Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 3,742,002 A→T 7.1% intergenic (‑27/+386) PP_3305 ← / ← PP_3306 TerC family membrane protein/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029473,742,0020AT 7.1% 209.1 / 6.1 70intergenic (‑27/+386)PP_3305/PP_3306TerC family membrane protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (33/32);  new base T (2/3);  total (35/35)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.29e-01

CCGCGGTGGAGCACACCTAAGTCAAGCGCCAACAGTGTTAGCACAACAGCGAAAAAGGAAAGCCAAAGCCAGAGGTCAGTACCAAGAACGTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTAGAAAACATTTACAAATCTTGTCCATGACAAGCTAAAACGCTTGCAGTGAAAAACTAACT  >  NC_002947/3741854‑3742151
                                                                                                                                                    |                                                                                                                                                     
ccGCGGTGGAGCACACCTAAGTCAAGCGCCAACAGTGTTAGCACAACAGCGAAAAAGGAAAGCCAAAGCCAGAGGTCAGTACCAAGAACGTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGaa                                                                                                                                                      <  1:2095019/150‑1 (MQ=255)
 cgcgGTGGAGCACACCTAAGTCAAGCGCCAACAGTGTTAGCACAACAGCGAAAAAGGAAAGCCAAAGCCAGAGGTCAGTACCAAGAACGTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGaac                                                                                                                                                     <  1:2137063/150‑1 (MQ=255)
 cgcgGTGGAGCACACCTAAGTCAAGCGCCAACAGTGTTAGCACAACAGCGAAAAAGGAAAGCCAAAGCCAGAGGTCAGTACCAAGAACGTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGaac                                                                                                                                                     <  1:2137144/150‑1 (MQ=255)
    ggTGGAGCACACCTAAGTCAAGCGCCAACAGTGTTAGCACAACAGCGAAAAAGGAAAGCCAAAGCCAGAGGTCAGTACCAAGAACGTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGaacaac                                                                                                                                                  <  2:692891/150‑1 (MQ=255)
     gTGGAGCACACCTAAGTCAAGCGCCAACAGTGTTAGCACAACAGCGAAAAAGGAAAGCCAAAGCCAGAGGTCAGTACCAAGAACGTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCGCCTACTGTACATTCAGCTTTGAACAACt                                                                                                                                                 >  2:1879957/1‑150 (MQ=255)
         aGCACACCTAAGTCAAGCGCCAACAGTGTTAGCACAACAGCGAAAAAGGAAAGCCAAAGCCAGAGGTCAGTACCAAGAACGTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCATAGTTGTTCAACTACGa                                                                                                                                             <  2:1763780/150‑1 (MQ=255)
          gCACACCTAAGTCAAGCGCCAACAGTGTTAGCACAACAGCGAAAAAGGAAAGCCAAAGCCAGAGGTCAGTACCAAGAACGTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGAc                                                                                                                                            >  2:340181/1‑150 (MQ=255)
              acCTAAGTCAAGCGCCAACAGTGTTAGCACAACAGCGAAAAAGGAAAGCCAAAGCCAGAGGTCAGTACCAAGAACGTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTAt                                                                                                                                               <  2:208640/143‑1 (MQ=255)
              acCTAAGTCAAGCGCCAACAGTGTTAGCACAACAGCGAAAAAGGAAAGCCAAAGCCAGAGGTCAGTACCAAGAACGTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTAt                                                                                                                                               >  1:208640/1‑143 (MQ=255)
              acCTAAGTCAAGCGCCAACAGTGTTAGCACAACAGCGAAAAAGGAAAGCCAAAGCCAGAGGTCAGTACCAAGAACGTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCg                                                                                                                                        >  2:650894/1‑150 (MQ=255)
              acCTAAGTCAAGCGCCAACAGTGTTAGCACAACAGCGAAAAAGGAAAGCCAAAGCCAGAGGTCAGTACCAAGAACGTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCg                                                                                                                                        >  1:962960/1‑150 (MQ=255)
                cTAAGTCAAGCGCCAACAGTGTTAGCACAACAGCGAAAAAGGAAAGCCAAAGCCAGAGGTCAGTACCAAGAACGTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGa                                                                                                                                             <  1:828572/143‑1 (MQ=255)
                cTAAGTCAAGCGCCAACAGTGTTAGCACAACAGCGAAAAAGGAAAGCCAAAGCCAGAGGTCAGTACCAAGAACGTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGa                                                                                                                                             >  2:828572/1‑143 (MQ=255)
                cTAAGTCAAGCGCCAACAGTGTTAGCACAACAGCGAAAAAGGAAAGCCAAAGCCAGAGGTCAGTACCAAGAACGTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGAc                                                                                                                                      >  2:67087/1‑150 (MQ=255)
                cTAAGTCAAGCGCCAACAGTGTTAGCACAACAGCGAAAAAGGAAAGCCAAAGCCAGAGGTCAGTACCAAGAACGTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGAc                                                                                                                                      >  1:598397/1‑150 (MQ=255)
                              aaCAGTGTTAGCACAACAGCGAAAAAGGAAAGCCAAAGCCAGAGGTCAGTACCAAGAACGTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCATAGTTGTTCAACTACGACta                                                                                                                                          >  1:99280/1‑131 (MQ=255)
                              aaCAGTGTTAGCACAACAGCGAAAAAGGAAAGCCAAAGCCAGAGGTCAGTACCAAGAACGTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCATAGTTGTTCAACTACGACta                                                                                                                                          <  2:99280/132‑2 (MQ=255)
                                 aGTGTTAGCACAACAGCGAAAAAGGAAAGCCAAAGCCAGAGGTCAGTACCAAGAACGTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTc                                                                                                                     >  1:429434/1‑150 (MQ=255)
                                     ttAGCACAACAGCGAAAAAGGAAAGCCAAAGCCAGAGGTCAGTACCAAGAACGTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCagag                                                                                                                 >  2:827494/1‑150 (MQ=255)
                                      tAGCACAACAGCGAAAAAGGAAAGCCAAAGCCAGAGGTCAGTACCAAGAACGTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAgg                                                                                                                <  1:1102169/150‑1 (MQ=255)
                                                  gAAAAAGGAAAGCCAAAGCCAGAGGTCAGTACCAAGAACGTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCa                                                                                                    <  2:1569110/150‑1 (MQ=255)
                                                   aaaaaGGAAAGCCAAAGCCAGAGGTCAGTACCAAGAACGTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCAc                                                                                                   <  2:598397/150‑1 (MQ=255)
                                                     aaaGGAAAGCCAAAGCCAGAGGTCAGTACCAAGAACGTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTAt                                                                                                                                               <  2:540684/104‑1 (MQ=255)
                                                     aaaGGAAAGCCAAAGCCAGAGGTCAGTACCAAGAACGTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTAt                                                                                                                                               >  1:540684/1‑104 (MQ=255)
                                                        ggAAAGCCAAAGCCAGAGGTCAGTACCAAGAACGTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGCATAACCGTCAGAGGGGCCCGGCGTCACGAATa                                                                                              <  2:1866725/150‑1 (MQ=255)
                                                         gAAAGCCAAAGCCAGAGGTCAGTACCAAGAACGTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGaacaac                                                                                                                                                  >  1:1353854/1‑97 (MQ=255)
                                                         gAAAGCCAAAGCCAGAGGTCAGTACCAAGAACGTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGaacaac                                                                                                                                                  <  2:1353854/97‑1 (MQ=255)
                                                          aaagccaaagccAGAGGTCAGTACCAAGAACGTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATaaa                                                                                            <  2:429434/150‑1 (MQ=255)
                                                             gccaaagccaGAGGTCAGTCCCAAGAACGTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCa                                                                                                                    <  1:1116987/123‑1 (MQ=255)
                                                             gccaaagccaGAGGTCAGTACCAAGAACGTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCa                                                                                                                    >  2:1116987/1‑123 (MQ=255)
                                                             gccaaagccaGAGGTCAGTACCAAGAACGTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGaa                                                                                         >  2:184705/1‑150 (MQ=255)
                                                              aacacgccaGAGGTCATTACCAAGAACGTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAAt                                                                                        <  2:1357477/145‑1 (MQ=255)
                                                               caaagccaGAGGTCAGTACCAAGAACGTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCATAGTTGTTCAACTacga                                                                                                                                             >  1:2082691/1‑93 (MQ=255)
                                                               caaagccaGAGGTCAGTACCAAGAACGTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCATAGTTGTTCAACTACGa                                                                                                                                             <  2:2082691/96‑1 (MQ=255)
                                                                aaagccaGAGGTCAGTACCAAGAACGTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAAttt                                                                                      >  2:460178/1‑150 (MQ=255)
                                                                    ccaGAGGTCAGTACCAAGAACGTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCg                                                                                  <  1:841230/150‑1 (MQ=255)
                                                                           tCAGTACCAAGAACGTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGa                                                                           <  1:460178/150‑1 (MQ=255)
                                                                              gTACCAAGAACGTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTa                                                                        >  1:410000/1‑150 (MQ=255)
                                                                              ctACCAAGACGTTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCAc                                                                                                   >  2:605911/2‑123 (MQ=255)
                                                                              ctACCAAGACGTTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCAc                                                                                                   <  1:605911/122‑1 (MQ=255)
                                                                               tACCAAGAACGTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTcc                                                                                                                                         >  1:1462181/1‑84 (MQ=255)
                                                                               tACCAAGAACGTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTcc                                                                                                                                         <  2:1462181/84‑1 (MQ=255)
                                                                               tACCAAGAACGTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCgg                                                                                                                               <  2:2014315/94‑1 (MQ=255)
                                                                               tACCAAGAACGTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCgg                                                                                                                               >  1:2014315/1‑94 (MQ=255)
                                                                                 ccAAGAACGTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGc                                                                     <  2:542795/150‑1 (MQ=255)
                                                                                  cAAGAACGTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCTTTGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCt                                                                    >  1:982345/1‑150 (MQ=255)
                                                                                      aaCGTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCaa                                                                <  2:1441808/150‑1 (MQ=255)
                                                                                      aaCGTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCaa                                                                <  1:67087/150‑1 (MQ=255)
                                                                                         gTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGGCTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTa                                                             <  1:1999893/150‑1 (MQ=255)
                                                                                         gTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTa                                                             >  1:1467118/1‑150 (MQ=255)
                                                                                         gTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTa                                                             >  2:2064911/1‑150 (MQ=255)
                                                                                            ttGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTAGaa                                                          <  2:410000/150‑1 (MQ=255)
                                                                                             tGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTAGaaa                                                         <  1:2064911/150‑1 (MQ=255)
                                                                                              ggTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTAGaaaa                                                        <  1:340181/150‑1 (MQ=255)
                                                                                               gTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTAGAAAAc                                                       >  2:677892/1‑150 (MQ=255)
                                                                                               gTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTAGAAAAc                                                       >  1:1031979/1‑150 (MQ=255)
                                                                                               gTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTAGAAAAc                                                       >  1:848095/1‑150 (MQ=255)
                                                                                                        cGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAGTGGAGAATTTATCGAGCGCGAGTAGGCTGCAAGTAGAAAACATTTaacat                                              <  1:1879957/150‑5 (MQ=255)
                                                                                                            cTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTAGAAAACATTTACAAAt                                             <  1:150858/147‑1 (MQ=255)
                                                                                                            cTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTAGAAAACATTTACAAAt                                             >  2:150858/1‑147 (MQ=255)
                                                                                                                    aGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTAGAAAACATTTACAAATCTTGTCCAt                                    <  1:1490853/148‑1 (MQ=255)
                                                                                                                    aGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTAGAAAACATTTACAAATCTTGTCCAt                                    >  2:1490853/1‑148 (MQ=255)
                                                                                                                    aGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTAGAAAACATTTACAAATCTTGTCCATGa                                  >  2:1489172/1‑150 (MQ=255)
                                                                                                                      aCATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTAGAAAACATTTACAAATCTTGTCCAt                                    <  1:1504527/146‑1 (MQ=255)
                                                                                                                      aCATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTAGAAAACATTTACAAATCTTGTCCAt                                    >  2:1504527/1‑146 (MQ=255)
                                                                                                                        aTGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTAGAAAACATTTACAAATCTTGTCCATGACAAg                              >  1:2116386/1‑150 (MQ=255)
                                                                                                                            gCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTAGAAAACATTTACAAATCTTGTCCATGACAAGCTaa                          >  1:1132155/1‑150 (MQ=255)
                                                                                                                                  cctGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTAGAAAACATTTACAAATCTTGTCCATGACAAGCTAAAACGCt                    <  1:827494/150‑1 (MQ=255)
                                                                                                                                   ctGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTAGAAAACATTTACAAATCTTGTCCATGACAAGCTAAAACGCtt                   >  2:1744813/1‑150 (MQ=255)
                                                                                                                                        taGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGACTAAAGAATTTATCGAGCGCGAGAAGGCTGCAAGTAGAAAACATTTACAAATCTTGTCCATGACAAGCTAAAACGCTTGCAGt              >  1:1155361/1‑150 (MQ=255)
                                                                                                                                             gTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTAGAAAACATTTACAAATCTTGTCCATGACAAGCTAAAACGCTTGCAGTGaaaa         >  2:1630643/1‑150 (MQ=255)
                                                                                                                                              tAGTTGAACACCTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTAGAAAACATTTACAAATCTTGTCCATGACAAGCTAAAACGCTTGCAGTGaaaaa        <  1:839239/150‑1 (MQ=255)
                                                                                                                                              tAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTAGAAAACATTTACAAATCTTGTCCATGATAAGCTAAAACGCTTGCAGTGaaaaa        <  2:185468/150‑1 (MQ=255)
                                                                                                                                              tAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTAGAAAACATTTACAAATCTTGTCCATGACAAGCTAAAACGCTTGCAGTGaaaaa        <  2:1467118/150‑1 (MQ=255)
                                                                                                                                               aGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTAGAAAACATTTACAAATCTTGTCCATGACAAGCTAAAACGCTTGCAGTGAAAaac       <  2:1031979/150‑1 (MQ=255)
                                                                                                                                                   gAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTAGAAAACATTTACAAATCTTGTCCATGACAAGCTAAAACGCTTGCAGTGAAAaactaac   <  1:184705/150‑1 (MQ=255)
                                                                                                                                                    aacaacTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTAGAAAACATTTACAAATCTTGTCCATGACAAGCTAAAACGCTTGCAGTGAAAaactaact  >  2:2117873/1‑150 (MQ=255)
                                                                                                                                                    |                                                                                                                                                     
CCGCGGTGGAGCACACCTAAGTCAAGCGCCAACAGTGTTAGCACAACAGCGAAAAAGGAAAGCCAAAGCCAGAGGTCAGTACCAAGAACGTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTAGAAAACATTTACAAATCTTGTCCATGACAAGCTAAAACGCTTGCAGTGAAAAACTAACT  >  NC_002947/3741854‑3742151

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑