt                                                                  <  1:2197124/126‑1 (MQ=255)
                                                                                                            tCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGtt                                                                  >  2:2197124/1‑126 (MQ=255)
                                                                                                            tCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTg                                                            >  2:1386351/1‑132 (MQ=255)
                                                                                                            tCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTg                                                            <  1:1386351/132‑1 (MQ=255)
                                                                                                            tCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCACGAGTCTCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTc                                          >  1:885531/1‑150 (MQ=255)
                                                                                                             cGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGACGATGTTGAACTGGCCTTTCCAGCCCATTTcc                                         <  2:1341412/150‑1 (MQ=255)
                                                                                                                 tttCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAACGCGCTGCCGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTgg                                     >  1:146372/1‑150 (MQ=255)
                                                                                                                     cTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTGGCTGc                                 >  1:1220679/1‑150 (MQ=255)
                                                                                                                     cTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTGGCTGc                                 >  1:1736627/1‑150 (MQ=255)
                                                                                                                      ttGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCa                                                   <  2:2009563/131‑1 (MQ=255)
                                                                                                                      ttGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCa                                                   >  1:2009563/1‑131 (MQ=255)
                                                                                                                      ttGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCAGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTGGCTGCg                                >  1:1634880/1‑150 (MQ=255)
                                                                                                                           cTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTGGCTGCGGCAtt                           >  2:640149/1‑150 (MQ=255)
                                                                                                                              cATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTGGCTGCGGCATTGcc                        <  1:1274152/150‑1 (MQ=255)
                                                                                                                              cATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTGGCGGCGGCATTGcc                        <  1:2265817/150‑1 (MQ=255)
                                                                                                                                    gCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTGGCTGCGGCATTGCCGATATg                  <  1:1756849/150‑1 (MQ=255)
                                                                                                                                    gCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTGGCTGCGGCATTGCCGATATg                  <  1:2100233/150‑1 (MQ=255)
                                                                                                                                        tCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTGGCTGCGGCATTGCCGATATGGGAg              >  2:1557317/1‑150 (MQ=255)
                                                                                                                                         cccAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTGGCTGCGGCATTGCCGATATGGGAGt             >  2:2397945/1‑150 (MQ=255)
                                                                                                                                          ccAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTgg                                                                          <  2:910762/88‑1 (MQ=255)
                                                                                                                                          ccAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTgg                                                                          >  1:910762/1‑88 (MQ=255)
                                                                                                                                          ccAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGc                                                                         <  2:1830491/89‑1 (MQ=255)
                                                                                                                                          ccAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGc                                                                         >  1:1830491/1‑89 (MQ=255)
                                                                                                                                          ccAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTGGCTGCGGCATTGCCGATATGGGNGtt            <  2:1508419/150‑1 (MQ=255)
                                                                                                                                          ccAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTGGCTGCGGCATTGCCGATATGGGAGtt            <  2:582848/150‑1 (MQ=255)
                                                                                                                                              tCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTGGCTGCGGCATTGCCGATATGGGAGTTGTGa        <  1:1775045/150‑1 (MQ=255)
                                                                                                                                                aTCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTGGCTGCGGCATTGCCGATATGGGAGTTGTGAGc      >  1:849623/1‑150 (MQ=255)
                                                                                                                                                 tCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTGGCTGCg                                <  1:130515/123‑1 (MQ=255)
                                                                                                                                                 tCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTGGCTGCg                                >  2:130515/1‑123 (MQ=255)
                                                                                                                                                    gcggcggcCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTGGCTGCGGCATTGCCGATATGGGAGTTGTGAGCCCAg  >  2:42757/1‑150 (MQ=255)
                                                                                                                                                      |                                                                                                                                                   
GACAACACATGGCGCAGCTCCTTGCGCTGTGGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTGGCTGCGGCATTGCCGATATGGGAGTTGTGAGCCCAG  >  NC_002947/3667561‑3667857

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑