| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,348,162 | T→G | 5.6% | E173A (GAG→GCG) | PP_3820 ← | group II intron‑encoding maturase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,348,162 | 0 | T | G | 5.6% | 218.3 / 2.9 | 81 | E173A (GAG→GCG) | PP_3820 | group II intron‑encoding maturase |
| Reads supporting (aligned to +/- strand): ref base T (40/35); new base G (3/2); total (44/37) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCGAATAAGCCTGAGTACGCACTTGTCTTTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGATTGACCCGATCGAAAAACTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGT‑CCGAGAACAGTGGGTCGAAGATAGGTGTGAGCTGCTGCTGCAGTGCTTGCTGG > NC_002947/4348017‑4348263 | gcgAATAAGCCTGAGTACGCACTTGTCTTTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGATTGACCCGATCGAAAAACTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGAt < 1:1086182/150‑1 (MQ=32)gcgAATAAGCCTGAGTACGCACTTGTCTTTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGATTGACCCGATCGAAAAACTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGACCGAGCCAGCTCGAt > 2:1877866/1‑150 (MQ=12) aaTAAGCCTGAGTACGCACTTGTCTTTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGATTGACCCGATCGAAAAACTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGc < 1:2371953/150‑1 (MQ=32) aTAAGCCTGAGTACGCACTTGTCTTTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGATTGACCCGATCGAAAAACTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCt < 2:1396848/150‑1 (MQ=32) aTAAGCCTGAGTACGCACTTGTCTTTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGATTGACCCGATACCCGTATTTCTCCAGATTGTGGGCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCt < 1:1485600/150‑1 (MQ=11) tAAGCCTGAGTACGCACTTGTCTTTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGATTGACCCGATCGAAAAACTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCtt > 2:977455/1‑150 (MQ=32) gCCTGAGTACGCACTTGTCTTTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGATTGACCCGATCGAAAAACTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGAt > 2:2057764/1‑150 (MQ=32) cTGAGTACGCACTTGTCTTTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGATTGACCCGATCGAAAAACTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGc < 1:1099587/150‑1 (MQ=32) tGAGTACGCACTTGTCTTTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGATTGACCCGATCGAAAAACTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCg < 2:1556893/150‑1 (MQ=32) aGTACGCACTTGTCGTTGACCCGACGTTCGATGCAGGCCATGAGGATGTCGTGATTGACCCGATCGAAAAACTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTa < 1:301650/150‑1 (MQ=17) aCTTGTCTTTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGATTGCCCCGATCGAAAAACTTCTCAAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGc < 1:1303537/150‑1 (MQ=17) aCTTGTCTTTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGATTGACCCGATCGAAAAACTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGc > 2:1445140/1‑150 (MQ=32) cTTGTCTTTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGATTGACCCGATCGAAAAACTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGa > 2:1791509/1‑128 (MQ=33) cTTGTCTTTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGATTGACCCGATCGAAAAACTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGa < 1:1791509/128‑1 (MQ=33) tttGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGATTGACCCGATCGAAAAACTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGAt < 1:1039720/123‑1 (MQ=33) tttGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGATTGACCCGATCGAAAAACTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGAt > 2:1039720/1‑123 (MQ=33) tttGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGATTGACCCGATCGAAAAACTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACg > 2:1190709/1‑150 (MQ=32) tttGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGATTGACCCGATCGAAAAACTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCGAGATGGCtcgtg > 1:722591/1‑127 (MQ=12) tttGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGATTGACCCGATCGAAAAACTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCGAGATGGCtcgtg < 2:722591/131‑5 (MQ=255) tttGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGATTGACCCGATCGAAAAACTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCACGCTGTCACTTGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACg > 2:1638490/1‑150 (MQ=17) aTCCGACGTTCGATGCAGGCCATGAGGATGTCGTGATTGACCCGATCGAAAAACTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGCCACATGAGCACGAGCCATCTCGATg < 1:1800963/120‑1 (MQ=18) aTCCGACGTTCGATGCAGGCCATGAGGATGTCGTGATTGACCCGATCGAAAAACTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGCCACATGAGCACGAGCCATCTCGATg > 2:1800963/1‑120 (MQ=18) gACGTTCGATGCAGGCCATGAGGATGTCGTGATTGACCCGATCGAAAAACTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCAt > 1:1141798/1‑150 (MQ=32) gACGTTCGATGCAGGCCATGAGGATGTCGTGATTGACCCGATCGAAAAACTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCAt > 1:1557195/1‑150 (MQ=32) gACGTTCGATGCAGGCCATGAGGATGTCGTGATTGACCCGATCGAAAAACTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCAt > 2:751418/1‑150 (MQ=32) aCGTTCGATGCAGGCCATGAGGATGTCGTGATTGACCCGATCGAAAAACTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATa > 2:1670778/1‑150 (MQ=32) gATGCAGGCCATGAGGATGTCGTGATTGACCCGATCGAAAAACTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCCGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTa > 2:2124869/1‑150 (MQ=17) cAGGCCATGAGGATGTCGTGATTGACCCGATCGAAAAACTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGT‑cc < 2:1375134/150‑1 (MQ=32) aGGCCATGAGGATGTCGTGATTGACCCGATCGAAAAACTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGT‑CCg > 1:366977/1‑150 (MQ=32) aGGCCATGAGGATGTCGTGATTGACCCGATCGAAAAACTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGT‑CCg > 1:367339/1‑150 (MQ=32) aGGCCATGAGGATGTCGTGATTGACCCGATCGAAAAACTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACAAGCCATCGAGATGGCtcgtgc < 2:616739/112‑6 (MQ=11) aGGCCATGAGGATGTCGTGATTGACCCGATCGAAAAACTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACAAGCCATCGAGATGGCtcgtgc > 1:616739/1‑107 (MQ=11) ggCCATGAGGATGTCGTGATTGACCCGATCGAAAAACTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGT‑CCga < 1:1445140/150‑1 (MQ=32) ccANGAGGATGTCGTGATTGACCCGATCGAAAAACTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGT‑CCgaga > 2:1511722/1‑150 (MQ=17) cATNAGGATGTCGTGATTGACCCGATCGAAAAACTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGT‑CCGAGaa > 2:1516898/1‑150 (MQ=17) cATGAGGATGTCGTGATTGACCCGATCGAAAAACTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGT‑CCGAGaa > 1:1229474/1‑150 (MQ=32) aTGAGGATGTCGTGATTGACCCGATCGAAAAACTACTGCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGT‑CCGAGAAc > 1:787466/1‑150 (MQ=17) ggATGTCGTGATTGACCCGATCGAAAAACTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGT‑CCGAGAACAGTg < 1:452717/150‑1 (MQ=32) gATGTCGTGATTGACCCGATCGAAAAACTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGT‑CCGAGAACAGTgg < 2:94146/150‑1 (MQ=32) aTGTCGTGATTGACCCGATCGAAAAACTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGT‑CCGAGAACAGTggg < 2:1557195/150‑1 (MQ=32) tGTCGTGATTGACCCGATCGAAAAACTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCt < 2:1474398/130‑1 (MQ=33) tGTCGTGATTGACCCGATCGAAAAACTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCt > 1:1474398/1‑130 (MQ=33) tCGTGATTGACCCGATCGAAAAACTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATg > 2:1102737/1‑90 (MQ=35) tCGTGATTGACCCGATCGAAAAACTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATg < 1:1102737/90‑1 (MQ=35) cGTGATTGACCCGATCGAAAAACTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACCACTTCCACCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGT‑CCGAGAACAGTGGGTCGa > 1:1001797/1‑150 (MQ=11) gTGATTGACCCGATCGAAAAACTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGT‑CCGAGAACAGTGGGTCGaa < 1:977455/150‑1 (MQ=32) gATTGACCCGATCGAAAAACTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGT‑CCGAGAACAGTGGGTCGAAGa < 2:1229474/150‑1 (MQ=32) aTTGACCCGATCGAAAAACTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGT‑CCGAGAACAGTGGGTCGAAGAt > 1:251296/1‑150 (MQ=32) ttGACCCGATCGAAAAACTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGT‑CCGAGAACAGTGGGTCGAAGATa > 1:7803/1‑150 (MQ=32) cccGATCGAAAAACTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGT‑CCGAGAACAGTGGGTCGAAGATAGgtg > 2:1289997/1‑150 (MQ=32) cccGATCGAAAAACTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGT‑CCGAGAACAGTGGGTCGAAGATAGgtg > 2:30912/1‑150 (MQ=32) ccGATCGAAAAACTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGT‑CCGAGAACAGTGGGTCGAAGATAGgtgt < 1:1670778/150‑1 (MQ=32) ccGATCGAAAAACTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGT‑CCGAGAACAGTGGGTCGAAGATAGgtgt > 2:194108/1‑150 (MQ=32) cGATCGAAAAACTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGT‑CCGAGAACAGTGGGTCGAAGATAGGtgtg < 1:1511722/150‑1 (MQ=32) aTCGAAAAACTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGT‑CCGAGAACAGTGGGTCGAAGATAGGTGTGAg > 1:1670449/1‑150 (MQ=32) gAAAAACTTCTCAAGATCGAGTTGCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACAAGCAATCGCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGT‑CCGAGAACAGTGGGTCGAAGAGAGGTGGGAgcgg > 2:1149341/1‑148 (MQ=11) aaaaaCTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGT‑CCga > 2:830715/1‑119 (MQ=33) aaaaaCTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGT‑CCga < 1:830715/119‑1 (MQ=33) aaaaaCTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGT‑CCGAGAACAGTGGGTCGAAGATAGGTGTGAgctgc < 1:2011860/150‑1 (MQ=32) aaaaaCTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGT‑CCGAGAACAGTGGGTCGAAGATAGGTGTGAgctgc < 1:751418/150‑1 (MQ=32) aaaaaCTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGAGGGGTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGT‑CCGAGAACAGTGGGTCGAAGATAGGTGTGAgctgc > 1:1993253/1‑150 (MQ=17) aCTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGT‑CCGAGAACAGTGGGTCGAAGATAGGtgtgg > 1:1922326/1‑140 (MQ=17) aCTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGT‑CCGAGAACAGTGGGTCGAAGATAGGTGTGa < 2:1922326/141‑1 (MQ=32) tctcCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGT‑CCGAGAACAGTGGGTCGAAGATAGGTGTGAGCTGCTGCTGCa < 2:366977/150‑1 (MQ=32) tctcCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGT‑CCGAGAACAGTGGGTCGAAGATAGGTGTGAGCTGCTGCTGCa < 2:367339/150‑1 (MQ=32) tcCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGT‑CCGAGAACAGTGGGTCGAAGATAGGTGTGAGCTGCTGCTGCAGt < 1:30912/150‑1 (MQ=32) ccAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTAc > 1:541874/1‑75 (MQ=34) ccAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTAc < 2:541874/75‑1 (MQ=35) ccAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGT‑CCGAGAACAGTGGGTCGAAGATAGGTGTGAGCTGCTGCTGCAGtg > 2:180503/1‑150 (MQ=32) ccAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGT‑CCGAGAACAGTGGGTCGAAGATAGGTGTGAGCTGCTGCTGCAGtg > 2:1992888/1‑150 (MQ=32) cAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGT‑CCGAGAACAGTGGGTCGAAGATAGGTGTGAGCTGCTGCTGCAGtgc > 2:987662/1‑150 (MQ=32) aGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGT‑CCGAGAACAGTGGGTCGAAGATAGGTGTGAGCTGCTGCTGCAGtgct < 1:1190709/150‑1 (MQ=32) gATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGt < 2:708053/102‑1 (MQ=32) gATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGt > 1:708053/1‑102 (MQ=32) gATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGT‑CCGAGAACAGTGGGTCGAAGATAGGTGTGAGCTGCTGCTGCAGtgctt > 2:1736494/1‑150 (MQ=32) aTCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGT‑CCGAGAACAGt < 2:72185/112‑1 (MQ=32) aTCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGT‑CCGAGAACAGt > 1:72185/1‑112 (MQ=33) aTCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCT‑CAGTGACATTAACAGCGGGTCGAAGAGAGGTGTGAGCTGCTGCTGCAGtgcttg > 2:63238/1‑150 (MQ=11) tCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGT‑CCGAGAACAGTGGGTCGAAGATAGGTGTGAGCTGCTGCTGCAGtgcttgc > 2:2281144/1‑150 (MQ=32) gAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGT‑CCGAGAACAGTGGGTCGAAGATAGGTGTGAGCTGCTGCTGCAGTGCTTGCTg < 1:987662/150‑1 (MQ=32) aGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGT‑CCGAGAACAGTGGGTCGAAGATAGGTGTGAGCTGCTGCTGCAGTGCTTGCTgg < 1:2281144/150‑1 (MQ=31) | GCGAATAAGCCTGAGTACGCACTTGTCTTTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGATTGACCCGATCGAAAAACTTCTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGT‑CCGAGAACAGTGGGTCGAAGATAGGTGTGAGCTGCTGCTGCAGTGCTTGCTGG > NC_002947/4348017‑4348263 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |