Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 5,854,146 T→A 5.3% L37Q (CTG→CAG)  tcyP → sodium/cystine symporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,854,1460TA 5.3% 350.6 / 6.8 112L37Q (CTG→CAG) tcyPsodium/cystine symporter
Reads supporting (aligned to +/- strand):  ref base T (55/51);  new base A (2/4);  total (57/55)
Fisher's exact test for biased strand distribution p-value = 4.34e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.64e-01

Only 100 of 112 total aligned reads displayed.

AGGCGATGCCACTTCTGCTTTTTTCTGCTGGAGCTTCAATGAACCTGCCGCTGTCACTCAACCTGCTGGCGTTCCTGGCCCTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCACCCCGTGCTCAAGGCAACCATCGCCTGGCTCGATCTGGTCGGCAACGGCTATGTCGGCCTGTTACAAATGATCGTCATGCCGCTGATCTTCGCC  >  NC_002947/5853999‑5854294
                                                                                                                                                    |                                                                                                                                                    
agGCGATGCCACTTCTGCTTTTTTCTGCTGGAGCTTCAATGAACCTGCCGCTGTCACTCAACCTGCTGGCGTTCCTGGCCCTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTgg                                                                                                                                                    >  2:796399‑M2/1‑148 (MQ=255)
agGCGATGCCACTTCTGCTTTTTTCTGCTGGAGCTTCAATGAACCTGCCGCTGTCACTCAACCTGCTGGCGTTCCTGGCCCTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTg                                                                                                                                                     <  2:485980‑M2/149‑2 (MQ=255)
agGCGATGCCACTTCTGCTTTTTTCTGCTGGAGCTTCAATGAACCTGCCGCTGTCACTCAACCTGCTGGCGTTCCTGGCCCTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTg                                                                                                                                                     >  1:485980‑M2/1‑148 (MQ=255)
  gCGATGCCACTTCTGCTTTTTTCTGCTGGAGCTTCAATGAACCTGCCGCTGTCACTCAACCTGCTGGCGTTCCTGGCCCTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTg                                                                                                                                                  >  1:2310503/1‑150 (MQ=255)
        ccACTTCTGCTTTTTTCTGCTGGAGCTTCAATGAACCTGCCGCTGTCACTCAACCTGCTGGCGTTCCTGGCCCTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGc                                                                                                                                            >  2:1055389/1‑150 (MQ=255)
         cACTTCTGCTTTTTTCTGCTGGAGCTTCAATGAACCTGCCGCTGTCACTCAACCTGCTGGCGTTCCTGGCCCTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTgg                                                                                                                                              >  1:2323619/1‑147 (MQ=255)
         cACTTCTGCTTTTTTCTGCTGGAGCTTCAATGAACCTGCCGCTGTCACTCAACCTGCTGGCGTTCCTGGCCCTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTgg                                                                                                                                              <  2:2323619/147‑1 (MQ=255)
          aCTTCTGCTTTTTTCTGCTGGAGCTTCAATGAACCTGCCGCTGTCACTCAACCTGCTGGCGTTCCTGGCCCTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGt                                                                                                                                          >  1:1769480/1‑150 (MQ=255)
                                gCTTCAATGAACCTGCCGCTGTCACTCAACCTGCTGGCGTTCCTGGCCCTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCg                                                                                                                                  >  1:461032/1‑136 (MQ=255)
                                gCTTCAATGAACCTGCCGCTGTCACTCAACCTGCTGGCGTTCCTGGCCCTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCg                                                                                                                                  <  2:461032/136‑1 (MQ=255)
                                 cTTCAATGAACCTGCCGCTGTCACTCAACCTGCTGGCGTTCCTGGCCCTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTg                                                                                                                                         <  2:816605/128‑1 (MQ=255)
                                 cTTCAATGAACCTGCCGCTGTCACTCAACCTGCTGGCGTTCCTGGCCCTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTg                                                                                                                                         >  1:816605/1‑128 (MQ=255)
                                  ttCAATGAACCTGCCGCTGTCACTCAACCTGCTGGCGTTCCTGGCCCTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATAc                                                                                                                  >  1:736877/1‑150 (MQ=255)
                                     aaTGAACCTGCCGCTGTCACTCAACCTGCTGGCGTTCCTGGCCCTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGAt                                                                                                               >  1:1413828/1‑150 (MQ=255)
                                     aaTGAACCTGCCGCTGTCACTCAACCTGCTGGCGTTCCTGGCCCTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCAGGCCAAGCAGTACCTTCTTGGCCAggctccagtcgg                                                                                                                                          >  2:1689519‑M2/1‑111 (MQ=255)
                                     aaTGAACCTGCCGCTGTCACTCAACCTGCTGGCGTTCCTGGCCCTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCAGGCCAAGCAGTACCTTCTTGGCCAggctccagtcgg                                                                                                                                          <  1:1689519‑M2/123‑13 (MQ=255)
                                     aaTGAACCTGCCGCTGTCACGCAACCTGCTGGCGTTCCTGGCCCTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGAt                                                                                                               >  2:1167552/1‑150 (MQ=255)
                                         aaCCTGCCGCTGTCACTCAACCTGCTGGCGTTCCTGGCCCTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTAt                                                                                                           <  2:238644/150‑1 (MQ=255)
                                         aaCCTGCCGCTGTCACTCAACCTGCTGGCGTTCCTGGCCCTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCAGGCCAAGCAGTACCTTCTTGGCCAggctccag                                                                                                                                              <  1:1262205‑M2/115‑9 (MQ=255)
                                          cccTGCCGCTGTCACTCAACCTGCTGGCGTTCCTGGCCCTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTCGTCTTCGGCCTTGTGCTGCATACGATCTATg                                                                                                          <  2:602640/149‑1 (MQ=255)
                                          aCCTGCCGCTGTCACTCAACCTGCTGGCGTTCCTGGCCCTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATg                                                                                                          <  1:1813432/150‑1 (MQ=255)
                                            cTGCCGCTGTCACTCAACCTGCTGGCGTTCCTGGCCCTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGgc                                                                                                        >  2:1698325/1‑150 (MQ=255)
                                              gCCGCTGTCACTCAACCTGCTGGCGTTCCTGGCCCTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTg                                                                                                                                                     <  1:491628‑M2/103‑2 (MQ=255)
                                              gCCGCTGTCACTCAACCTGCTGGCGTTCCTGGCCCTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTg                                                                                                                                                     >  2:491628‑M2/1‑102 (MQ=255)
                                               ccGCTGTCACTCAACCTGCTGGCGTTCCTGGCCCTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCa                                                                                                     <  2:1413828/150‑1 (MQ=255)
                                                cGCTGTCACTCAACCTGCTGGCGTTCCTGGCCCTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAg                                                                                                    <  2:2311116/150‑1 (MQ=255)
                                                 gCTGTCACTCAACCTGCTGGCGTTCCTGGCCCTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAgg                                                                                                   <  2:3856/150‑1 (MQ=255)
                                                   tGTCACTCAACCTGCTGGCGTTCCTGGCCCTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGcc                                                                                                 >  2:1371225/1‑150 (MQ=255)
                                                    gTCACTCAACCTGCTGGCGTTCCTGGCCCTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGCACCCGTGGGAGGGGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCa                                                                                                >  2:2300567/1‑150 (MQ=255)
                                                       aCTCAACCTGCTGGCGTTCCTGGCCCTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCAccc                                                                                             >  1:1246677/1‑150 (MQ=255)
                                                        cTCAACCTGCTGGCGTTCCTGGCCCTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCTAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTgg                                                                                                                                        >  1:1417765/1‑106 (MQ=255)
                                                        cTCAACCTGCTGGCGTTCCTGGCCCTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCTAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTgg                                                                                                                                        <  2:1417765/106‑1 (MQ=255)
                                                          cAACCTGCTGGCGTTCCTGGCCCTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCACCCCGt                                                                                          <  2:1067692/150‑1 (MQ=255)
                                                           aaCCTGCTGGCGTTCCTGGCCCTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCACCCCGTg                                                                                         >  1:2213551/1‑150 (MQ=255)
                                                           aaCCTGCTGGCGTTCCTGGCCCTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCACCCCGTg                                                                                         <  1:1371225/150‑1 (MQ=255)
                                                             ccTGCTGGCGTTCCTGGCCCTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTGCGGCCTTGTGCTGCATa                                                                                                                   >  2:800758/1‑122 (MQ=255)
                                                              ctgctgGCGTTCCTGGCCCTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCACCCCGTGCTc                                                                                      <  1:1055389/150‑1 (MQ=255)
                                                               tgctgGCGTTCCTGGCCCTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTggg                                                                                                                                             <  2:1446194/94‑1 (MQ=255)
                                                                  tgGCGTTCCTGGCCCTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTtg                                                                                                                            <  2:909652/108‑1 (MQ=255)
                                                                  tgGCGTTCCTGGCCCTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTtg                                                                                                                            >  1:909652/1‑108 (MQ=255)
                                                                   ggCGTTCCGGGCCCTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCACCCCGTGCTCAAGGc                                                                                 <  2:1073260/150‑1 (MQ=255)
                                                                    gCGTTCCTGGCCCTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCACGCCACCCCGTGCACTAGGcc                                                                                >  1:928318/1‑149 (MQ=255)
                                                                      gTTCCTGGCCCTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCACCCCGTGCTCAAGGCAAc                                                                              >  1:2010284/1‑150 (MQ=255)
                                                                       ttCCTGGCCCTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCACCCCGTGCTCAAGGCAAcc                                                                             <  2:1769480/150‑1 (MQ=255)
                                                                          cTGGCCCTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCACCCCGTGCTCAAGGCAACCATc                                                                          >  1:335154/1‑150 (MQ=255)
                                                                             gCCCTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATa                                                                                                                   <  2:2314580/106‑1 (MQ=255)
                                                                               ccTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCACCCCGTGCTCAAGGCAACCATCGCCTg                                                                     >  1:694219/1‑150 (MQ=255)
                                                                               ccTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCACCCCGTGCTCAAGGCAACCATCGCCTg                                                                     <  2:862149/150‑1 (MQ=255)
                                                                                cTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCACCCCGTGCTCAAGGCAACCATCGCCTgg                                                                    >  1:489068/1‑150 (MQ=255)
                                                                                 tGTTGCGGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCACCCCGTGCTCAAGGCAACCATCGCCTGGc                                                                   >  2:1974335/1‑150 (MQ=255)
                                                                                  gTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCAc                                                                                               <  2:915790/121‑1 (MQ=255)
                                                                                  gTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCAc                                                                                               >  1:915790/1‑121 (MQ=255)
                                                                                       tGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTTCTTGGCCTGGTGATGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCACCCCGTGTTCACGGCAACCCTCCCATGGCTCGATc                                                             >  1:362938/1‑150 (MQ=255)
                                                                                       ggggTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCACCCCGTGCTCAAGGCAACCATCGCCTGGCTCGATc                                                             <  2:1623090/149‑1 (MQ=255)
                                                                                         ggTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCACCCCGTGCTCAAGGCAACCATCGCCTGGCTCGATCTg                                                           <  1:1368765/150‑1 (MQ=255)
                                                                                         ggTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCACCCCGTGCTCAAGGCAACCATCGCCTGGCTCGATCTg                                                           <  1:1698325/150‑1 (MQ=255)
                                                                                           tCTGGCACAAACCCGCCGCACCGACTGGAGCTTGTCCAAGAAGGAGATGGCGAACCTTGCGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATGCGATCTATGGCGCAGGCCACCCCGTGCTCAAGGCAACCATCGCCTGGCTCGATCTGGt                                                         <  2:1242552/150‑1 (MQ=255)
                                                                                                cacaAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCACCCCGTGCTCAAGGCAACCATCGCCTGGCTCGATCTGGTCGGCa                                                    >  1:1578339/1‑150 (MQ=255)
                                                                                                 acaAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCACCCCGTGCTCAAGGCAACCATCGcc                                                                       <  1:1763476/130‑1 (MQ=255)
                                                                                                 acaAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCACCCCGTGCTCAAGGCAACCATCGcc                                                                       >  2:1763476/1‑130 (MQ=255)
                                                                                                 acaAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCACCCCGTGCTCAAGGCAACCATCGCCTGGCTCGATCTGGTCGGCaa                                                   >  1:2133568/1‑150 (MQ=255)
                                                                                                 acaAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCACCCCGCGCTCAAGGCAACCCTCGCCTCGCTCGATCTGGTCGGCaa                                                   >  1:254381/1‑150 (MQ=255)
                                                                                                 acaAACCCGCCGCACCAACTGGAGCCTGGCCAAGAAGGTACTGCTTGTCCTGGTGCTGGGCATGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCTCAGGCCACCCCGTGCTCAAGGCAACCATCGCCTTGCTCGATCTGGTCGGCaa                                                   >  2:570206/1‑150 (MQ=255)
                                                                                                    aaCCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCACCCCGTGCTCAAGGCAACCATCGCCTg                                                                     >  1:2390242/1‑129 (MQ=255)
                                                                                                    aaCCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCACCCCGTGCTCAAGGCAACCATCGCCTg                                                                     <  2:2390242/129‑1 (MQ=255)
                                                                                                     aCCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCACCCCGTGCTCAAGGCAACCATCGCCTGGCTCGATCTGGTCGGCAACGGc                                               <  2:335154/150‑1 (MQ=255)
                                                                                                       ccgccgCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTTTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCACCCCGTGCTCAAGGCAACCATCGCCTgg                                                                    <  2:2440550/127‑1 (MQ=255)
                                                                                                       ccgccgCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTTTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCACCCCGTGCTCAAGGCAACCATCGCCTgg                                                                    >  1:2440550/1‑127 (MQ=255)
                                                                                                       ccgccgCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCACCCCGTGCTCAAGGCAACCATCGCCTgg                                                                    <  2:2440368/127‑1 (MQ=255)
                                                                                                       ccgccgCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCACCCCGTGCTCAAGGCAACCATCGCCTgg                                                                    >  1:2440368/1‑127 (MQ=255)
                                                                                                        cgccgcACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCACCCCGTGCTCAAGGCAACCATCGCCTGGCTCGATCTGGTCGGCAACGGCTAt                                            <  1:1208401/150‑1 (MQ=255)
                                                                                                              aCCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCACCCCGTGCTCAAGGCAACCATCGCCTGGCTCGATCTGGTCGGCAACGGCTATGTCGGc                                      <  2:736877/150‑1 (MQ=255)
                                                                                                                cGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCACCCCGTGCTCAAGGCAACCATCGCCTGGCTCGATCTGGTCGGCAACGGCTATGTCGGCCt                                    >  2:607209/1‑150 (MQ=255)
                                                                                                                   cTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTggctccagtcggtgcggcgggttagtgccagacccagccacagggccaggaacgccagcaggttgaatgacagcggcaggtt                                                                    <  2:1262205‑M2/115‑83 (MQ=255)
                                                                                                                   cTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCACCCCGTGCTCAAGGCAACCATCGCCTGGCTCGATCTGGTCGGCAACGGCTATGTCGGCCTGtt                                 <  2:2010284/150‑1 (MQ=255)
                                                                                                                        gCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCGCCCCGTGCTCAAGGCAACCATCGCCTGCCTCGATCTGGTCGGCAACGGCTATGTCGGCCTGTTACaaa                            <  1:1348623/150‑1 (MQ=255)
                                                                                                                         ccTGGCCAAGAAGGTACTGCTTGGCCAggctccagtcggtgcggcgggtttgcgccagacccagcaacagggccaggaacgccagcaggttgagtgacagcggcaggttcattgaagctccagcagaaaaaagcagaagtggcatcgcct                           <  2:1448901‑M2/150‑124 (MQ=255)
                                                                                                                          cTGGCCAAGAAGGTACTGCTTGGCCAggctccagtcggtgcggcgggtttgtgccagacccagcaacagggccaggaacgccagcaggttgagtgacagcggcaggttcattgaagctccagcagaaaaaa                                             <  2:1986909‑M2/131‑106 (MQ=255)
                                                                                                                          cTGGCCAAGAAGGTACTGCTTGGCCAggctccagtcggtgcggcgggtttgtgccagacccagcaacagggccaggaacgccagcaggttgagtgacagcggcaggttcattgaagctccagcagaaaaaa                                             >  1:1986909‑M2/1‑26 (MQ=255)
                                                                                                                           tGGCCAAGAAGGTACTGCTTGGCCTggctccagtcggtgcggcgggtttgtgccagacccagcaacagggc                                                                                                        <  2:839758‑M2/71‑47 (MQ=255)
                                                                                                                           tGGCCAAGAAGGTACTGCTTGGCCTggctccagtcggtgcggcgggtttgtgccagacccagcaacagggc                                                                                                        >  1:839758‑M2/1‑25 (MQ=255)
                                                                                                                           tGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCACCCCGTGCTCAAGGCAACCATCGCCTGGCTCGATCTGGTCGGCAACGGCTATGTCGGCCTGTTACAAATGa                         >  2:1800892/1‑150 (MQ=255)
                                                                                                                           tGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCACCCCGTGCTCAAGGCAACCATCGCCTGGCTCGATCTGGTCGGCAACGGCTATGTCGGCCTGTTACAAATGa                         <  1:607209/150‑1 (MQ=255)
                                                                                                                             gCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCACCCCGTGCTCAAGGCAACGATCGCCTGGCTCGATCTGGTCGGCAACGGCTATGTCGGCCTGTTACAAATGATc                       <  1:294034/150‑1 (MQ=255)
                                                                                                                              ccAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCACCCCGTGCTCAAGGCAACCATCGCCTGGCTCGATCTGGTCGGCAACGGCTATGTCGGCCTGTTACAAATGATCg                      <  2:2213551/150‑1 (MQ=255)
                                                                                                                               cAAGAAGGTACTGCTTGGCCTGGTGCTGTGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCACCCCGTGCTCAAGGCAACCATCGCCTGGCTCGAt                                                              <  1:2244644/109‑1 (MQ=255)
                                                                                                                                aagaagGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCACCCCGTGCTCAAGGCAACCATCGCCTGGCTCGATCTGGTCGGCAACGGCTATGTCGGCCTGTTACAAATGATCGTc                    >  1:421305/1‑150 (MQ=255)
                                                                                                                                     ggTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCACCCCGTGCTCAAGGCAACCATCGCCTGGCTCGATCt                                                            >  2:1866327/1‑105 (MQ=255)
                                                                                                                                     ggTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCACCCCGTGCTCAAGGCAACCATCGCCTGGCTCGATCt                                                            <  1:1866327/105‑1 (MQ=255)
                                                                                                                                      gTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCACCCCGTGCTCAAGGCAACCATCGCCTGGCTCGATCTGGTCGGCAACGGCTATGTCGGCCTGTTACAAATGATCGTCCTGCCg              >  1:336634/1‑150 (MQ=255)
                                                                                                                                        aCTGCTTGGCCTGGTGCCGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCACCCCGTGCTCAAGGCAACCATCGCCTGGCTCGATCTGGTCGGCAACGGCTATGTCGGCCTGTTACAAATGATCGTCATGCCGCt            >  2:2423213/1‑150 (MQ=255)
                                                                                                                                         cTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCACCCCGTGCTCAAGGCAACCATCGCCTGGCTCGATCTGGTCGGCAACGGCTATGTCGGCCTGTTACAAATGATCGTCATGCCGCTg           >  2:2074626/1‑150 (MQ=255)
                                                                                                                                             cTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCACCCCGTGCTCAAGGCAACCATCGCCTGGCTCGATCTGGTCGGCAACGGCTATGTCg                                        >  1:1917699/1‑118 (MQ=255)
                                                                                                                                             cTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCACCCCGTGCTCAAGGCAACCATCGCCTGGCTCGATCTGGTCGGCAACGGCTATGTCg                                        <  2:1917699/118‑1 (MQ=255)
                                                                                                                                             cTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCACCCCGTGCTCAAGGCAACCATCGCCTGGCTCGATCTGGTCGGCAACGGCTATGTCGGCCTGTTACAAATGATCGTCATGCCGCTGATc        >  2:2011928/1‑150 (MQ=255)
                                                                                                                                             cTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCACCCCGTGCTCAAGGCAACCATCGCCTGGCTCGATCTGGTCGGCAACGGCTATGTCGGCCTGTTACAAATGATCGTCATGCCGCTGATc        >  2:2110906/1‑150 (MQ=255)
                                                                                                                                             cTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCACCCCGTGCTCAAGGCAACCATCGCCTGGCTCGATCTGGTCGGCAACGGCTATGTCGGCCTGTTACAAATGATCGTCATGCCGCTGATc        >  2:2109071/1‑150 (MQ=255)
                                                                                                                                             cTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCACCCCGTGCTCAAGGCAACCATCGCCTGGCTCGATCTGGTCGGCAACGGCTATGTCGGCCTGTTACAAATGATCGCCATGCCGCTGATc        >  1:1854911/1‑150 (MQ=255)
                                                                                                                                                  ccTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCACCCCGTGCTCAAGGCAACCATCGCCTGGCTCGATCTGGTCGGCAACGGCTATGTCGGCCTGTTACAAATGATCGTCATGCCGCTGATCTTCGc   <  1:2011928/150‑1 (MQ=255)
                                                                                                                                                   cTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCCGCATACGATCTATGGCGCAGGCCACCCCGTGCTCAAGGCAACCATCGCCTGGCTCGATCTGGTCGGCAACGGCTATGTCGGCCTGTTACCAATGATCGTCATGCCGCTGATCTTCGcc  <  2:1251475/150‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
AGGCGATGCCACTTCTGCTTTTTTCTGCTGGAGCTTCAATGAACCTGCCGCTGTCACTCAACCTGCTGGCGTTCCTGGCCCTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCCAAGAAGGTACTGCTTGGCCTGGTGCTGGGCGTGGTCTTCGGCCTTGTGCTGCATACGATCTATGGCGCAGGCCACCCCGTGCTCAAGGCAACCATCGCCTGGCTCGATCTGGTCGGCAACGGCTATGTCGGCCTGTTACAAATGATCGTCATGCCGCTGATCTTCGCC  >  NC_002947/5853999‑5854294

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: