| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,746,544 | G→C | 9.6% | intergenic (+35/+64) | PP_5042 → / ← PP_5043 | hypothetical protein/PhoPQ‑activated pathogenicity‑like protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,746,544 | 0 | G | C | 9.6% | 217.8 / 13.9 | 73 | intergenic (+35/+64) | PP_5042/PP_5043 | hypothetical protein/PhoPQ‑activated pathogenicity‑like protein |
| Reads supporting (aligned to +/- strand): ref base G (32/34); new base C (5/2); total (37/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.30e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.58e-01 | |||||||||||
TAAAAGCCGGCTGTGCACCATTTATGACAAGCGCCCGGAT‑ACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCG‑GGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCAGGATAAGTCTGCGGCAAAACGCTGACCGGG > NC_002947/5746395‑5746692 | tAAAAGCCGGCTGTGCACCATTTATGACAAGCGCCCGGAT‑ACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCG‑GGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCgcgg > 1:151872/1‑150 (MQ=255) aaGCCGGCTGTGCACCATTTATGACAAGCGCCCGGAT‑ACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCG‑GGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCgcgggcg > 1:1195066/1‑150 (MQ=255) aaGCCGGCTGTGCACCATTTATGACAAGCGCCCGGAT‑ACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCG‑GGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCgcgggcg > 2:1863264/1‑150 (MQ=255) aaGCCGGCTGTGCACCATTTATGACAAGCGCCCGGAT‑ACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCG‑GGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCccgcgcg < 2:35283/150‑1 (MQ=255) aGCCGGCTGTGCACCATTTATGACAAGCGCCCGGAT‑ACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCG‑GGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCgcgggcgg > 1:1651225/1‑150 (MQ=255) gCCGGCTGTGCACCATTTATGACAAGCGCCCGGAT‑ACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCG‑GGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGggcggc < 1:538659/150‑1 (MQ=255) gCCGGCTGTGCACCATTTATGACAAGCGACCGGATCACCTGCACCTA‑GTTCCCAAGGTCGGGCCACGGCCGCGGGTGTT‑CGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGggcggc < 1:534167/150‑1 (MQ=255) ggCTGTGCACCATTTATGACAAGCGCCCGGAT‑ACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCG‑GGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCt > 2:2293168/1‑150 (MQ=255) gCTGTGCACCATTTATGACAAGCGCCCGGAT‑ACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCG‑GGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTc > 1:657122/1‑150 (MQ=255) cACCATTTATGACAAGCGCCCGGAT‑ACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCG‑GGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCgcgggc < 1:133824/137‑1 (MQ=255) cACCATTTATGACAAGCGCCCGGAT‑ACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCG‑GGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCgcgggc > 2:133824/1‑137 (MQ=255) ccATTTATGACAAGCGCCCGGAT‑ACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCG‑GGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCtgt < 2:657122/150‑1 (MQ=255) cATTTATGACAAGCGCCCGGAT‑ACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCG‑GGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCtgtg < 1:2196739/150‑1 (MQ=255) cATTTATGACAAGCGCCCGGAT‑ACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCG‑GGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCtgtg > 2:139797/1‑150 (MQ=255) aTTTATGACAAGCGCCCGGAT‑ACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCG‑GGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTNTgg < 2:1505771/150‑1 (MQ=255) aTTTATGACAAGCGCCCGGAT‑ACCTGCCGCAACCACACCAAGGTCGGGCCACGGCCG‑GGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTgg < 1:726233/150‑1 (MQ=255) aCAAGCGCCCGGAT‑ACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCG‑GGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGcc < 1:1590893/150‑1 (MQ=255) cgcgcCAGGAT‑ACATGCCGCAACCACCCCAAGGTCGGGCCACGGCCG‑GGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGNATAANTCGAGCGCCGCGCGNGCGGCGCTCGATTCTGTGGCGATGCCGAg < 1:15962/149‑1 (MQ=255) cgcCCGGAT‑ACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCG‑GGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCt < 2:1606551/150‑1 (MQ=255) cgcCCGGAT‑ACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCG‑GGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCt < 2:2075783/150‑1 (MQ=255) gcCCGGAT‑ACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCG‑GGGTATTGCGCCTACAAGCCCAAGGTGATTTGTCGTTGAGTCTTGCGCCGGGGTATGAATCTATCGCCGCTTGGGCGGCGCTCGATTCTGTGGCGATGCCGCGCTg > 1:535060/1‑150 (MQ=255) cccGGAT‑ACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCG‑GGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTgg < 1:2293168/150‑1 (MQ=255) ccGGAT‑ACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCG‑GGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTggg > 1:965719/1‑150 (MQ=255) t‑ACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCG‑GGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGa < 1:840945/150‑1 (MQ=255) cTGCCGCAACCACCCCAAGGTCGGGCCACGGCCG‑GGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGc > 2:2183062/1‑150 (MQ=255) cTGCCGCAACCACCCCAAGGTCGGGCCACGGCCG‑GGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGc > 2:1128393/1‑150 (MQ=255) cTGCCGCAACCACCCCAAGGTCGGGCCACGGCCG‑GGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCCCGCGCGGCGCTCGAt < 2:1556054/120‑1 (MQ=255) cTGCCGCAACCACCCCAAGGTCGGGCCACGGCCG‑GGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCCCGCGCGGCGCTCGAt > 1:1556054/1‑120 (MQ=255) ccGCAACCACCCCAAGGTCGGGCCACGGCCG‑GGGTATTGCGCATACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGTGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACt < 2:476851/150‑1 (MQ=255) ccaccCCAAGGTCGGGCCACGGCCG‑GGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAAccc > 2:1872575/1‑150 (MQ=255) caccCCAAGGTCGGGGCACGGCCG‑GGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTGGCGCGGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCGCGATTCTGCGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCa < 2:1340199/150‑1 (MQ=255) accCCAAGGTCGGGCCACGGCCG‑GGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCAc < 1:483780/150‑1 (MQ=255) cccAAGGTCGGGCCACGGCCG‑GGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCt > 2:840499/1‑126 (MQ=255) cccAAGGTCGGGCCACGGCCG‑GGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCt < 1:840499/126‑1 (MQ=255) ggTCGGGCCACGGCCG‑GGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTccc > 1:2453423/1‑150 (MQ=255) gggCCACGGCCG‑GGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCAttt > 2:1459454/1‑150 (MQ=255) gggCCACGGCCG‑GGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCAttt > 2:1846759/1‑150 (MQ=255) cGGCCG‑GGGGATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTcagcca < 2:1079559/150‑1 (MQ=255) ccG‑GGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGCGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCg > 2:926159/1‑150 (MQ=255) gggTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTca < 1:389754/140‑1 (MQ=255) gggTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTca > 2:389754/1‑140 (MQ=255) gcgcCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTcc < 1:139797/150‑1 (MQ=255) cgcCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCCCTGAACCCACCGCTCCCATTTCCGCCAGCGGGGAAGCTCCg > 2:129716/1‑150 (MQ=255) tACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGACCCCCCCGCTCCAATTTCAGCCAGCGGGGAAGCTCCGGCaa < 1:1872575/150‑1 (MQ=255) tACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCaa < 2:47321/150‑1 (MQ=255) tACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCaa < 2:1651225/150‑1 (MQ=255) aCAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAg < 1:908768/150‑1 (MQ=255) cAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACt < 2:295878/105‑1 (MQ=255) cAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACt > 1:295878/1‑105 (MQ=255) aaGNCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCa > 2:1502679/1‑150 (MQ=255) cccAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCt > 1:382574/1‑64 (MQ=255) cccAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCt < 2:382574/64‑1 (MQ=255) cccAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCAccc > 1:1771236/1‑150 (MQ=255) cAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCg < 1:1227281/138‑1 (MQ=255) cAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCg > 2:1227281/1‑138 (MQ=255) gtggtTGGGCGTGGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGa < 2:535060/150‑1 (MQ=255) tGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGTGGGGAAGCGCCGGCAAGCACCCCCCTGATCCGc < 2:1078078/150‑1 (MQ=255) gggCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGCAGCTCCGGCAAGCACCCCCCTGATCCGCt < 2:2235171/150‑1 (MQ=255) cGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCtggt > 1:714039/1‑150 (MQ=255) gTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGTGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCtggtg < 1:12294/150‑1 (MQ=255) gTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCtggtg > 1:2084346/1‑150 (MQ=255) gTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCtggtg > 2:1475219/1‑150 (MQ=255) gTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCACGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCt < 2:1399409/146‑1 (MQ=255) gTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCACGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCt > 1:1399409/1‑146 (MQ=255) ttttcggcGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGGGGCGATGCCGAGCTGGGCATGAAGCACTGAATCCACCGCGCCCATTTCAGNCAGCNGGGAAGCTCCGGCANGCACCCCCCTGATCCGCTGGTGGATGCTc < 1:129716/143‑1 (MQ=255) ttGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCCCCCCCCTGATCCGCTGGTGGATGCTCa > 1:612022/1‑150 (MQ=255) ccGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCa < 1:1926051/145‑1 (MQ=255) ccGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCa > 2:1926051/1‑145 (MQ=255) cATAAATCGAGCGCCGCGCGGGCGGCGCTCGAGTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGGGGATGCTCAGGCTACGTCTg > 2:886701/1‑150 (MQ=255) aTAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCtggtg < 1:1043976/130‑1 (MQ=255) aTAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCtggtg > 2:1043976/1‑130 (MQ=255) aaTCGAGCGCCGCGCGGGCGGCGCTCTATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCAGGATAAGTCTGCGGc > 2:227871/1‑150 (MQ=255) tCGAGCGCCGCCCGCGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTcagccagc < 2:2030884/87‑1 (MQ=255) tCGAGCGCCGCCCGCGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTcagccagc > 1:2030884/1‑87 (MQ=255) tCGAGCGCCGCCCGCGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCAGGATAAGTCTGCGGCaa > 2:1418547/1‑150 (MQ=255) gAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGc < 2:1624503/128‑1 (MQ=255) gAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGc > 1:1624503/1‑128 (MQ=255) gAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCAGGATAAGTCTGCGGCaaaa < 1:172069/150‑1 (MQ=255) gAGCGCCGCCCGCGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCAGGATAAGTCTGCGGCaaaa > 1:265715/1‑150 (MQ=255) aGCGCCGCCCGCGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCAGGATAAGTCTGCGGCAAAAc > 2:1898535/1‑150 (MQ=255) cgcgcgGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCAGGATAAGTCTGCGGCAAAACGCTGa > 1:946330/1‑150 (MQ=255) gcgcgGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCAttt < 1:214730/70‑1 (MQ=255) gcgcgGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCAttt > 2:214730/1‑70 (MQ=255) gggcggCGCTCGATTCTGTGGCTATACCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCAGGATAATTCTGCGGCAAAACGCTGACCggg < 2:1195066/150‑1 (MQ=255) | TAAAAGCCGGCTGTGCACCATTTATGACAAGCGCCCGGAT‑ACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCG‑GGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCAGGATAAGTCTGCGGCAAAACGCTGACCGGG > NC_002947/5746395‑5746692 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |