| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,699,806 | C→T | 5.3% | D76D (GAC→GAT) ‡ | phaA → | poly(3‑hydroxyalkanoate) polymerase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,699,806 | 0 | C | T | 5.3% | 275.3 / 3.0 | 93 | D76D (GAC→GAT) ‡ | phaA | poly(3‑hydroxyalkanoate) polymerase |
| Reads supporting (aligned to +/- strand): ref base C (43/45); new base T (2/3); total (45/48) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.70e-01 | |||||||||||
CGCAAGGACCTGTTGAGCTCGGCACGCACCGTGCTGCGCCAGGCCGTGCGCCAACCGCTGCACAGCGCCAAGCATGTGGCTCACTTTGGCCTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAACCTACCTGGCCTGGCGCAAGGA‑GCTGCAGGACTGGGTGAGCAGCAGCGACCTGTCCCCCCAGGACATCAGCCGCGGCCAGTTCGTCATCAA > NC_002947/5699660‑5699955 | cgcAAGGACCTGTTGAGCTCGGCACGCACCGTGCTGCGCCAGGCCGTGCGCCAACCGCTGCACAGCGCCAAGCATGTGGCTCACTTTGGCCTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGt < 2:2137290/150‑1 (MQ=255) gcAAGGACCTGTTGAGCTCGGCACGCACCGTGCTGCGCCAGGCCGTGCGCCAACCGCTGCACAGCGCCAAGCATGTGGCTCACTTTGGCCTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTc < 1:100630/150‑1 (MQ=255) aaGGACCTGTTGAGCTCGGCACGCACCGTGCTGCGCCAGGCCGTGCGCCAACCGCTGCACAGCGCCAAGCATGTGGCTCACTTTGGCCTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGc > 1:322795/1‑150 (MQ=255) aaGGACCTGTTGAGCTCGGCACGCACCGTGCTGCGCCAGGCCGTGCGCCAACCGCTGCACAGCGCCAAGCATGTGGCTCACTTTGGCCTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGc > 1:322987/1‑150 (MQ=255) aGGACCTGTTGAGCTCGGCACGCACCGTGCTGCGCCAGGCCGTGCGCCAACCGCTGCACAGCGCCAAGCATGTGGCTCACTTTGGCCTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCt < 2:322987/150‑1 (MQ=255) aGGACCTGTTGAGCTCGGCACGCACCGTGCTGCGCCAGGCCGTGCGCCAACCGCTGCACAGCGCCAAGCATGTGGCTCACTTTGGCCTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCt < 2:322795/150‑1 (MQ=255) ggACCTGTTGAGCTCGGCACGCACCGTGCTGCGCCAGGCCGTGCGCCAACCGCTGCACAGCGCCAAGCATGTGGCCCACTTTGGCCTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCtt < 1:726015/150‑1 (MQ=255) gACCTGTTGAGCTCGGCACGCACCGTGCTGCGCCAGGCCGTGCGCCAACCGCTGCACAGCGCCAAGCATGTGGCTCACTTTGGCCTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGGTCGTCGCtgt < 1:622416/150‑3 (MQ=255) cccTGTTGAGCTCGGCACGCACCGTGCTGCGCCAGGCCGTGCGCCAACCGCTGCACAGCGCCAAGCATGTGGCTCACTTTGGCCTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGGTCGTCGCtgtc < 1:1028092/149‑4 (MQ=255) ccTGTTGAGCTCGGCATGCACCGTGCTGCGCCAGGCCGTGCGCCAACCGCTGCACAGCGCCAAGCATGTGGCTCACTTTGGCCTGGAGCTGAAGACCGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCaa < 2:1218635/150‑1 (MQ=255) ccTGTTGAGCTCGGCACGCACCGTGCTGCGCCAGGCCGTGCGCCAACCGCTGCACAGCGCCAAGCATGTTGGTGACTTTGGCCTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCaa < 1:2252293/150‑1 (MQ=255) tGTTGAGCTCGGCACGCACCGTGCTGCGCCAGGCCGTGCGCCAACCGCTGCACAGCGCCAAGCATGTGGCTCACTTTGGCCTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATg > 1:668263/1‑150 (MQ=255) gTTGAGCTCGGCACGCACCGTGCTGCGCCAGGCCGTGCGCCAACCGCTGCACAGCGCCAAGCATGTGGCTCACTTTGGCCTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGt > 2:2412739/1‑139 (MQ=255) gTTGAGCTCGGCACGCACCGTGCTGCGCCAGGCCGTGCGCCAACCGCTGCACAGCGCCAAGCATGTGGCTCACTTTGGCCTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGt < 1:2412739/139‑1 (MQ=255) cTCGGCACGCACCGTGCTGCGCCAGGCCGTGCGCCAACCGCTGCACAGCGCCAAGCATGTGGCTCACTTTGGCCTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGc > 2:2166771/1‑150 (MQ=255) ggCACGCACCGTGCTGCGCCAGGCCGTGCGCCAACCGCTGCACAGCGCCAAGCATGTGGCTCACTTTGGCCTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTg < 1:1723313/150‑1 (MQ=255) ggCACGCACCGTGCTGCGCCAGGCCGTGCGCAAACCGCTGCACAGCGCCAAGCATGTGGCTCACTTTGGCCTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTg > 1:653846/1‑150 (MQ=255) cacgcacCGTGCGGCGCCAGGCCGTTCTCCAACCGCTGCACAGCGCCAAGCATGTGGCTCACTTTGGCCTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGa < 2:736238/150‑1 (MQ=255) acgcacCGTGCTGCGCCAGGCCGTGCGCCAACCGCTGCACAGCGCCAAGTATGTGGCTCACTTTGGCCTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAg < 2:8891/150‑1 (MQ=255) acgcacCGTGCTGCGCCAGGCCGTGCGCCAACCGCTGCACAGCGCCAAGCATGTGGCTCACTTTGGCCTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAg < 2:1991290/150‑1 (MQ=255) acCGTGCTGCGCCAGGCCGTGCGCCAACCGCTGCACAGCGCCAAGCATGTGGCTCACTTTGGCCTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGcaac > 2:633026/1‑150 (MQ=255) gcgcCAGGACGTGCGCCAACCGCTGCACAGCGCCAAGCATGTGGCTCACTTTGGCCTGGCGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCt < 1:1595545/150‑1 (MQ=255) cgcCAGGCCGTGCGCCAACCGCTGCACAGCGCCAAGCATGTGGCTCACTTTTGCCTGGAGCTGAAGAACGTGTTGCTGTGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTg < 1:1121340/150‑1 (MQ=255) ccAGGCCGTGCGCCAACCGCTGCACAGCGCCAAGCATGTGGCTCACTTTGGCCTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACAACCGTCGCTTCAATGACCCg > 1:2014763/1‑127 (MQ=255) ccAGGCCGTGCGCCAACCGCTGCACAGCGCCAAGCATGTGGCTCACTTTGGCCTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACAACCGTCGCTTCAATGACCCg < 2:2014763/127‑1 (MQ=255) gCCGTGCGCCAACCGCTGCACAGCGCCAAGCATGTGGCTCACTTTGGCCTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTAccgc < 2:1460959/150‑1 (MQ=255) ccGTGCGCCAACCGCTGCACAGCGCCAAGCATGTGGCTCACTTTGGCCTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTAccgcc > 1:2313184/1‑150 (MQ=255) cGTGCGCCAACCGCTGCACAGCGCCAAGCATGTGGCTCACTTTGGCCTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTAccgccg > 2:1371735/1‑150 (MQ=255) cgcCAACCGCTGCACAGCGCCAAGCATGTGGCTCCCTTTGGCCTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTAc < 2:2232023/150‑1 (MQ=255) ccAACCGCTGCACAGCGCCAAGCATGTGGCTCACTTTGGCCTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCt > 1:1506741/1‑150 (MQ=255) cAACCGCTGCACAGCGCCAAGCATGTGGCTCACTTTGGCCTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTg > 1:251083/1‑150 (MQ=255) ccGCTGCACAGCGCCAAGCATGTGGCTCACTTTGGCCTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCaa > 2:476058/1‑150 (MQ=255) cGCTGCACAGCGCCAAGCATGTGGCTCACTTTGGAATGGAACGGGAGAACGTGTGGCTGGGCAAATCAAGCCGGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCaaa > 1:1354986/1‑150 (MQ=255) gCTGCACAGCGCCAAGCATGTGGCTCACTTTGGCCTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAac > 2:228546/1‑150 (MQ=255) cTGCACAGCGCCAAGCATGTGGCTCACTTTGGCCTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAacc < 1:2002035/150‑1 (MQ=255) cacaGCGCCAAGCATGTGGCTCACTTTGGCCTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAacctac < 1:1418775/150‑1 (MQ=255) cacaGCGCCAAGCATGTGGCTCACTTTGGCCTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAacctac < 1:633026/150‑1 (MQ=255) acaGCGCCAAGCATGTGGCTCACTTTGGCCTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAacctacc > 2:876382/1‑150 (MQ=255) acaGCGCCAAGCATGTGGCTCACGTTGGCCTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAacctacc > 2:2041951/1‑150 (MQ=255) caGCGCCAAGCATGTGGCTCACTTTGGCCTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGGTCGTCGCtgt < 2:2359745/94‑3 (MQ=255) caGCGCCAAGCATGTGGCTCACTTTGGCCTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGGTCGTCGCtgt > 1:2359745/1‑92 (MQ=255) caGCGCCAAGCATGTGGCTCACTTTGGCCTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAaccgaccg < 2:691877/150‑2 (MQ=255) cgcCAAGCATGTGGCTCACTTTGGCCTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAg > 1:2040556/1‑108 (MQ=255) cgcCAAGCATGTGGCTCACTTTGGCCTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAg < 2:2040556/108‑1 (MQ=255) gcCAAGCATGTGGCTCACTTTGGCCTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAACCTAcctggcc > 1:1342266/1‑150 (MQ=255) cAAGCATGTGGCTCACTTTGGCCTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTa > 2:2094333/1‑129 (MQ=255) cAAGCATGTGGCTCACTTTGGCCTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTa < 1:2094333/129‑1 (MQ=255) aTGTGGCTCACTTTGGCCTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGACATTAG‑CAGGGTACGGCCGTCGATTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAACCTACCTGGCCTGGCGCa < 1:168205/150‑1 (MQ=255) gCTCACTTTGGCCTGGAGCTGAAGAACGTGTTGCTGGGCAACTCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTAc < 2:2345359/120‑1 (MQ=255) gCTCACTTTGGCCTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCg < 2:804269/71‑1 (MQ=255) gCTCACTTTGGCCTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCg > 1:804269/1‑71 (MQ=255) gCTCACTTTGGCCTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTAc > 1:2345359/1‑120 (MQ=255) tCACTTTGGCCTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAACCTACCTGGCCTGGCGCAAGGA‑GCt > 1:1791348/1‑150 (MQ=255) cTTTGGCCTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAACCTACCTGGCCTGGCGCAAGGA‑GCTGCa > 2:1236761/1‑150 (MQ=255) tttGGCCTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAACCTACCTGGCCTGGCGCAAGGA‑GCTGCAg < 2:1342266/150‑1 (MQ=255) gCCTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAACCTACCTGGCCTGGCGCAAGGA‑GCTGCAGGACt < 1:2166771/150‑1 (MQ=255) ccTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAACCTACCTGGCCTGGCGCAAGGA‑GCTGCAGGACTg > 2:282994/1‑150 (MQ=255) cTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAACCTACCTGGCCTGGCGCAAGGA‑GCTGCAGGACTgg < 2:43404/150‑1 (MQ=255) tGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAACCTACCTGGCCTGGCGCAAGGA‑GCTGCAGGACTggg < 2:668263/150‑1 (MQ=255) ggAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAACCTACCTGGCCTGGCGCAAGGA‑GCTGCAGGACTGGGt < 1:1236761/150‑1 (MQ=255) ggCTGAAGGACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGGCCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAACCTACCTGGCCTGGCGCAAGGA‑GCTGCAGGACTGGGTGa < 1:2223793/149‑1 (MQ=255) ggCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAACCTACCTGGCCTGGCGCAAGGA‑GCTGCAGGACTGGGTGa < 2:1115371/149‑1 (MQ=255) aagaaCGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAACCTACCTGGCCTGGCGCAAGGA‑GCTGCAGGACTGGGTGagcagc > 2:1909220/1‑150 (MQ=255) agaaCGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAACCTACCTGGCCTGGCGCAAGGA‑GCTGCAGGACTGGGt < 2:2419587/142‑1 (MQ=255) agaaCGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAACCTACCTGGCCTGGCGCAAGGA‑GCTGCAGGACTGGGt > 1:2419587/1‑142 (MQ=255) agaaCGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAACCTACCTGGCCTGGCGCAAGGA‑GCTGCAGGACTGGGTGagcagca < 1:2022266/150‑1 (MQ=255) tGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAACCTACCTGGCCTGGCGCAAGGA‑GCTGCAGGACTGGGTGAGCAGCAGCGACCTGt < 1:2041951/150‑1 (MQ=255) cTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAACCTACCTGGCCTGGCGCAAGGA‑GCTGCAGGACTGGGTGAGCAGCAGCGACCTGTcc < 1:1098843/150‑1 (MQ=255) tGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAACCTAcctggc > 1:1907702/1‑103 (MQ=255) tGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAACCTAcctggc < 2:1907702/103‑1 (MQ=255) tGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAACCTACCTGGCCTGGCGCAAGGA‑GCTGCAGGACTGGGTGAGCAGCAGCGACCTGt < 1:1111195/147‑1 (MQ=255) tGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAACCTACCTGGCCTGGCGCAAGGA‑GCTGCAGGACTGGGTGAGCAGCAGCGACCTGt > 2:1111195/1‑147 (MQ=255) tGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAACCTACCTGGCCTGGCGCAAGGA‑GCTGCAGGACTGGGTGAGCAGCAGCGACCTGTccc > 2:1778286/1‑150 (MQ=255) acttaaaTCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAACCTACCTGGCCTCGCGCCAAGA‑GATGCGGGGCTGCGGGAGAAGCAGCGACCTGGcccc > 1:1902115/5‑150 (MQ=255) gCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAACCTACCTGGCCTGGCGCAAGGA‑GCTGCAGGACTgg < 1:1474337/125‑1 (MQ=255) gCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAACCTACCTGGCCTGGCGCAAGGA‑GCTGCAGGACTgg > 2:1474337/1‑125 (MQ=255) gCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAACCTACCTGGCCTGGCGCAAGGA‑GCTGCAGGACTGGGTGAGCAGCAGCGACCTGTcccccc > 2:2098546/1‑150 (MQ=255) aaaTCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAACCTACCTGGCCTGGCGCAAGGA‑GCTGCAGGACTGGGTGAGCAGCAGCGACCTGTCCCCCCAg < 2:653846/150‑1 (MQ=255) ctCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAACCTACCTGGCCTGGCGCAAGGA‑GCTGCAGGACTGGGTGAGCAGCAGCGACCTGTCCCCCCAGGa < 1:285559/149‑1 (MQ=255) ccAACCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGGAACAACCCGCTGTACCGCCGCTACCTGCAAACCTACCTGGCCTGGCGCAAGGA‑GCTGCAGGACTGGGTGTGCAGCAGCGACCTGTCCCCCCAGGACa > 2:1270172/1‑150 (MQ=255) aGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAACCTACCTGGCCTGGCGCAAGGA‑GCTGCAGGACTGGGTGAGCAGCAGCGACCTGTCCCCCCAGGANATc < 2:1506741/150‑1 (MQ=255) aGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAACCTACCTGGCCTGGCGCAAGGA‑GCTGCAGGACTGGGTGAGCAGCAGCGACCTGTCCCCCCAGGACATc > 2:1758811/1‑150 (MQ=255) gCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAACCTACCTGGCCTGGCGCAAGGA‑GCTGCAGGACTGGGTGAGCAGCAGCGACCTGTCCCCCCAGGACATCa > 1:376627/1‑150 (MQ=255) tGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAACCTACCTGGCCTGGCGCAAGGA‑GCTGCAGGACTGGGTGAGCAGCAGCGACCTGTCCCCCCAGGACATCAGcc > 2:1339779/1‑150 (MQ=255) tGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACACGCTGTAGCGCCGCTACCTGCAAACCTACCTGGCCTGGCGCAAGGA‑GCTGCAGGACTGGGTGAGCAGCAGCGACCTGTCCCCCCAGGACATCAGcc > 1:656728/1‑150 (MQ=255) cccGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAACCTACCTGGCCTGGCGCAAGGA‑GCTGCAGGACTGGGTGAGCAGCAGCGACCTGTCCCCCCAGGACATCAGCCGCgg > 1:1273622/1‑150 (MQ=255) cccGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAACCTACCTGGCCTGGCGCAAGGA‑GCTGCAGGACTGGGTGAGCAGCAGCGACCTGTCCCCCCAGGACATCAGCCGCgg > 1:1336984/1‑150 (MQ=255) cccGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAACCTACCTGGCCTGGCGCAAGGA‑GCTGCAGGACTGGGTGAGCAGCAGCGACCTGTCCCCCCAGGACATCAGCCGCgg > 2:161415/1‑150 (MQ=255) ccGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAACCTACCTGGCCTGGCGCAAGGA‑GCTGCAGGACTGGGTGa < 2:78756/112‑1 (MQ=255) ccGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAACCTACCTGGCCTGGCGCAAGGA‑GCTGCAGGACTGGGTGa > 1:78756/1‑112 (MQ=255) attgaaGCG‑ACGGTCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAACCTACCTGGCCTGGCGCAAGGA‑GCTGCAGGACTGGGTGAGCAGCAGCGACCTGTTCCCCCAGGACACCAGCCGCTGcc > 2:1098197/6‑150 (MQ=255) aCAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAACCTACCTGGCCTGGCGCAAGGA‑GCTGCAGGACTGGGTGAGCAGCAGCGACCTGTCCCCCCAGGACATCAGCCGCGGCCAGt < 1:366657/150‑1 (MQ=255) cg‑acgaCCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAACCTACCTGGCCTGGCGCAAGGA‑GCTGCAGGACTGGGTGAGCAGCAGTGACCTGTCCCCCCAGGACATCAGCCGCGGCCAGTTCGt > 2:2238484/1‑150 (MQ=255) g‑acgacCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAACCTACCTGGCCTGGCGCAAGGA‑GCTGCAGGACTGGGTGAGCAGCAGCGACCTGTCCCCCCAGGACATCAGCCGCGGCCAGTTCGtc > 2:2405820/1‑150 (MQ=255) g‑acgacCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAACCTACCTGGCCTGGCGCAAGGA‑GCTGCAGGACTGGGTGAGCAGCAGCGACCTGTCCCCCCAGGACATCAGCCGCGGCCAGTTCGtc > 1:1856287/1‑150 (MQ=255) gacCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAACCTACCTGGCCTGGCGCAAGGA‑GCTGCAGGACTGGGTGAGCAGCAGCGACCTGTCCCCCCAGGACATCAGCCGCGGCCAGTTCGtcatc > 1:1034927/1‑150 (MQ=255) acCGTCGCTTCAATGACCCGGCCTGGAGACACAAAACGATGTACCTCCGCTACCTGCAAACATACCTGGCCTGGCGGCAGGATGCAGGCGG‑CATGGTGAGCAGCAGCGACCTGTCCCCCCAGGACATCAGCCGCGGCCAGTTCGtcatca > 1:2387956/1‑150 (MQ=255) ccGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAACCTACCTGGCCTGGCGCAAGGA‑GCTGCAGGACTGGGTGAGCAGCAGCGACCTGTCCCCCCAGGACATCAGCCGCGGCCAGTTCGTCATCaa > 1:437632/1‑150 (MQ=255) ccGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAACCTACCTGGCCTGGCGCAAGGA‑GCTGCAGGACTGGGTGAGCAGCAGCGACCTGTCCCCCCAGGACATCAGCCGCGGCCAGTTCGTCATCaa > 2:1581992/1‑150 (MQ=255) | CGCAAGGACCTGTTGAGCTCGGCACGCACCGTGCTGCGCCAGGCCGTGCGCCAACCGCTGCACAGCGCCAAGCATGTGGCTCACTTTGGCCTGGAGCTGAAGAACGTGTTGCTGGGCAAATCCAGCCTGGCCCCGGACAGCG‑ACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAACCTACCTGGCCTGGCGCAAGGA‑GCTGCAGGACTGGGTGAGCAGCAGCGACCTGTCCCCCCAGGACATCAGCCGCGGCCAGTTCGTCATCAA > NC_002947/5699660‑5699955 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |