| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,564,575 | C→T | 14.4% | intergenic (‑5/+90) | hfq ← / ← miaA | RNA‑binding protein Hfq/tRNA (adenosine(37)‑N6)‑dimethylallyltransferase MiaA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,564,575 | 0 | C | T | 14.4% | 231.4 / 26.4 | 97 | intergenic (‑5/+90) | hfq/miaA | RNA‑binding protein Hfq/tRNA (adenosine(37)‑N6)‑dimethylallyltransferase MiaA |
| Reads supporting (aligned to +/- strand): ref base C (42/40); new base T (8/6); total (50/47) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.77e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.28e-01 | |||||||||||
TTCTTCAGCAATACCACGAACTGGTCGAACGATTCGATCGAGCCCTGCAGTTTGATACCGTTGACCAGGTAAATGGATACCGGGACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAGGCCGCCCCTTCGCAAGAATAGACGGCAATCAGCAGGGACTCAGCTCAATATGGAGATGGCCCCAAGGTATTTCAAGGTGCGGGACAGATTGTCGCAGGC > NC_002947/5564428‑5564724 | ttcttcAGCAATACCACGAACTGGTCGAACGATTCGATCGAGCCCTGCAGTTTGATACCGTTGACCAGGTAAATGGATACCGGGACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGc > 1:2096367/1‑150 (MQ=255) aGCAATACCACGAACTGGTCGAACGATTCGATCGAGCCCTGCAGTTTGATACCGTTGACCAGGTAAATGGATACCGGGACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCt > 1:72766/1‑150 (MQ=255) cAATACCACGAACTGGTCGAACGATTCGATCGAGCCCTGCAGTTTGATACCGTTGACCAGGTAAATGGATACCGGGACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGt < 1:1248300/150‑1 (MQ=255) aaTACCACGAACTGGTCGAACGATTCGATCGAGCCCTGCAGTTTGATACCGTTGACCAGGTAAATGGATACCGGGACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTa < 1:18581/150‑1 (MQ=255) aTACCACGAACTGGTCGAACGATTCGATCGAGCCCTGCAGTTTGATACCGTTGACCAGGTAAATGGATACCGGGACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTaa < 2:224181/150‑1 (MQ=255) aTACCACGAACTGGTCGAACGATTCGATCGAGCCCTGCAGTTTGATACCGTTGACCAGGTAAATGGATACCGGGACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTaa < 1:979712/150‑1 (MQ=255) aTACCACGAACTGGTCGAACGATTCGATCGAGCCCTGCAGTTTGATACCGTTGACCAGGTAAATGGATACCGGGACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTaa < 1:1519493/150‑1 (MQ=255) tACCACGAACTGGTCGAACGATTCGATCGAGCCCTACAGTTTGATACCGTTGACCAGGTAAATGGATACCGGGACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAg < 2:1690713/150‑1 (MQ=255) cACGAACTGGTCGAACGATTCGATCGAGCCCTGCAGTTTGATACCGTTGACCAGGTAAATGGATACCGGGACCTTTTCTTTTATCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCGCTCCTGTAAGGat > 2:1296236/1‑150 (MQ=255) aCGAACTGGTCGAACGATTCGATCGAGCCCTGCAGTTTGATACCGTTGACCAGGTAAATGGATACCGGGACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGata > 1:1335307/1‑150 (MQ=255) aaCTGGTCGAACGATTCGATCGAGCCCTGCAGTTTGATACCGTTGACCAGGTAAATGGATACCGGGACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTCCGGataaat < 2:2313727/150‑1 (MQ=255) aaCTGGTCGAACGATTCGATCGAGCCCTGCAGTTTGATACCGTTGACCAGGTAAATGGATACCGGGACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGataaat < 1:2042445/150‑1 (MQ=255) cTGGTCGAACGATTCGATCGAGCCCTGCAGTTTGATACCGTTGACCAGGTAAATGGATACCGGGACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGataaataa < 2:1335307/150‑1 (MQ=255) tGGTCGAACGATTCGATCGAGCCCTGCAGTTTGATACCGTTGACCAGGTAAATGGATACCGGGACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAaataat > 1:1858549/1‑150 (MQ=255) tGGTCGAACGATTCGATCGAGCCCTGCAGTTTGATACCGTTGACCAGGTAAATGGATACCGGGACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAaataat > 2:592628/1‑150 (MQ=255) tGGTCGAACGATTCGATCGAGCCCTGCAGTTTGATACCGTTGACCAGGTAAATGGATACCGGGACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCATGTACGGataaggaat > 2:1995477/1‑145 (MQ=255) gTCGAACGATTCGATCGAGCCCTGCAGTTTGATACCGTTGACCAGGTAAATGGATACCGGGACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAAATAATAg < 1:579237/150‑1 (MQ=255) gAACGATTCGATCGAGCCCTGCAGTTTGATACCGTTGACCAGGTAAATGGATACCGGGACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAAATAATAGaaa > 1:1602133/1‑150 (MQ=255) gAACGATTCGATCGAGCCCTGCAGTTTGATACCGTTGACCAGGTAAATGGATACCGGGACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAAATAATAGaaa > 2:267029/1‑150 (MQ=255) aaCGATTCGATCGAGCCCTGCAGTTTGATACCGTTGACCAGGTAAATGGATACCGGGACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGAGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAAATAATAGaaaa < 1:16184/150‑1 (MQ=255) aaCGATTCGATCGAGCCCTGCAGTTTGATACCGTTGACCAGGTAAATGGATACCGGGACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGAGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAAATAATAGaaaa > 2:16184/1‑150 (MQ=255) ttCGATCGAGCCCTGCAGTTTGATACCGTTGACCAGGTAAATGGATACCGGGACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTTTTTTTTTTTTTTTTCCTGTAATGATAAATAATAGAAAATCAAt > 2:697901/1‑150 (MQ=255) ttCGATCGAGCCCTGCAGTTTGATACCGTTGACCAGGTAAATGGATACCGGGACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCTGCACTCCTGTAAGGATAAATAATAGAAAATCAAt > 1:1851936/1‑150 (MQ=255) gatcgaGCCCTGCAGTTTGATACCGTTGACCAGGTAAATGGATACCGGGACCTTTTCTTTTCTCAAGGTGTTCAATGAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAAATAATAGAAAATCAATaaa > 2:1045128/1‑150 (MQ=255) aGCCCTGCAGTTTGATACCGTTGACCAGGTAAATGGATACCGGGACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGa < 2:944519/150‑1 (MQ=255) aGCCCTGCAGTTTGATACCGTTGACCAGGTAAATGGATACCGGGACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGa < 2:2066319/150‑1 (MQ=255) gCCCTGCAGTTTGATACCGTTGACCAGGTAAATGGATACCGGGACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCTGCACTCCTGt < 2:2453275/117‑1 (MQ=255) gCCCTGCAGTTTGATACCGTTGACCAGGTAAATGGATACCGGGACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCTGCACTCCTGt > 1:2453275/1‑117 (MQ=255) gCCCTGCAGTTTGATACCGTTGACCAGGTAAATGGATACCGGGACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGAt < 2:2440298/150‑1 (MQ=255) cccTGCAGTTTGATACCGTTGACCAGGTAAATGGATACCGGGACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATa > 2:2187040/1‑150 (MQ=255) aGTTTGATACCGTTGACCAGGTAAATGGATACCGGGACCTTTTCTTCGTGGGAGATGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCTGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAg < 2:63788/150‑1 (MQ=255) gTTTGATACCGTTGACCAGGTAAATGGATACCGGGACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTaa < 1:684426/111‑1 (MQ=255) gTTTGATACCGTTGACCAGGTAAATGGATACCGGGACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTaa > 2:684426/1‑111 (MQ=255) gTTTGATACCGTTGACCAGGTAAATGGATACCGGGACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAgg < 2:1858549/150‑1 (MQ=255) tACCGTTGACCAGGTAAATGGATACCGGGACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCAGTTAAATTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAGGCCGccc < 1:1995477/150‑1 (MQ=255) cGTTGACCAGGTAAATGGATACCGGGACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAGGCCGCCGCtt > 1:84681/1‑150 (MQ=255) cGTTGACCAGGTAAATGGATACCGGGACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAGGCCGCCCCtt > 1:742110/1‑150 (MQ=255) cGTTGACCAGGTAAATGGATACCGGGACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGGGCCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAGGCCGCCCCtt < 2:1319773/150‑1 (MQ=255) ttGACCAGGTAAATGGATACCGGGACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAGGCCGCCCCTTCg < 2:2096367/150‑1 (MQ=255) ccAGGTAAATGGATACCGGGACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAg > 2:1967280/1‑134 (MQ=255) ccAGGTAAATGGATACCGGGACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAg < 1:1967280/134‑1 (MQ=255) cAGGTAAATGGATACCGGGACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAAataata > 2:2258903/1‑107 (MQ=255) cAGGTAAATGGATACCGGGACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAAataata < 1:2258903/107‑1 (MQ=255) aGGTAAATGGATACCGGGACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCTGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAGGCCGCCCCTTCGCAAGaa < 1:2096627/150‑1 (MQ=255) aGGTAAATGGATACCGGGACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAAGGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAGGCCGCCCCTTCGCAAGaa < 2:72766/150‑1 (MQ=255) gTAAATGGATACCGGGACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCCTTTGACATATGCCGCACTCATGTAAGGATAAATAATAGaaaa < 1:771253/109‑1 (MQ=255) gTAAATGGATACCGGGACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCCTTTGACATATGCCGCACTCATGTAAGGATAAATAATAGaaaa > 2:771253/1‑109 (MQ=255) aaaTGGATACCGGGACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAGGCCGCCCCTTCGCAAGAATAGa < 2:1602133/150‑1 (MQ=255) aTGGATACCGGGACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCt > 2:325561/1‑84 (MQ=255) aTGGATACCGGGACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCt < 1:325561/84‑1 (MQ=255) tGGATACCGGGACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAGGCCGCCCCTTCGCAAGAATAGACgg < 1:2187040/150‑1 (MQ=255) tGGATACCGGGACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAGGCCGCCCCTTCGCAAGAATAGACgg < 1:267029/150‑1 (MQ=255) ggATACCGGGACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAGGCCGCCCCTTCGCAAGAATAGACGGc > 2:549100/1‑150 (MQ=255) gATACAGGGACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCTGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAGGCCGCCCCTTCGCAAGAATAGACGGCa > 2:2434759/1‑150 (MQ=255) gggACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAGGCCGCCCCTTCGAAAGACTAGACGGAAATcagc < 2:84681/150‑1 (MQ=255) ggACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAGGCCGCCCCTTCGCAAGAATAGACGGCAATcagca < 1:592628/150‑1 (MQ=255) aCCTTTTCTTTTCTCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAGGCCGCCCCTTCGCAAGAATAGACGGCAATCAGCAgg < 2:229564/150‑1 (MQ=255) ttttcttttcTCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAGGCCGCCCCTTCGCAAGAATAGACGGCAATCAGCAGGGAc > 1:1281270/1‑150 (MQ=255) cttttctCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCTGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAGGCCGCCCCTTCGCAAGAATAGACGGCCATCAGCACCGACTCAg < 2:1851936/150‑1 (MQ=255) cttttctCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAGGCCGCCCCTTCGCaa > 1:2453177/1‑122 (MQ=255) cttttctCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAGGCCGCCCCTTCGCaa < 2:2453177/122‑1 (MQ=255) ttttctCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAGGCCGCCCCTTCGCAAGAATAGACGGCAATCAGCAGGGACTCAGc > 2:1426970/1‑150 (MQ=255) ctcAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAGGCCGCCCCTTCGCAAGAATAGACGGCAATCAGCAGGGACTCAGCTCaa > 1:771014/1‑150 (MQ=255) tcAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCTGCACTCCTGTAAGGATAaataat > 1:887629/1‑74 (MQ=255) tcAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCTGCACTCCTGTAAGGATAaataat < 2:887629/74‑1 (MQ=255) tcAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAg < 2:1804473/101‑1 (MQ=255) tcAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAg > 1:1804473/1‑101 (MQ=255) tcAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAGGCCGCCCCTTCGCAAGAATAGACGGCAATCAGCAGGGACTCa > 2:1230553/1‑143 (MQ=255) tcAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAGGCCGCCCCTTCGCAAGAATAGACGGCAATCAGCAGGGACTCa < 1:1230553/143‑1 (MQ=255) cAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGataaa < 2:2078306/69‑1 (MQ=255) cAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGataaa > 1:2078306/1‑69 (MQ=255) aaGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAGGCCGCCCCTTc > 1:247240/1‑110 (MQ=255) aaGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAGGCCGCCCCTTc < 2:247240/110‑1 (MQ=255) aaGTAAGGGCCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGa > 1:1894761/1‑82 (MQ=255) aaGTAAGGGCCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGa < 2:1894761/82‑1 (MQ=255) gTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAGGCCGCCCCTTCGCAAGAATAGACGGCAATCAGCAGGGACTCAGCTCAATATGGAGATGGccc > 1:1954794/1‑150 (MQ=255) ggTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAGGCCGCCCCTTCGCAAGAATAGACGGCAATCAGCAGGGACTCAGCTCAATATGGAGATg > 1:916841/1‑141 (MQ=255) ggTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAGGCCGCCCCTTCGCAAGAATAGACGGCAATCAGCAGGGACTCAGCTCAATATGGAGATg < 2:916841/141‑1 (MQ=255) tCTTGTAGCGAATGCCCTTTTGACATATGCTGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAGGCCGCCCCTTCGCAAGAATAGACGGCAATCAGCAGGGACTCAGCTCAATATGGAGATGGCCCCAAGGTa > 2:1725530/1‑150 (MQ=255) tCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAATGATAAATAATAGAAAATCAATAAAATCGATAAATTAGGCCGCCCCTTCGCAAGAATAGACGGCAATcagcag > 1:1495789/1‑116 (MQ=255) tCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAGGCCGCCCCTTCGCAAGAATAGACGGCAATcagcag < 2:1495789/116‑1 (MQ=255) gTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAGGCCGCCCCTTCGCAAGAATAGACGGCAATCAGCAGGGACTCAGCTCAATATGGAGATGGCCCCAAGGTATTTc > 2:444633/1‑150 (MQ=255) tAGCGAATGCCCTTTTGACATATGCTGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAGGCCGCCCCTTCGCAAGAATAGACGGCAATcagcag > 2:2243607/1‑111 (MQ=255) tAGCGAATGCCCTTTTGACATATGCTGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAGGCCGCCCCTTCGCAAGAATAGACGGCAATcagcag < 1:2243607/111‑1 (MQ=255) tAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAGGCCGCCCCTTCGCAAGAATAGACGGCAATCAGCAGGGACTCAGCTAAATATGGAGAAGTCCCCAAGGTATTTCa > 1:525916/1‑150 (MQ=255) tcGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAGGCCGCCCCTTCGCAAGAATAGACGGCAATCAGCAGGGACTCAGCTCAATATGGAGATGGCCCCAAGGTATTTCAAg > 1:2179783/2‑150 (MQ=255) gCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGCTAAATTAGGCCGCCCCTTCGCAAGAATAGACGGCAATCAGCAGGGACTCAGCTCAATATGGAGATGGCCCCAAGGTATTTCAAg > 1:51322/1‑150 (MQ=255) aaTGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAGGCCGCCCCTTCGCAAGAATAGACGGCAATCAGCAGGGACTCAGCTCaa > 1:1611691/1‑119 (MQ=255) aaTGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAGGCCGCCCCTTCGCAAGAATAGACGGCAATCAGCAGGGACTCAGCTCaa < 2:1611691/119‑1 (MQ=255) tGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAGGCCGCCCCTTCGCAAGAATAGACGGCAATCAGCAGGGACTCAGCTCAATATGGAGATGGCCCCAAGGTATTTCAAGGTGCg < 2:742110/150‑1 (MQ=255) ccTTTTGACATATGCCGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAGGCCGCCCCTTCGCAAGAATAGACGGCAATCAGCAGGGACTCAGCTCAATATGGAGATGGCCCCAAGGTATTTCAAGGTGCGGGa > 1:1915926/1‑150 (MQ=255) ttttGACATATGCCGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAGGCCGCCCCTTCGCAAGAATAGACGGCAATCAGCAGGGACTCAGCTCAATATGGAGATGGCCCCAAGGTATTTCAAGGTGCGGGACa < 1:1426970/150‑1 (MQ=255) aCATATGCCGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAGGCCGCCCCTTCGCAAGAATAGACGGCAATCAGCAGGGACTCAGCTCAATATGGAGATGGCCCCAAGGTATTTCAAGGTGCGGGACAGATTg > 2:1953260/1‑150 (MQ=255) aCATATGCCGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAGGCCGCCCCTTCGCAAGAATAGACGGCAATCAGCAGGGACTCAGCTCAATATGGAGATGGCCCCAAGGTATTTCAAGGTGCGGGACAGATTg > 1:1647111/1‑150 (MQ=255) atatGCTGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAGGCCGCCCCTTCGCAAGAATAGACGGCAATCAGCAGGGACTCAGCTCAATATGGAGATGGCCCCAAGGTATTTCAAGGTGCGGGACAGATTGTc > 2:1697547/1‑150 (MQ=255) atatGCCGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAGGCCGCCCCTTCGCAAGAATAGACGGCAATCAGCAGGGACTCAGCTCAATATGGAGATGGCCCCAAGGTATTTCAAGGTGCGGGACGGATTGTc > 1:642422/1‑150 (MQ=255) tatGCCGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAGGCCGCCCCTTCGCAAGAATAGACGGCAATCAGCAGGGACTCAGCTCAATATGGAGATGGCCCCAAGGTATTTCAAGGTGCGGGACAGATTGTCg > 2:1923653/1‑150 (MQ=255) ccGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAGGCCGCCCCTTCGCAAGAATAGACGGCAATCAGCAGGGACTCAGCTCAATATGGAGATGGCCCCAAGGTATTTCAAGGTGCGGGACAGATTGTCGcagg > 2:67990/1‑150 (MQ=255) cGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAGGCCGCCCCTTCGCAAGAATAGACGGCAATCAGCAGGGACTCAGCTCAATATGGAGATGGCCCCAAGGTATTTCAAGGTGCGGGACAGATTGTCGcaggc < 2:771014/150‑1 (MQ=255) | TTCTTCAGCAATACCACGAACTGGTCGAACGATTCGATCGAGCCCTGCAGTTTGATACCGTTGACCAGGTAAATGGATACCGGGACCTTTTCTTTTCTCAAGGTGTTCAAGTAAGGGTCTTGTAGCGAATGCCCTTTTGACATATGCCGCACTCCTGTAAGGATAAATAATAGAAAATCAATAAAATCGATAAATTAGGCCGCCCCTTCGCAAGAATAGACGGCAATCAGCAGGGACTCAGCTCAATATGGAGATGGCCCCAAGGTATTTCAAGGTGCGGGACAGATTGTCGCAGGC > NC_002947/5564428‑5564724 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |