Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 5,424,545 C→G 5.2% H32Q (CAC→CAG)  PP_4764 → histone deacetylase family protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,424,5450CG 5.2% 431.0 / 9.7 133H32Q (CAC→CAG) PP_4764histone deacetylase family protein
Reads supporting (aligned to +/- strand):  ref base C (68/58);  new base G (3/4);  total (71/62)
Fisher's exact test for biased strand distribution p-value = 7.05e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.93e-01

Only 100 of 139 total aligned reads displayed.

TGCAGTCACCCGTCATGGCAAGATCAGCACTGGCCCTGATTGCGACCCCATCCATGCCGTTGCCGCTGATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCGCAGCTACATCGAGCGCTACATGAACGGCGAGCTGTCGCGCGAGGACCAGCGCCGCCTCGGC  >  NC_002947/5424397‑5424692
                                                                                                                                                     |                                                                                                                                                    
tGCAGTCACCCGTCATGGCAAGATCAGCACTGGCCCTGATTGCGACCCCATCCATGCCGTTGCCGCTGATCTACCACCAAGATTACAGCCCGGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGaccacc                                                                                                                                                     >  2:1381792/1‑150 (MQ=255)
   aGTCACCCGTCATGGCAAGATCAGCACTGGCCCTGATTGCGACCCCATCCATGCCGTTGCCGCTGATCTACCACGAAGATTACAGCTCGGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTgg                                                                                                                                                  <  2:597814/150‑1 (MQ=255)
     tCACCCGTCATGGCAAGATCAGCACTGGCCCTGATTGCGACCCCATCCATGCCGTTGCCGCTGATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTc                                                                                                                                                <  1:2439650/150‑1 (MQ=255)
     tCACCCGTCATGGCAAGATCAGCACTGGCCCTGATTGCGACCCCATCCATGCCGTTGCCGCTGATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTc                                                                                                                                                >  1:1393827/1‑150 (MQ=255)
       aCCCGTCATGGCAAGATCAGCACTGGCCCTGATTGCGACCCCATCCATGCCGTTGCCGCTGATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCg‑g                                                                                                                                             <  2:307365/150‑1 (MQ=255)
         ccGTCATGGCAAGATCAGCACTGGCCCTGATTGCGACCCCATCCATGCCGTTGCCGCTGATCTACCACGAAGATTACAGCCCGGAGTTCCCTGATCTGGTACCTC‑TCCCGATGGACAAGTTCCGCCTGCTGC‑CGACCAGGTGGTCgtgca                                                                                                                                           >  2:1242099/1‑146 (MQ=255)
         ccGTCATGGCAAGATCAGCACTGGCCCTGATTGCGACCCCATCCATGCCGTTGCCGCTGATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCa                                                                                                                                           <  1:896506/150‑1 (MQ=255)
         ccGTCATGGCAAGATCAGCACTGGCCCTGATTGCGACCCCATCCATGCCGTTGCCGCTGATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAAA‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCa                                                                                                                                           >  2:1544738/1‑150 (MQ=255)
            tCATGGCAAGATCAGCACTGGCCCTGATTGCGACCCCATCCATGCCGTTGCCGCTGATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCg                                                                                                                                        >  2:2301562/1‑150 (MQ=255)
            tCATGGCAAGATCAGCACTGGCCCTGATTGCGACCCCATCCATGCCGTTGCCGCTGATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCCGCTGC‑CGACCAGGTGGTCGTGCAGca                                                                                                                                        <  1:2116403/150‑2 (MQ=255)
             cATGGCAAGATCAGCACTGGCCCTGATTGCGACCCCATCCATGCCGTTGCCGCTGATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCgg                                                                                                                                       <  2:103409/150‑1 (MQ=255)
              aTGGCAAGATCAGCACTGGCCCTGATTGCGACCCCATCCATGCCGTTGCCGCTGATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGNggg                                                                                                                                      <  2:1514765/150‑1 (MQ=255)
                ggCAAGATCAGCACTGGCCCTGATTGCGACCCCATCCATGCCGTTGCCGCTGATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGaccacc                                                                                                                                                     <  2:255938/134‑1 (MQ=255)
                ggCAAGATCAGCACTGGCCCTGATTGCGACCCCATCCATGCCGTTGCCGCTGATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGaccacc                                                                                                                                                     >  1:255938/1‑134 (MQ=255)
                ggCAAGATCAGCACTGGCCCTGATTGCGACCCCATCCATGCCGTTGCCGCTGATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCt                                                                                                                                    <  1:787586/150‑1 (MQ=255)
                 gCAAGATCAGCACTGGCCCTGATTGCGACCCCATCCATGCCGTTGCCGCTGATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTg                                                                                                                                   >  1:1895633/1‑150 (MQ=255)
                  cAAGATCAGCACTGGCCCTGATTGCGACCCCATCCATGCCGTTGCCGCTGATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGa                                                                                                                                  >  2:1469759/1‑150 (MQ=255)
                      aTCAGCACTGGCCCTGATTGCGACCCCATCCATGCCGTTGCCGCTGATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCa                                                                                                                                           >  1:2003018/1‑137 (MQ=255)
                      aTCAGCACTGGCCCTGATTGCGACCCCATCCATGCCGTTGCCGCTGATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCa                                                                                                                                           <  2:2003018/137‑1 (MQ=255)
                      aTCAGCACTGGCCCTGATTGCGACCCCATCCATGCCGTTGCCGCTGATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGaccac                                                                                                                              <  1:2271153/150‑1 (MQ=255)
                         aGCACTGGCCCTGATTGCGACCCCATCCATGCCGTTGCCGCTGATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCCGCTGC‑CGACCAGGTGGTCGTGCAGCAGGcg                                                                                                                                    <  2:621993/141‑2 (MQ=38)
                         aGCACTGGCCCTGATTGCGACCCCATCCATGCCGTTGCCGCTGATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCCGCTGC‑CGACCAGGTGGTCGTGCAGCAGGcg                                                                                                                                    >  1:621993/1‑140 (MQ=38)
                             cTGGCCCTGATTGCGACCCCATCCATGCCGTTGCCGCTGATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAg                                                                                                                       <  2:1767827/150‑1 (MQ=255)
                             cTGGCCCTGATTGCGACCCCATCCATGCCGTTGCCGCTGATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCCGACCACCGACCAg                                                                                                                       <  2:1983685/150‑1 (MQ=255)
                                gCCCTGATTGCGACCCCATCCATGCCGTTGCCGCTGATCTACCACGAAGATGACAGCGAGGCGTTCCCGAGGCAAC‑AAAGCTGCCGGGCGGACATGTGCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGAACACCTACCAGGcc                                                                                                                    >  1:768220/1‑150 (MQ=255)
                                   cTGATTGCGACCCCATCCATGCCGTTGCCGCTGATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTc                                                                                                                                                >  1:221173/1‑120 (MQ=255)
                                    tGATTGCGACCCCATCCATGCCGTTGCCGCTGATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCctgc                                                                                                                >  1:386887/1‑150 (MQ=255)
                                     gATTGCGACCCCATCCATGCCGTTGCCGCTGATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCctgct                                                                                                               <  2:382916/150‑1 (MQ=255)
                                           gACCCCATCCATGCCGTTGCCGCTGATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGccc                                                                                                         >  1:863938/1‑150 (MQ=255)
                                           gACCCCATCCATGCCGTTGCCGCTGATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGccc                                                                                                         >  2:188358/1‑150 (MQ=255)
                                            aCCCCATCCATGCCGTTGCCGCTGATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTgcgacgc                                                                                                        <  1:2301562/150‑5 (MQ=255)
                                             ccccATCCATGCCGTTGCCGCTGATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCgg                                                                                                       >  2:1359397/1‑150 (MQ=255)
                                              cccATCCATGCCGTTGCCGCTGATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGa                                                                                                                                  >  2:1590403/1‑122 (MQ=255)
                                              cccATCCATGCCGTTGCCGCTGATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGa                                                                                                                                  <  1:1590403/122‑1 (MQ=255)
                                               ccatccatGCCGTTGCCGCTGATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGAc                                                                                                     >  1:2325090/1‑150 (MQ=255)
                                                 atccatGCCGTTGCCGCTGATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACAt                                                                                                   <  2:284003/150‑1 (MQ=255)
                                                 atccatGCCGTTGCCGCTGATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCACCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACAt                                                                                                   >  1:1841260/1‑150 (MQ=255)
                                                     atGCCGTTGCCGCTGATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGc                                                                                               <  1:1382436/150‑1 (MQ=255)
                                                     atGCCGTTGCCGCTGATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGc                                                                                               <  1:1359397/150‑1 (MQ=255)
                                                         cGTTGCCGCTGATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCa                                                                                           >  1:1237369/1‑150 (MQ=255)
                                                             gCCGCTGATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGa                                                                                       <  2:1895633/150‑1 (MQ=255)
                                                                gCTGATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCggg                                                                                                                                      <  2:298040/100‑1 (MQ=255)
                                                                gCTGATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCggg                                                                                                                                      >  1:298040/1‑100 (MQ=255)
                                                                gCTGATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGaaa                                                                                     <  1:912897/149‑3 (MQ=255)
                                                                gCTGATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACAt                                                                                    >  1:1252762/1‑150 (MQ=255)
                                                                gCTGATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACAt                                                                                    >  2:2095696/1‑150 (MQ=255)
                                                                       tACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGAc                                                                                                                          >  1:1030134/1‑105 (MQ=255)
                                                                       tACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGAc                                                                                                                          <  2:1030134/105‑1 (MQ=255)
                                                                       tACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGcc                                                                             >  2:2015948/1‑150 (MQ=255)
                                                                           aCGAAGATTACAGCCCGGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTgg                                                                         >  1:2185046/1‑150 (MQ=255)
                                                                                gATTACAGCCCGGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCAt                                                                    <  1:2095696/150‑1 (MQ=255)
                                                                                  ttACAGCCCGGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGa                                                                  <  2:863938/150‑1 (MQ=255)
                                                                                   tACAGCCCGGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGAc                                                                 >  2:2282468/1‑150 (MQ=255)
                                                                                     cAGCCCGGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCggg                                                                                                                                      <  2:2120449/79‑1 (MQ=255)
                                                                                        cccNGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCAAACGACATCCTCGCCCTGGCCCATGACCGCAg                                                            >  2:1497357/1‑150 (MQ=255)
                                                                                         ccGGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGc                                                                                               <  2:883653/114‑1 (MQ=255)
                                                                                         ccGGAGTTCCCCGCTGAAA‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCGCAGc                                                           <  1:1544738/150‑1 (MQ=255)
                                                                                               ttCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCGCAGCTACATc                                                     >  2:276056/1‑150 (MQ=255)
                                                                                                 ccccGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCGGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCGCAGCTACATCGa                                                   >  2:1374320/1‑150 (MQ=255)
                                                                                                  cccGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGcc                                                                                                          <  1:2001317/94‑1 (MQ=255)
                                                                                                  cccGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCGCAGCTACATCGAg                                                  >  1:1683613/1‑150 (MQ=255)
                                                                                                   ccGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGc                                                                        <  2:192774/127‑1 (MQ=255)
                                                                                                   ccGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCGCa                                                             >  2:509601/1‑138 (MQ=255)
                                                                                                   ccGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCGCa                                                             <  1:509601/138‑1 (MQ=255)
                                                                                                   ccGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCGCAGCTACATCGAgc                                                 >  1:1031946/1‑150 (MQ=255)
                                                                                                    cGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCGCAGCTACATCGAgcg                                                >  2:1709491/1‑150 (MQ=255)
                                                                                                      cTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCGCAGCTACATCGAGCGCt                                              <  2:1393827/150‑1 (MQ=255)
                                                                                                      cTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCGCAGCTACATCGAGCGCt                                              >  1:112834/1‑150 (MQ=255)
                                                                                                           c‑acCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCGCAGCTACATCGAGCGCTACATg                                         >  2:973543/1‑150 (MQ=255)
                                                                                                             acCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAAc                                                                                         >  1:106455/1‑101 (MQ=255)
                                                                                                             acCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAAc                                                                                         <  2:106455/101‑1 (MQ=255)
                                                                                                                 cTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCGCAGCTACATCGAGCGCTACATGAACgg                                    <  1:1804468/150‑1 (MQ=255)
                                                                                                                  ttCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCGCAGCTACATCGAGCGCTACATGAACGGc                                   <  2:386887/150‑1 (MQ=255)
                                                                                                                     ccGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCGCAGCTACATCGAGCGCTACATGAACGGCGAg                                <  1:1469759/150‑1 (MQ=255)
                                                                                                                     ccGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCGCAGCTACATCGAGCGCTACATGAACGGCGAg                                <  2:528205/150‑1 (MQ=255)
                                                                                                                      cGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGc                                                                        >  2:1812499/1‑109 (MQ=255)
                                                                                                                      cGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGc                                                                        <  1:1812499/109‑1 (MQ=255)
                                                                                                                        aTGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCGCAGCTACATCGAGCGCTACATGAACGGCGAGCTg                             >  1:348961/1‑150 (MQ=255)
                                                                                                                            aCAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCGCAGCTACATCGAGCGCTACATGAACGGCGAGCTGTcgc                         >  2:1581875/1‑150 (MQ=255)
                                                                                                                             cAAGTTCCGCCTGCTGCACGACCACCTGTTCG‑TCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCTCAACGACATCCTCGCCCTGGCCCATGACCGCAGCTACATCGAGCGCTACATGAACGGCGAGCTGTcgcg                        >  1:2277071/1‑150 (MQ=255)
                                                                                                                              aaGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGAACGACAATACATCGAGCGCTACATGAACGGCGAGCTGTcgcgc                       >  2:1773948/1‑150 (MQ=255)
                                                                                                                                gTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCGCAGCTACATCGAGCGCTACATGAACGGCGAGCTGTCGCGCGa                     <  2:845564/150‑1 (MQ=255)
                                                                                                                                 ttCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCGCGATGACGTCGAGCGCTACATGAACGGCGAGCTGTCGCGCGAg                    >  1:22856/1‑150 (MQ=255)
                                                                                                                                 ttCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCGCAGCTACATCGAGCGCTACATGAACGGCGAGCTg                             >  1:1967883/1‑141 (MQ=255)
                                                                                                                                 ttCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCGCAGCTACATCGAGCGCTACATGAACGGCGAGCTg                             <  2:1967883/141‑1 (MQ=255)
                                                                                                                                 ttCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCGCAGCTACATCGAGCGCTACATGAACGGCGAGCTGTCGCGCGAg                    <  2:2185046/150‑1 (MQ=255)
                                                                                                                                 ttCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCGCAGCTACATCGAGCGCTACATGAACGGCGAGCTGTCGCGCGAg                    <  2:1072261/150‑1 (MQ=255)
                                                                                                                                   ccGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCGCAGCTACATCGAGCGCTACa                                           <  2:1664040/125‑1 (MQ=255)
                                                                                                                                   atgCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCGCAGCTACATCGAGCGCTACa                                           >  1:1664040/3‑125 (MQ=255)
                                                                                                                                    cGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCGCAGCTACATCGAGCGCTACAGGAACGGCGATCTGTCGAGGGCGGAc                 >  2:1084258/1‑150 (MQ=255)
                                                                                                                                     gCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCGCAGCTACATCGAGCGCTACATGAACGGCg                                  <  1:1231799/132‑1 (MQ=255)
                                                                                                                                         gctgcACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCGCAGCTACATCGAGCGCTACATGAACGGCGAGCTGTCGCGCGAGGACCAgcg            >  1:448557/1‑150 (MQ=255)
                                                                                                                                           tgcACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCGCAGCTACATCGAGCGCTACATGAACGGCGa                                 >  1:2225913/1‑127 (MQ=255)
                                                                                                                                           tgcACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCGCAGCTACATCGAGCGCTACATGAACGGCGa                                 <  2:2225913/127‑1 (MQ=255)
                                                                                                                                           tgcACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCGCAGCTACATCGAGCGCTACATGAACGGCGAGCTGTCGCGCGAGGACCAgcgtc          >  2:986333/1‑148 (MQ=255)
                                                                                                                                             cACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCg                                                               >  2:420836/1‑95 (MQ=255)
                                                                                                                                             cACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCg                                                               <  1:420836/95‑1 (MQ=255)
                                                                                                                                                gACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCGCAGCTACATCGAGCGCTACATGAACGGCGAGCTGTCGCGCGa                     <  1:6267/134‑1 (MQ=255)
                                                                                                                                                gACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCGCAGCTACATCGAGCGCTACATGAACGGCGAGCTGTCGCGCGAGGACCAGCGCCGCCTc     >  1:1735871/1‑150 (MQ=255)
                                                                                                                                                   caccTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGCCCGCAGCTACATCGAGCGCTACATGAACGGCGAGCTGTCGCGCGAGGACCAGCGCCGCCTCGGc  <  1:188358/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                    
TGCAGTCACCCGTCATGGCAAGATCAGCACTGGCCCTGATTGCGACCCCATCCATGCCGTTGCCGCTGATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAAC‑ACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCGCAGCTACATCGAGCGCTACATGAACGGCGAGCTGTCGCGCGAGGACCAGCGCCGCCTCGGC  >  NC_002947/5424397‑5424692

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑