| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,920,559 | C→T | 5.1% | V363V (GTC→GTT) | PP_5190 → | type II secretion system protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,920,559 | 0 | C | T | 5.1% | 288.5 / 4.1 | 98 | V363V (GTC→GTT) | PP_5190 | type II secretion system protein |
| Reads supporting (aligned to +/- strand): ref base C (43/49); new base T (3/2); total (47/51) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.66e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.81e-01 | |||||||||||
GACCGCCTTGGCCTGCACGGCCAGCAACTGGCCCAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTG‑GTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCTGGGGTTTGCCAACGCGGTCAGGGCCATGCTGCGCCAAGACCCCGACATCATCATGATCGGCGAAATCC > NC_002947/5920410‑5920707 | gACCGCCTTGGCCTGCACGGCCAGCAACTGGCCCAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTG‑GTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTc > 1:1710907/1‑150 (MQ=255)gACCGCCTTGGCCTGCACGGCCAGCAACTGGCCCAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTG‑GTCACCGGCCCCACAGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTc < 2:2298547/150‑1 (MQ=255) cGCCTTGGCCTGCACGGCCAGCAACTGGCCCAATGGCAGCGCCTGCTTCGTCATCGCCAAGGCATCACCCTG‑GTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAAc < 2:1302537/150‑1 (MQ=255) cGCCTTGGCCTGCACGGCCAGCAACTGGCCCAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTG‑GTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAAc < 1:2337492/150‑1 (MQ=255) tGGCCTGCACGGCCCGCCACTGGCCCAGTGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATAATAAGTTGGC‑GCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTTGACCtgtg < 1:414187/150‑1 (MQ=255) tGGCCTGCACGGCCAGGAACTGGCCCAATGGCAGCGCGTGATTCGTCAGCGCCAAGGCATCATCCTG‑GTCACCGGCCCCACCGGCTCCGGCCAGACCAGCACGCTGTACACCAGCCCCAAACTGCTGGCCACACCACAGGTCAACCtgtg < 2:145128/150‑1 (MQ=255) cTGCACGGCCAGCAACTGGCCCAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTG‑GTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCtgt > 1:371365/1‑145 (MQ=255) cTGCACGGCCAGCAACTGGCCCAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTG‑GTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCtgt < 2:371365/145‑1 (MQ=255) cACGACCAGCAACTGGCCCAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTG‑GTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATc < 1:618691/150‑1 (MQ=255) ggCCAGCAACTGGCCCAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTG‑GTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGa‑a < 2:1414080/150‑1 (MQ=255) aGCAACTGGCCCAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTG‑GTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCtgt > 1:1819666/1‑135 (MQ=255) aGCAACTGGCCCAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTG‑GTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCtgt < 2:1819666/135‑1 (MQ=255) aGCAACTGGCCCAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTG‑GTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGAcc > 2:1457579/1‑150 (MQ=255) gCAACTGGCCCAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTG‑GTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGAccc < 2:1038039/150‑1 (MQ=255) aCTGGCCCAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTG‑GTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGAt < 1:254024/150‑1 (MQ=255) cTGGCCCAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTG‑GTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATc < 1:1104172/150‑1 (MQ=255) cTGGCCCAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTG‑GTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATc < 2:17325/150‑1 (MQ=255) gCCCAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTG‑GTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAg > 1:1110263/1‑150 (MQ=255) gCCCAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTG‑GTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAg > 1:1687453/1‑150 (MQ=255) cccAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTG‑GTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAgc < 1:176747/150‑1 (MQ=255) ccAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTG‑GTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCa > 1:528746/1‑128 (MQ=255) ccAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTG‑GTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCa < 2:528746/128‑1 (MQ=255) ccAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTG‑GTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAgcg > 1:1834689/1‑150 (MQ=255) ccAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTG‑GTCACCGGCCCCACCCGCTCCGGCAAGACGAGCGCGCTGTACACCAGCCTCAACCTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAgcg > 1:886243/1‑150 (MQ=255) ccAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATAAACATG‑TGTATCGTCCCCACGGCCGCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAgcg > 2:82171/1‑150 (MQ=255) ccAATGGCAGCGCCTGCTTCGTCAGAGACAAGGCATCATCCTG‑GTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACGACAGGTCAACCTGTGCACCATCGA‑CGTCCCGCTCGAgct > 2:1098554/1‑149 (MQ=255) aaTGGCAGCGCTTGCTTCGTCAGCGCCAAGGCATCATCCTG‑GTCACCGGCCACACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGcc < 1:268960/150‑1 (MQ=255) aTGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTG‑GTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCt > 2:2310087/1‑150 (MQ=255) gCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTG‑GTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGa < 1:1323782/150‑1 (MQ=255) gcgcCTGCTTCGTCAGCGCCAAGGCATCATCCTG‑GTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGagcc > 2:1756756/1‑150 (MQ=255) gcgcCTGCTTCGTCAGCGCCAAGGCATCATCCTG‑GTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGagcc < 2:1710907/150‑1 (MQ=255) cgcCTGCTTCGTCAGCGCCAAGGCATCATCCTG‑GTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGAcc > 2:362882/1‑130 (MQ=255) cgcCTGCTTCGTCAGCGCCAAGGCATCATCCTG‑GTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGAcc < 1:362882/130‑1 (MQ=255) cTGCTTCGTCAGCGCCAAGGCATCATCCTG‑GTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGagccagcc > 2:1894117/1‑150 (MQ=255) cTGCTTCGTCAGCGCCAAGGCATCATCCTG‑GTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGagacagcc > 2:2089675/1‑150 (MQ=255) gCTTCGTCAGCGCCAAGGCATCATCCTG‑GTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCCAGCCtt > 1:878921/1‑150 (MQ=255) ttCGTCAGCGCCAAGGCATCATCCTG‑GTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGa > 1:159077/1‑139 (MQ=255) ttCGTCAGCGCCAAGGCATCATCCTG‑GTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGa < 2:159077/139‑1 (MQ=255) tCGTCAGCGCCAAGGCATCATCCTG‑GTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCCAGCCTTCaa < 2:878921/150‑1 (MQ=255) tCAGCGCCAAGGCATCATCCTG‑GTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCa < 1:2068608/150‑1 (MQ=255) tCAGCGCCAAGGCATCATCCTG‑GTCACCGGCCACACCAGATACGGCAAATCCATTACGCTGTACACCAGCCCCAACGTTGGGCTGGCTGTTCACGTGAACCGGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCCAACCTTCAACCa > 1:1750910/1‑150 (MQ=255) gcCAAGGCATCATCCTG‑GTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGc > 2:2165241/1‑150 (MQ=255) ccAAGGCATCATCCTG‑GTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTTGACCtgtggt > 2:1781105/1‑99 (MQ=255) ccAAGGCATCATCCTG‑GTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTTGACCtgtggt < 1:1781105/101‑3 (MQ=255) cAAGGCATCATCCTG‑GTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAg < 1:1439931/150‑1 (MQ=255) cAAGGCATCATCCTG‑GTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAg < 1:2310087/150‑1 (MQ=255) cAAGGCATCATCCTG‑GTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAg < 1:1756756/150‑1 (MQ=255) atcatcCTG‑GTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAg > 1:79890/1‑150 (MQ=255) atcatcCTG‑GTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGACCTCACCACCGGTCACTCCGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAg > 1:767709/1‑150 (MQ=255) atcCTG‑GTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAgc < 2:1811980/112‑1 (MQ=255) atcCTG‑GTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAgc > 1:1811980/1‑112 (MQ=255) tcCTG‑GTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCcg > 1:2198919/1‑150 (MQ=255) tG‑GTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCgcgc > 1:1403782/1‑150 (MQ=255) tCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTgg > 2:2006353/1‑150 (MQ=255) cGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCCGGAGCCAGCCTTCAACCAGTTGCAGGTCCAGCGCGGGCTGCACCt < 1:2443128/150‑1 (MQ=255) cccACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCTgggg < 1:73590/150‑1 (MQ=255) ccACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCTGGGGt > 2:1753629/1‑150 (MQ=255) aCCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGAcc > 2:1865573/1‑85 (MQ=255) aCCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGAcc < 1:1865573/85‑1 (MQ=255) aCCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCTGGGGttt < 1:1505910/150‑1 (MQ=255) ccGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCTGGGGTTTg < 2:79890/150‑1 (MQ=255) gCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCTgg > 2:2089468/1‑141 (MQ=255) gCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCTgg < 1:2089468/141‑1 (MQ=255) tCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCTGGGGTTTGCCAAc < 1:1457579/150‑1 (MQ=255) ggCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGcc < 2:1488666/122‑1 (MQ=255) ggCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGcc > 1:1488666/1‑122 (MQ=255) gCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGagcca > 2:2394495/1‑95 (MQ=255) gCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGagcca < 1:2394495/95‑1 (MQ=255) aCCAGCACGCTGTACACCAGCCTCAAACTGCTGCCTCCCTTGCAGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCTGGGGTTTGCCAACGCGGTCAgg < 1:1307514/150‑1 (MQ=255) aCGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCTGGGGTTTGCCAACGCGGTCAGGGCCAtg < 1:2006353/150‑1 (MQ=255) gCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCTGGGGTTTGCCAAcgcg < 2:2217416/136‑1 (MQ=255) gCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCTGGGGTTTGCCAAcgcg > 1:2217416/1‑136 (MQ=255) tGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCTGGGGTTTGCCAACGCGGTCAGGGCCAtgctgc > 2:949719/1‑150 (MQ=255) acCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCTGGGGTTTGCCAACGCGGTCAGGGCCATGCTGCGCCaa < 1:1894117/150‑1 (MQ=255) acCAGCCTCAAACTGCTGGCCACACCACAGGTCAAAATGTGCA‑CATCCAGATATCCGGTTGTTTGCCTGGAGCCTGGCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCTGGGGTTTGCCAACGCGGTCAGGGCCATGCTGCGCCaa < 1:2379343/150‑1 (MQ=255) tCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCTGGGGTTTGTCAACGCGGTCAGGGCCATGCTGCGCCAAGACCCCg > 1:66417/1‑150 (MQ=255) aaCTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGAcc > 1:1142245/1‑102 (MQ=255) aaCTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGAcc < 2:1142245/102‑1 (MQ=255) ctgGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGCCCTGGGGTTTGCCAACGCGGTCAGGGCCATGCTGCGCCAAGACCCCGAcatcatc < 2:886243/150‑1 (MQ=255) ctgGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCTGGGGTTTGCCAACGCGGTCAGGGCCATGCTGCGCCAAGACCCCGAcatcatc < 1:2089675/150‑1 (MQ=255) gCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCGAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCTGGGGTTTGCCAACGCGGTCAGGGCCATGCTGCGCCAAGACCCCGACATCATCATg > 2:1285847/1‑150 (MQ=255) cacaccacaGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCTGGGGTTTGCCAACGCGGTCAGGGCCATGCTGCGCCAAGACCCCGAcatcatcatttg < 1:82171/150‑4 (MQ=255) cacaccacaGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCTGGGGTTTGCCAACGCGGTCAGGGCCATGCTGCGCCAAGACCCCGACATCATCATGAt > 2:1573740/1‑150 (MQ=255) acaccacaGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCTGGGGTTTGCCAACGCGGTCAGGGCCATGCTGCGCCaa > 1:278374/1‑129 (MQ=255) acaccacaGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCTGGGGTTTGCCAACGCGGTCAGGGCCATGCTGCGCCaa < 2:278374/129‑1 (MQ=255) tgcacaGGTTGACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCTGGGGTTTGCCAACGCGGTCAGGGCCATGCTGCGCCAAGACCCCGACATCATCATGATCgg > 1:835014/3‑150 (MQ=255) tgcacaGGTTGACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCCAGCATTAAACCAGTTGCAGGTTAGACCCTCGCTCGACCTGGGGTTTGCCAACGCGGTCAGGGCCATGCTGCGCCAAGACCCCGACATCATCATGATCgg > 1:1485348/3‑150 (MQ=255) accacaGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCTGGGGTTTGCCAACGCGGTCAGGGCCATGCTGCGCCAAGACCCCGACATCATCATGATCgg > 2:1723875/1‑150 (MQ=255) ccacaGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCTGGGGTTTGCCAACGCGGTCAGGGCCATGCTGCGCCAAGACCCCGACATCATCATGATCGGc < 1:949719/150‑1 (MQ=255) cacaGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCTggg > 1:920523/1‑91 (MQ=255) cacaGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCTggg < 2:920523/91‑1 (MQ=255) cacaGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCTGGGGTTTGCCAACGCGGTCAg < 2:2296946/109‑1 (MQ=255) cacaGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCTGGGGTTTGCCAACGCGGTCAg > 1:2296946/1‑109 (MQ=255) caGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCTggg < 2:1568770/89‑1 (MQ=255) caGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCTggg < 2:1569686/89‑1 (MQ=255) caGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCTggg > 1:1569686/1‑89 (MQ=255) caGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCTggg > 1:1568770/1‑89 (MQ=255) ggTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCTGGGGTTTGCCAACGCGGTCAGGGCCATGCTGCGCCAAGACCCCGACATCATCATGATCGGCGAAAt > 2:961590/1‑150 (MQ=255) gTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCTGGGGTTTGACGGCGCGGTCAGGGCCATGCTGCGCCAAGACCCCGACATCATCATGATCGGCGAAATc > 1:626342/1‑150 (MQ=255) tCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCTGGGGTTTGCCAACGCGGTCAGGGCCATGCTGCGCCAAGACCCCGACATCATCATGATCGGCGAAATcc < 2:1834689/150‑1 (MQ=255) | GACCGCCTTGGCCTGCACGGCCAGCAACTGGCCCAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTG‑GTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGA‑AGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCTGGGGTTTGCCAACGCGGTCAGGGCCATGCTGCGCCAAGACCCCGACATCATCATGATCGGCGAAATCC > NC_002947/5920410‑5920707 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |