Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 495,966 G→C 8.8% A24G (GCC→GGC)  PP_0408 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947495,9660GC 8.8% 304.2 / 18.1 104A24G (GCC→GGC) PP_0408hypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (43/50);  new base C (5/4);  total (50/54)
Fisher's exact test for biased strand distribution p-value = 7.31e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.89e-01

Only 100 of 107 total aligned reads displayed.

GGCACCGGCCTGCAGGGTCTGCTGCTCAGCCTTGGGCAGCAGCCGTTCCAGCGCCAGTGCATCCTCCTGGCTGCGTTCCAGCAAGGGTGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTT  >  NC_002947/495818‑496113
                                                                                                                                                    |                                                                                                                                                   
ggCACCGGCCTGCAGGGTCTGCTGCTCAGCCTTGGGCAGCAGCCGTTCCAGCGCCAGTGCATCCTCCTGGCTGCGTTCCAGCAAGGGTGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCggcggc                                                                                                                                                    <  2:1754650/150‑1 (MQ=255)
     cGGCCTGCAGGGTCTGCTGCTCAGCCTTGGGCAGCAGCCGTTCCAGCGCCAGTGCATCCTCCTGGCTGCGTTCCAGCAAGGGTGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAggg                                                                                                                                               <  2:539216/150‑1 (MQ=255)
        ccTGCAGGGTCTGCTGCTCAGCCTTGGGCAGCAGCCGTTCCAGCGCCAGTGCATCCTCCTGGCTGCGTTCCAGCAAGGGTGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGgcgc                                                                                                                                            <  2:2267758/150‑1 (MQ=255)
         gtGCAGGGTGTGCTGCTCAGCCTTGGGCAGCAGCCGGTCCAGCGCCAGTGCATCCTCCTGGCTGAGGTGGTGTTATGCCGGGCGTGGGGCCTCGGCGGGCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGcc                                                                                                                                           <  2:683407/149‑1 (MQ=255)
         cTGCAGGGTCTGCTGCTCAGCCTTGGGCAGCAGCCGTTCCAGCGCCAGTGCATCCTCCTGGCTGCGTTCCAGCAAGGGTGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGcc                                                                                                                                           >  2:1217041/1‑150 (MQ=255)
           gCAGGGCCTCCTGCGCAGCCTCGGCCCGCTGCCGTTCCGGCGTTGGTGTTTCGGCCGGTCTGCTTTCCTGCAAGGGTGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGCCCTGGCCGCCGa                                                                                                                                         <  2:1103722/150‑1 (MQ=255)
              gggTCTGCTGCTCAGCCTTGGGCAGCAGCCGTTCCAGCGCCAGTGCATCCTCCTGGCTGCGTTCCAGCAAGGGTGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTg                                                                                                                                      <  1:1630757/150‑1 (MQ=255)
              gggTCTGCTGCTCAGCCTTGGGCAGCAGCCGTTCCAGCGCCAGTGCATCCTCCTGGCTGCGTTCCAGCAAGGGTGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGCCCTGGCCGCCGatgc                                                                                                                                      <  2:1351360/150‑4 (MQ=255)
                 tCTGCTGCTCAGCCTTGGGCAGCAGCCGTTCCAGCGCCAGTGCATCCTCCTGGCTGCGTTCCAGCAAGGGTGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGaa                                                                                                                                   <  2:786401/150‑1 (MQ=255)
                 tCTGCTGCTCAGCCTTGGGCAGCAGCCGTTCCAGCGCCAGTGCATCCTCCTGGCTGCGTTCCAGCAAGGGTGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGaa                                                                                                                                   <  1:1217041/150‑1 (MQ=255)
                 tCTGCTGCTCAGCCTTGGGCAGCAGCCGTTCCAGCGCCAGTGCATCCTCCTGGCTGCGTTCCAGCAAGGGTGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGaa                                                                                                                                   <  1:1299153/150‑1 (MQ=255)
                  ctgctgCTCAGCCTTGGGCAGCAGCCGTTCCAGCGCCAGTGCATCCTCCTGGCTGCGTTCCAGCAAGGGTGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCTGCATCGGCGGCCAGGGCGCCGAGTGGAAg                                                                                                                                  <  2:2104362/150‑1 (MQ=255)
                   tgctgcTCAGCCTTGGGCAGCAGCCGTTCCAGCGCCAGTGCATCCTCCTGGCTGCGTTCCAGCAAGGGTGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAgg                                                                                                                                 >  1:1830230/1‑150 (MQ=255)
                     ctgctCAGCCTTGGGCAGCAGCCGTTCCAGCGCCAGTGCATCCTCCTGGCTGCGTTCCAGCAAGGGTGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGAc                                                                                                                               <  1:358010/150‑1 (MQ=255)
                      tgctCAGCCTTGGGCAGCAGCCGTTCCAGCGCCAGTGCATCCTCCTGGCTGCGTTCCAGCAAGGGTGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGAcc                                                                                                                              >  1:185764/1‑150 (MQ=255)
                         tCAGCCTTGGGCAGCAGCCGTTCCAGCGCCCGTGCATCCTCCTGGCTGCGTTCCAGCAAGGGTGGGCGTGGTGCTTCGGCAGCCGGTGCCATGGCATTTGCCGGTGGTTTTTCGGCATCGGCGGCCCGGGTGCCTAGTGCAAGGACCGAg                                                                                                                           <  2:490132/150‑1 (MQ=255)
                         tCAGCCTTGGGCAGCAGCCGTTCCAGCGCCAGTGCATCCTCCTGGCTGCGTTCCAGCAAGGGTGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAg                                                                                                                           <  2:1780922/150‑1 (MQ=255)
                         tCAGCCTTGGGCAGCAGCCGTTCCAGCGCCAGTGCATCCTCCTGGCTGCGTTCCAGCAAGGGTGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAg                                                                                                                           >  2:1428222/1‑150 (MQ=255)
                         tCAGCCTTGGGCAGCAGCCGTTCCAGCGCCAGTGCATCCTCCTGGCTGCGTTCCAGCAAGGGTGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAg                                                                                                                           >  2:108263/1‑150 (MQ=255)
                           aGCCTTGGGCAGCAGCCGTTCCAGCGCCAGTGCATCCTCCTGGCTGCGTTCCAGCAAGGGTGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGc                                                                                                                         >  2:2438652/1‑150 (MQ=255)
                             ccTTGGGCAGCAGCCGTTCCAGCGCCAGTGCATCCTCCTGGCTGCGTTCCAGCAAGGGTGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCTGAGTGGAAGGACCGAGGCCa                                                                                                                       <  1:2452618/150‑1 (MQ=255)
                             ccTTGGGCAGCAGCCGTTCCAGCGCCAGTGCATCCTCCTGGCTGCGTTCCAGCAAGGGTGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCa                                                                                                                       >  1:72042/1‑150 (MQ=255)
                             ccTTGGGCAGCAGCCGTTCCAGCGCCAGTGCATCCTCCTGGCTGCGTTCCAGCAAGGGTGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCa                                                                                                                       <  2:185764/150‑1 (MQ=255)
                             ccTTGGGCAGCAGCCGTTCCAGCGCCAGTGCATCCTCCTGGCTGCGTTCCAGCAAGGGTGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCa                                                                                                                       >  1:1574336/1‑150 (MQ=255)
                             ccTTGGGCAGCAGCCGTTCCAGCGCCAGTGCATCCTCCTGGCTGCGTTCCAGCAAGGGTGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCa                                                                                                                       >  2:687140/1‑150 (MQ=255)
                               ttGGGCAGCAGCCGTTCCAGCGCCAGTGCATCCTCCTGGCTGCGTTCCAGCAAGGGTGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGCGTGGCAGGACCGAGTCCAgg                                                                                                                     >  2:897093/1‑150 (MQ=255)
                                    cagcagCCGTTCCAGCGCCAGTGCATCCTCCTGGCTGCGTTCCAGCAAGGGTGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGgcagca                                                                                                                <  1:1426960/150‑1 (MQ=255)
                                    cagcagCCGTTCCAGCGCCAGTGCATCCTCCTGGCTGCGTTCCAGCAAGGGTGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGgcagca                                                                                                                <  2:1859766/150‑1 (MQ=255)
                                        agcCGTTCCAGCGCCAGTGCATCCTCCTGGCTGCGTTCCAGCAAGGGTGGGCGTGGGGCCTCGGCAGCCGGCGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACAtt                                                                                                            <  2:215263/150‑1 (MQ=255)
                                          ccGTTCCAGCGCCAGTGCATCCTCCTGGCTGCGTTCCAGCAAGGGTGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGc                                                                                                          >  1:1978528/1‑150 (MQ=255)
                                            gTTCCAGCGCCAGTGCATCCTCCTGGCTGCGTTCCAGCAAGGGTGGGCGTGGGGCGTCTGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCa                                                                                                        >  1:293066/1‑150 (MQ=255)
                                            gTTCCAGCGCCAGTGCATCCTCCTGGCTGCGTTCCAGCAAGGGTGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGNGGCCAGNGCGCCGAGTGGANGGACCGAGGCCAGGCAGCACATTGNCa                                                                                                        <  1:2438652/150‑1 (MQ=255)
                                             ttCCAGCGCCAGTGCATCCTCCTGGATGCGTTCCAGCAAGGACGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCCGAATTGGCGTCCAGGGCGCCGAGTTGGAGGACCGAGGCAACGCAGCACAttctcag                                                                                                       >  2:563694/1‑145 (MQ=255)
                                                cAGCGCCAGTGCATCCTCCTGGCTGCGTGCCAGCAAGGGTGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGcgt                                                                                                    <  2:174431/150‑1 (MQ=255)
                                                    gcCAGTGCATCCTACTGGCTGCGTTCCAGCAAGGGTGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTg                                                                                                >  1:1662658/1‑150 (MQ=255)
                                                       aGTTCATCCTCCTGGCTGCGTTACAATCAGGGCGGTTGTGGGGCCTGGGCGGCCGCGCCCATGGCATTTGAAGGTTGTTTTCCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGa                                                                                             <  2:23108/150‑1 (MQ=255)
                                                         tGCATCCTCCTGGCTGCGTTCCAGCAAGGGTGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATa                                                                                           >  2:56870/1‑150 (MQ=255)
                                                           cATCCTCCTGGCTGCGTTCCAGCAAGGGTGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATaaa                                                                                         <  2:1931720/150‑1 (MQ=255)
                                                             tcctccTGGCTGCGTTCCAGCAAGGGTGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGgcag                                                                                                                  <  1:1154283/123‑1 (MQ=255)
                                                             tcctccTGGCTGCGTTCCAGCAAGGGTGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGgcag                                                                                                                  >  2:1154283/1‑123 (MQ=255)
                                                               ctcctGGCTGCGTTCCAGCAAGGGTGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCGCGGCAGCACATTGCCAGCGTCGTGCGATAAAgtgt                                                                                     <  1:2018179/150‑1 (MQ=255)
                                                               ctcctGGCTGCGTTCCAGCAAGGGTGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCATCACATTGCCAGCGTCGTGCGATAAAgtgt                                                                                     <  1:687140/150‑1 (MQ=255)
                                                                  ctGGCTGCGTTCTAGCAAGGGTGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCAGCGGCCACGGCGCCGAGTGGCAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGa                                                                                  <  2:1326022/150‑1 (MQ=255)
                                                                  ctGGCTGCGTTCCAGCAAGGGTGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGa                                                                                  <  2:1332727/150‑1 (MQ=255)
                                                                     gCTGCGTTCCAGCAAGGGTGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGAGCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACAt                                                                               >  1:2108519/1‑150 (MQ=255)
                                                                      cTGCGTTCCAGCAAGGGTGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATg                                                                              >  2:870156/1‑150 (MQ=255)
                                                                         cGTTCCAGCAAGGGTGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGt                                                                           <  1:976528/150‑1 (MQ=255)
                                                                          gTTCCAGCAAGGGTGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTc                                                                          >  1:1286822/1‑150 (MQ=255)
                                                                           ttCCAGCAAGGGTGGGCGTGGGGCCTCGGCGGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTg                                                                                                >  1:1640882/1‑127 (MQ=255)
                                                                           ttCCAGCAAGGGTGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTg                                                                                                <  2:1640882/127‑1 (MQ=255)
                                                                           ttCCAGCAAGGGTGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCa                                                                         >  2:2405697/1‑150 (MQ=255)
                                                                           ttCCAGCAAGGGTGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCa                                                                         >  1:30769/1‑150 (MQ=255)
                                                                           ttCCAGCAAGGGTGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCa                                                                         >  2:1555744/1‑150 (MQ=255)
                                                                             ccAGCAAGGGTGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAgg                                                                                                                     <  1:108289/104‑1 (MQ=255)
                                                                             ccAGCAAGGGTGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAgg                                                                                                                     >  2:108289/1‑104 (MQ=255)
                                                                                  aaGGGTGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCaat                                                                  <  2:525062/150‑2 (MQ=255)
                                                                                  aaGGGTGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAg                                                                  <  2:72042/150‑1 (MQ=255)
                                                                                   aGGGTGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAgg                                                                 <  1:869018/150‑1 (MQ=255)
                                                                                      gTGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCa                                                              <  1:870156/150‑1 (MQ=255)
                                                                                         ggCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGaa                                                           <  2:1662658/150‑1 (MQ=255)
                                                                                              ggggCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGaaa                                                      >  2:932239/1‑150 (MQ=255)
                                                                                                  ccTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGaaa                                                      >  1:2263708/1‑146 (MQ=255)
                                                                                                  ccTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGaaa                                                      <  2:2263708/146‑1 (MQ=255)
                                                                                                  ccTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTGGTTCGGCATCGGGGGCCAGGGCGCGGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAAccag                                                  >  1:947608/1‑148 (MQ=255)
                                                                                                   cTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGc                                                 <  2:2298923/150‑1 (MQ=255)
                                                                                                       gCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAgtgt                                                                                     >  1:1262221/1‑110 (MQ=255)
                                                                                                       gCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAgtgt                                                                                     <  2:1262221/110‑1 (MQ=255)
                                                                                                          gCCGGTGCCATGGCATTTGCAGGTGGTTTTTTTTTTTTTTCGTCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTaa                                          >  2:1938337/1‑150 (MQ=255)
                                                                                                                   aTGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAg                                                                                                                           >  2:2265022/1‑60 (MQ=255)
                                                                                                                   aTGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAg                                                                                                                           <  1:2265022/60‑1 (MQ=255)
                                                                                                                    tGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGc                                >  1:844559/1‑150 (MQ=255)
                                                                                                                     ggCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTTTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGcc                               >  1:1844874/1‑150 (MQ=255)
                                                                                                                     ggCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGcc                               <  2:1830230/150‑1 (MQ=255)
                                                                                                                     ggCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGca                               >  1:190363/1‑149 (MQ=255)
                                                                                                                          ttGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGa                          <  2:1574336/150‑1 (MQ=255)
                                                                                                                              aGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGc                      >  1:794670/1‑150 (MQ=255)
                                                                                                                                gtggtTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCa                    >  2:1098081/1‑150 (MQ=255)
                                                                                                                                gtggtTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCa                    >  2:2162408/1‑150 (MQ=255)
                                                                                                                                gtggtTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCa                    >  1:690801/1‑150 (MQ=255)
                                                                                                                                gtggtTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAAACGGCACCCTAATAGTAGTTGCCCGTGTCGGCCa                    >  2:1098060/1‑150 (MQ=255)
                                                                                                                                gtggtTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGACAGAATGAAACCCGCAGCCTCAGAGCATTGGCTCGTGACGGGCa                    >  2:2358512/1‑150 (MQ=255)
                                                                                                                                gtggtTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCACGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCa                    >  2:1531131/1‑150 (MQ=255)
                                                                                                                                  ggtTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCAtg                  >  2:1058849/1‑150 (MQ=255)
                                                                                                                                   gtTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGATTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCAtgc                 <  2:919402/150‑1 (MQ=255)
                                                                                                                                    tttttCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCAtgct                <  1:1095988/150‑1 (MQ=255)
                                                                                                                                      tttCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCAtgctgc              <  1:1098081/150‑1 (MQ=255)
                                                                                                                                      tttCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCAtgctgc              <  1:1098060/150‑1 (MQ=255)
                                                                                                                                      tttCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCAtgctgc              <  1:2358512/150‑1 (MQ=255)
                                                                                                                                        tgggCATCTGCGGCCAGGGCGCCGAGTTGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCAt            <  2:947608/148‑1 (MQ=255)
                                                                                                                                        tCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCAt            <  1:1754430/150‑1 (MQ=255)
                                                                                                                                         tccactCGGCGCCCTGGCCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATg           >  1:1530037/6‑150 (MQ=255)
                                                                                                                                         cGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCAGCATg           >  1:30554/1‑150 (MQ=255)
                                                                                                                                           cactCGGCGCCCTGGCCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCCTg           >  2:1087429/4‑148 (MQ=255)
                                                                                                                                           cactCGGCGCCCTGGCCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATg           <  1:1087429/145‑1 (MQ=255)
                                                                                                                                            actCGGCGCCCTGGCCGCCGAGTGGAAGGACCGAGGCCAGGCTGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCGGGATGTGAGTGGCCCGTGACGGCCATGCTGCATGGca        >  2:1592251/3‑149 (MQ=255)
                                                                                                                                            actCGGCGCCCTGGCCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGcc        <  2:1530037/148‑1 (MQ=255)
                                                                                                                                            actCGGCGCCCTGGCCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGcc        >  1:113995/3‑150 (MQ=255)
                                                                                                                                            actCGGCGCCCTGGCCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGCCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATCATGCATGGcc        >  1:2243301/3‑150 (MQ=255)
                                                                                                                                                 gcggcCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCAGCATGGCCGTcac   <  1:1428222/150‑3 (MQ=255)
                                                                                                                                                  cggcCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCAGCATGGCCGTcacg  <  2:30554/150‑4 (MQ=255)
                                                                                                                                                    |                                                                                                                                                   
GGCACCGGCCTGCAGGGTCTGCTGCTCAGCCTTGGGCAGCAGCCGTTCCAGCGCCAGTGCATCCTCCTGGCTGCGTTCCAGCAAGGGTGGGCGTGGGGCCTCGGCAGCCGGTGCCATGGCATTTGCAGGTGGTTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTT  >  NC_002947/495818‑496113

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑