| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,896,135 | C→T | 5.2% | Q218Q (CAG→CAA) | PP_3439 ← | AraC family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,896,135 | 0 | C | T | 5.2% | 342.3 / 5.8 | 115 | Q218Q (CAG→CAA) | PP_3439 | AraC family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (54/55); new base T (3/3); total (57/58) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.83e-01 | |||||||||||
Only 100 of 116 total aligned reads displayed.
TCCTGCAGGAGCGCCCAGGCTAGCGACGGCATTTCTGTAATGCCCCGGTGTCGCCGCCAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCGAGACAGGCCGCAAGCCCCGCAGATGTCCTCGAGGCTGAGCGGGTCACTGCGATGGGC > NC_002947/3895988‑3896284 | tCCTGCAGGAGCGCCCAGGCTAGCGACGGCATTTCTGTAATGCCCCGGTGTCGCCGCCAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTg > 1:801935/1‑150 (MQ=255) aGGAGCGCCCAGGCTAGCGACGGCATTTCTGTAATGCCCCGGTGTCGCCGCCAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCg > 1:1839791/1‑150 (MQ=255) ggAGCGCCCAGGCTAGCGACGGCATTTCTGTGATGCCCCGGTGTCGCCGCCAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCgg < 1:319583/150‑1 (MQ=255) gAGCGCCCAGGCTAGCGACGGCATTTCTGTAATGCCCCGGTGTCGCCGCCAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCggg > 2:354139/1‑150 (MQ=255) ccAGGCTAGCGACGGCATTTCTGTAATGCCCCGGTGTCGCCGCCAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCGGGCGCAGTTGCGccagg > 1:2191928/1‑140 (MQ=255) ccAGGCTAGCGACGGCATTTCTGTAATGCCCCGGTGTCGCCGCCAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCGGGCGCAGTTGCGCCAgg < 2:2191928/143‑1 (MQ=255) gCTAGCGACGGCATTTCTGTAATGCCCCGGTGTCGCCGCCAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCAc < 1:836059/150‑1 (MQ=255) gACGGCATTTCTGTAATGCCCCGGTGTCGCCGCCAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTg > 2:1878149/1‑150 (MQ=255) ggCATTTCTGTAATGCCCCGGTGTCGCCGCCAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCTGTCCAGGTGCACGCGCTGGTc > 2:2396811/1‑150 (MQ=255) ggCATTTCTGTAATGCCCCGGTGTCGCCGCCAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTc < 2:1648550/150‑1 (MQ=255) aTTTCTGTAATGCCCCGGTGTCGCCGCCAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCgg > 2:360438/1‑127 (MQ=255) aTTTCTGTAATGCCCCGGTGTCGCCGCCAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCgg < 1:360438/127‑1 (MQ=255) tttCTGTAATGCCCCGGTGTCGCCGCCAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGc < 1:2261364/150‑1 (MQ=255) ttCTGTAATGCCCCGGTGTCGCCGCCAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCa > 2:60333/1‑150 (MQ=255) tCTGTAATGCCCCGGTGTCGCCGCCAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAg < 2:1050657/150‑1 (MQ=255) tGTAATGCCCCGGTGTCGCCGCCAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGt > 1:1471668/1‑150 (MQ=255) gTAATGCCCCGGTGTCGCCGCCAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTg < 2:2214617/138‑1 (MQ=255) gTAATGCCCCGGTGTCGCCGCCAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTg > 1:2214617/1‑138 (MQ=255) gTAATGCCCCGGTGTCGCCGCCAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTa < 2:1611641/150‑1 (MQ=255) gTAATGCCCCGGTGTCGCCGCCAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTa < 1:1878149/150‑1 (MQ=255) tAATGCCCCGGTGTCGCCGCCAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAg < 1:788144/150‑1 (MQ=255) tCGCCGCCAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGtt > 1:1949836/1‑114 (MQ=255) tCGCCGCCAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGtt < 2:1949836/114‑1 (MQ=255) tCGCCGCCAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGc < 2:1646757/131‑1 (MQ=255) tCGCCGCCAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGc > 1:1646757/1‑131 (MQ=255) tCGCCGCCAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCa > 2:1703842/1‑150 (MQ=255) cgccgcCAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAg < 2:2207530/150‑1 (MQ=255) gccgccAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACgcgc < 2:432237/120‑1 (MQ=255) gccgccAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACgcgc > 1:432237/1‑120 (MQ=255) gccgccAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAgg > 1:357864/1‑150 (MQ=255) ccgccAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCTCCCCACGCGCACCCCTGC‑ATAATTCCGCCCTTTTGCGTCGTCTTCCGTGCCAGTTGCACTCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGc < 2:1463506/150‑1 (MQ=255) cgccAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGcc > 1:1976661/1‑150 (MQ=255) aGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAg > 2:1587157/1‑150 (MQ=255) ggTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGc > 2:1556414/1‑150 (MQ=255) ggTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGc < 2:1839791/150‑1 (MQ=255) gTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCg > 1:213728/1‑150 (MQ=255) tGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTgg < 2:2400299/150‑1 (MQ=255) gTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGc < 2:591194/150‑1 (MQ=255) gTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGc > 1:1277173/1‑150 (MQ=255) tttGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGaa < 2:118987/141‑1 (MQ=255) tttGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGaa > 1:118987/1‑141 (MQ=255) gAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGaaa < 1:1675214/150‑1 (MQ=255) gAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGaaa < 1:1317757/150‑1 (MQ=255) aTGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAgg > 2:571597/1‑150 (MQ=255) tGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGTAAGGc > 2:1628358/1‑150 (MQ=255) tGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGc < 1:621887/150‑1 (MQ=255) tGCCCGCTGCAGGTGTGCCTGATCAGCGAACCAGCCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGc < 1:1830328/150‑1 (MQ=255) tGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTg > 2:2247064/1‑95 (MQ=255) tGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTg < 1:2247064/95‑1 (MQ=255) tGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATc < 2:711959/150‑1 (MQ=255) cAGGGGTGCCTGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAg < 1:1431120/150‑1 (MQ=255) ggTGTGCCTGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGTAAGGCCCGAATCAGGt < 1:1628358/150‑1 (MQ=255) gCCTGATTAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGAc > 2:1359394/1‑150 (MQ=255) ccTGATCAGTGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATgcg > 1:687994/1‑105 (MQ=255) ccTGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAATCGTTGGCGAAAGGCACGAATCAGGTAGGAcc > 2:1144649/1‑150 (MQ=255) ccTGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGAcc > 1:1534594/1‑150 (MQ=255) tGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGTGTTGGCGAAAGGCACGAATCAGGTAGGACCga < 2:801935/150‑1 (MQ=255) tGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCga < 2:213728/150‑1 (MQ=255) tGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCga > 1:774891/1‑150 (MQ=255) tGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCga > 2:794589/1‑150 (MQ=255) tGATCAGCGAACCCGGCCTCCTGTGC‑AACCTCAGAAAATAGGCAAAAATGGACCCACTAAGTCCAAGTCAGGAGGACGCGCTTGTCGATCAGGTGGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCga < 2:1463361/150‑1 (MQ=255) gATCAGCGAACCCGGCCTCCTGTGA‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCGCGCGCTGGTCTAGCAGCGAGGTGTAGGGAAAGAGTCCGAACCGTTTGCGAAAGGCACGAATCAGGTAGGACCgag > 2:663216/1‑150 (MQ=255) aGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGTATTTGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCGAGACAg > 1:166716/1‑150 (MQ=255) gCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCGAGACAgg < 1:1556414/150‑1 (MQ=255) aCCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGa > 2:633997/1‑136 (MQ=255) aCCCCGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGa < 1:633997/136‑1 (MQ=255) ccGGCCTCCTGTGC‑AACTTCAGCAATTGGGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCGAGACAGGCCGCaa < 1:1173264/150‑1 (MQ=255) ccGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCGAGACAGGCCGCaa > 1:1585163/1‑150 (MQ=255) ggCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCGAGACAGGCCGCAAGc > 2:2253377/1‑150 (MQ=255) ggCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCGAGACAGGCCGCAAGc < 1:354139/150‑1 (MQ=255) tcctGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGCAGCGTTGGCGAAAGGCCCGAATCAGGTAGGACCGAGACAGGTCGCCAGccccc > 2:925734/1‑149 (MQ=255) tcctGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCGAGACAGGCCGCAAGCCCCg > 1:472090/1‑150 (MQ=255) tgC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCGGTTGCACGCGCTGGTCTAGCAGGTAGCCAGGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCGAGACAGGCCGCAAGCCCCGCAGAt < 2:2416807/150‑1 (MQ=255) tgC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCCGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCGAGACAGGCCGCAAGCCCCGCAGAt > 1:1634718/1‑150 (MQ=255) ttCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCGAGACAGGCCGCAAGCCCCGCAGATGTCCTc > 1:950515/1‑150 (MQ=255) cAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAAGTCCGAGACAGGCCGCAAGCCCCGCAGATGTCCTCGa < 1:1144649/150‑1 (MQ=255) aGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGACAGGCACGAATCAGGTAGGACCGAGACAAGCCGCAAGCCCCGCAGATGTCCTCCAg > 2:853601/1‑150 (MQ=255) aGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCGAGACAGGCCGCAAGCCCCGCAGATGTCCTCGAg > 2:1976981/1‑150 (MQ=255) aTTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCAc > 1:1122563/1‑97 (MQ=255) aTTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCAc < 2:1122563/97‑1 (MQ=255) aTTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCGAGACAGGCCGCAAGCCCCGCAGATGTCCTCGAGGCTg > 1:1081811/1‑150 (MQ=255) gAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCGAGACAGGCCGCAAGCCCCGCAGATGTCCTCGAGGCTGAGc < 2:1585163/150‑1 (MQ=255) aactggCCCGGGCGCAGTTGCGCCAGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTgg > 2:2320388/5‑84 (MQ=25) aactggCCCGGGCGCAGTTGCGCCAGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTgg < 1:2320388/80‑1 (MQ=25) aactggCCCGGGCGCAGTTGCGCCAGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCGAGACAGGCCGCAAGCCCCGCAGATGTCCTCGAGGCTGAGc > 2:1835804/5‑150 (MQ=255) aGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCGAGACAGGCCGCAAGCCCCGCAGATGTCCTCGAGGCTGAGCg < 1:330817/150‑1 (MQ=255) gCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCGAGACAGGCCGCAAGCCCCGCAGATGTCCTCGAGGCTGAGCgg < 2:1976661/150‑1 (MQ=255) gCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCGAGACAGGCCGCAAGCCCCGCAGATGTCCTCGAGGCTGAGCgg < 1:1587157/150‑1 (MQ=255) ggCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCGAGACAGGCCGCAAGCCCCGCAGATGTCCTCGAGGCTGAGCGGGt < 1:794589/150‑1 (MQ=255) ccTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCGAGACAGGCCGCAAGCCCCGCAGATGTCCTCGAGGCTGAGCGGGTCAc > 2:110165/1‑150 (MQ=255) cTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCGAGACAGGCCGCAAGCCCCGCAGATGTCCTCGAGGCTGAGCGGGTCACt < 1:571597/150‑1 (MQ=255) cTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCGAGACAGGCCGCAAGCCCCGCAGATGTCCTCGAGGCTGAGCGGGTCACt > 2:795374/1‑150 (MQ=255) tGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCGAGACAGGCCGCAAGCCCCGCAGATGTCCTCGAGGCTGAGCGGGTCACTg > 1:1960804/1‑150 (MQ=255) cgcAACTGCGCCTGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCGAGACAGGCCGCAAGCCCCGCAGATGTCCTCGAGGCTGAGCGGGTCACTGCGa < 2:1594732/150‑1 (MQ=255) gcAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCGAGACAGGCCGCAAGCCCCGCAGATGTCCTCGAGGCTGAGCGGGTCACTGc < 1:1757672/147‑1 (MQ=255) gcAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCGAGACAGGCCGCAAGCCCCGCAGATGTCCTCGAGGCTGAGCGGGTCACTGc > 2:1757672/1‑147 (MQ=255) cAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCGAGACAGGCCGCAAGCCCCGCAGATGTCCTCGAGGCTGAGCGGGTCACTGCGATg < 1:795374/150‑1 (MQ=255) aaCTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCgaga > 1:2183777/1‑98 (MQ=255) aaCTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCgaga < 2:2183777/98‑1 (MQ=255) cTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCGAGACAGGCCGCAAGCCCCGCAGATGTCCTCGAGGCTGAGCGGGTCACTGCGATGGgc < 1:568143/150‑1 (MQ=255) | TCCTGCAGGAGCGCCCAGGCTAGCGACGGCATTTCTGTAATGCCCCGGTGTCGCCGCCAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGC‑AACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGCCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCGAGACAGGCCGCAAGCCCCGCAGATGTCCTCGAGGCTGAGCGGGTCACTGCGATGGGC > NC_002947/3895988‑3896284 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |